RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 JARID2Q92833 1246 aaPredicted RBP12.93□□□□□ -0.34
CLIP1-213ENST00000540338 BICC1Q9H694 974 aaKnown RBP12.93□□□□□ -0.34
CLIP1-213ENST00000540338 GRPEL1Q9HAV7 217 aa12.93□□□□□ -0.34
CLIP1-213ENST00000540338 VPS37CA5D8V6 355 aaPredicted RBP12.93□□□□□ -0.34
CLIP1-213ENST00000540338 PLCB2Q00722 1185 aa12.93□□□□□ -0.34
CLIP1-213ENST00000540338 ZSCAN31Q96LW9 406 aaPredicted RBP12.92□□□□□ -0.34
CLIP1-213ENST00000540338 METTL22Q9BUU2 404 aaPredicted RBP12.92□□□□□ -0.34
CLIP1-213ENST00000540338 KIF3AQ9Y496 699 aa12.92□□□□□ -0.34
CLIP1-213ENST00000540338 C3P01024 1663 aa12.92□□□□□ -0.34
CLIP1-213ENST00000540338 PROSER3Q2NL68 480 aa12.92□□□□□ -0.34
CLIP1-213ENST00000540338 CCDC57Q2TAC2 916 aa12.92□□□□□ -0.34
CLIP1-213ENST00000540338 NRKQ7Z2Y5 1582 aa12.92□□□□□ -0.34
CLIP1-213ENST00000540338 STARD3NLO95772 234 aa12.91□□□□□ -0.34
CLIP1-213ENST00000540338 IL2RBP14784 551 aa12.91□□□□□ -0.34
CLIP1-213ENST00000540338 MSNP26038 577 aaKnown RBP12.91□□□□□ -0.34
CLIP1-213ENST00000540338 CWC25Q9NXE8 425 aaPredicted RBP12.91□□□□□ -0.34
CLIP1-213ENST00000540338 ATP10DQ9P241 1426 aa12.91□□□□□ -0.34
CLIP1-213ENST00000540338 BLOC1S2Q6QNY1 142 aa12.91□□□□□ -0.34
CLIP1-213ENST00000540338 SUCLG2Q96I99 432 aa12.91□□□□□ -0.34
CLIP1-213ENST00000540338 ZBTB3Q9H5J0 574 aa12.91□□□□□ -0.34
CLIP1-213ENST00000540338 CEP126Q9P2H0 1117 aa12.91□□□□□ -0.34
CLIP1-213ENST00000540338 NCAPD2Q15021 1401 aa12.91□□□□□ -0.34
CLIP1-213ENST00000540338 ANKRD1Q15327 319 aa12.91□□□□□ -0.34
CLIP1-213ENST00000540338 FAM184AQ8NB25 1140 aa12.91□□□□□ -0.34
CLIP1-213ENST00000540338 CHMP4CQ96CF2 233 aa12.91□□□□□ -0.34
CLIP1-213ENST00000540338 LIMCH1Q9UPQ0 1083 aa12.91□□□□□ -0.34
CLIP1-213ENST00000540338 PCDH11XQ9BZA7 1347 aa12.9□□□□□ -0.34
CLIP1-213ENST00000540338 PCDH11YQ9BZA8 1340 aa12.9□□□□□ -0.34
CLIP1-213ENST00000540338 H3BQV1 296 aa12.9□□□□□ -0.34
CLIP1-213ENST00000540338 NASPP49321 788 aaPredicted RBP12.9□□□□□ -0.34
CLIP1-213ENST00000540338 IFFO2Q5TF58 517 aa12.9□□□□□ -0.34
CLIP1-213ENST00000540338 SETD1BQ9UPS6 1966 aaKnown RBP12.9□□□□□ -0.34
CLIP1-213ENST00000540338 PRAMEF22A3QJZ6 481 aa12.9□□□□□ -0.34
CLIP1-213ENST00000540338 RIMS1Q86UR5 1692 aaKnown RBP12.9□□□□□ -0.34
CLIP1-213ENST00000540338 CD2BP2O95400 341 aaKnown RBP12.89□□□□□ -0.35
CLIP1-213ENST00000540338 GCKRQ14397 625 aa12.89□□□□□ -0.35
CLIP1-213ENST00000540338 CCDC158Q5M9N0 1113 aa12.89□□□□□ -0.35
CLIP1-213ENST00000540338 ZGPATQ8N5A5 531 aaKnown RBP12.89□□□□□ -0.35
CLIP1-213ENST00000540338 POLA2Q14181 598 aa12.89□□□□□ -0.35
CLIP1-213ENST00000540338 TEX13AQ9BXU3 409 aaPredicted RBP12.89□□□□□ -0.35
CLIP1-213ENST00000540338 SLAIN2Q9P270 581 aa12.89□□□□□ -0.35
CLIP1-213ENST00000540338 USP16Q9Y5T5 823 aa12.89□□□□□ -0.35
CLIP1-213ENST00000540338 CEMIPQ8WUJ3 1361 aa12.89□□□□□ -0.35
CLIP1-213ENST00000540338 SGSM2O43147 1006 aa12.89□□□□□ -0.35
CLIP1-213ENST00000540338 EPB41L2O43491 1005 aaKnown RBP12.89□□□□□ -0.35
CLIP1-213ENST00000540338 PDCP20941 246 aa12.89□□□□□ -0.35
CLIP1-213ENST00000540338 C1orf167Q5SNV9 1468 aa12.89□□□□□ -0.35
CLIP1-213ENST00000540338 KRT32Q14532 448 aa12.89□□□□□ -0.35
CLIP1-213ENST00000540338 WASHC4Q2M389 1173 aa12.89□□□□□ -0.35
CLIP1-213ENST00000540338 LMBR1LQ6UX01 489 aa12.89□□□□□ -0.35
CLIP1-213ENST00000540338 NPHP1O15259 732 aa12.88□□□□□ -0.35
CLIP1-213ENST00000540338 ZRSR1Q15695 479 aaKnown RBP12.88□□□□□ -0.35
CLIP1-213ENST00000540338 KLHL40Q2TBA0 621 aa12.88□□□□□ -0.35
CLIP1-213ENST00000540338 NAP1L5Q96NT1 182 aaPredicted RBP12.88□□□□□ -0.35
CLIP1-213ENST00000540338 PLBD2Q8NHP8 589 aa12.88□□□□□ -0.35
CLIP1-213ENST00000540338 NEURL1BA8MQ27 555 aa12.88□□□□□ -0.35
CLIP1-213ENST00000540338 SH2B1Q9NRF2 756 aaPredicted RBP12.88□□□□□ -0.35
CLIP1-213ENST00000540338 AKAP12Q02952 1782 aa12.88□□□□□ -0.35
CLIP1-213ENST00000540338 TAOK2Q9UL54 1235 aa12.87□□□□□ -0.35
CLIP1-213ENST00000540338 TTC39AQ5SRH9 613 aa12.87□□□□□ -0.35
CLIP1-213ENST00000540338 INTS4Q96HW7 963 aaKnown RBP12.87□□□□□ -0.35
CLIP1-213ENST00000540338 SETD1AO15047 1707 aaKnown RBP12.87□□□□□ -0.35
CLIP1-213ENST00000540338 UNC5CLQ8IV45 518 aa12.87□□□□□ -0.35
CLIP1-213ENST00000540338 CCDC83Q8IWF9 413 aa12.87□□□□□ -0.35
CLIP1-213ENST00000540338 LARP6Q9BRS8 491 aaKnown RBP12.86□□□□□ -0.35
CLIP1-213ENST00000540338 KIF2CQ99661 725 aa12.86□□□□□ -0.35
CLIP1-213ENST00000540338 RGS12O14924 1447 aa12.86□□□□□ -0.35
CLIP1-213ENST00000540338 KLHDC4Q8TBB5 520 aa12.86□□□□□ -0.35
CLIP1-213ENST00000540338 CCDC85AQ96PX6 553 aaPredicted RBP12.86□□□□□ -0.35
CLIP1-213ENST00000540338 CNNM1Q9NRU3 951 aa12.86□□□□□ -0.35
CLIP1-213ENST00000540338 HSPA4P34932 840 aa12.85□□□□□ -0.35
CLIP1-213ENST00000540338 FKBP4Q02790 459 aaKnown RBP eCLIP12.85□□□□□ -0.35
CLIP1-213ENST00000540338 RBM8AQ9Y5S9 174 aaKnown RBP12.85□□□□□ -0.35
CLIP1-213ENST00000540338 SPATA31A3Q5VYP0 1347 aa12.85□□□□□ -0.35
CLIP1-213ENST00000540338 RAD50Q92878 1312 aa12.85□□□□□ -0.35
CLIP1-213ENST00000540338 GTF2E1P29083 439 aaPredicted RBP12.85□□□□□ -0.35
CLIP1-213ENST00000540338 NMIQ13287 307 aaPredicted RBP12.85□□□□□ -0.35
CLIP1-213ENST00000540338 LARP1BQ659C4 914 aaKnown RBP12.85□□□□□ -0.35
CLIP1-213ENST00000540338 AKAP2Q9Y2D5 859 aa12.85□□□□□ -0.35
CLIP1-213ENST00000540338 EXOC5O00471 708 aa12.85□□□□□ -0.35
CLIP1-213ENST00000540338 FIBPO43427 364 aa12.85□□□□□ -0.35
CLIP1-213ENST00000540338 PDIA4P13667 645 aaKnown RBP12.85□□□□□ -0.35
CLIP1-213ENST00000540338 ERVV-2B6SEH9 535 aa12.85□□□□□ -0.35
CLIP1-213ENST00000540338 IFIT1P09914 478 aaKnown RBP12.85□□□□□ -0.35
CLIP1-213ENST00000540338 TFCP2Q12800 502 aa12.84□□□□□ -0.35
CLIP1-213ENST00000540338 FAM43AQ8N2R8 423 aa12.84□□□□□ -0.35
CLIP1-213ENST00000540338 APPP05067 770 aa12.84□□□□□ -0.35
CLIP1-213ENST00000540338 XRCC6P12956 609 aaKnown RBP eCLIP12.84□□□□□ -0.35
CLIP1-213ENST00000540338 PALD1Q9ULE6 856 aa12.84□□□□□ -0.35
CLIP1-213ENST00000540338 STK3Q13188 491 aa12.84□□□□□ -0.35
CLIP1-213ENST00000540338 IFIT5Q13325 482 aaKnown RBP12.84□□□□□ -0.35
CLIP1-213ENST00000540338 MTX1Q13505 466 aa12.84□□□□□ -0.35
CLIP1-213ENST00000540338 HSP90AB3PQ58FF7 597 aa12.84□□□□□ -0.35
CLIP1-213ENST00000540338 U3KPZ7 1027 aaPredicted RBP12.84□□□□□ -0.35
CLIP1-213ENST00000540338 IL15P40933 162 aaPredicted RBP12.83□□□□□ -0.35
CLIP1-213ENST00000540338 TRDNQ13061 729 aa12.83□□□□□ -0.35
CLIP1-213ENST00000540338 HMG20BQ9P0W2 317 aa12.83□□□□□ -0.35
CLIP1-213ENST00000540338 SNX14Q9Y5W7 946 aa12.83□□□□□ -0.35
CLIP1-213ENST00000540338 A1BGP04217 495 aa12.83□□□□□ -0.36
CLIP1-213ENST00000540338 EAF2Q96CJ1 260 aaPredicted RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms