RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 GPATCH3Q96I76 525 aa13.41□□□□□ -0.26
SYNE1-237ENST00000539504 TRIM5Q9C035 493 aa13.41□□□□□ -0.26
SYNE1-237ENST00000539504 SH2B1Q9NRF2 756 aaPredicted RBP13.41□□□□□ -0.26
SYNE1-237ENST00000539504 TFIP11Q9UBB9 837 aaKnown RBP13.41□□□□□ -0.26
SYNE1-237ENST00000539504 PI4KAP2A4QPH2 592 aa13.4□□□□□ -0.26
SYNE1-237ENST00000539504 PI4KAP1Q8N8J0 262 aa13.4□□□□□ -0.26
SYNE1-237ENST00000539504 TNMDQ9H2S6 317 aa13.4□□□□□ -0.26
SYNE1-237ENST00000539504 FLT4P35916 1363 aa13.4□□□□□ -0.26
SYNE1-237ENST00000539504 FAM69CQ0P6D2 419 aa13.4□□□□□ -0.26
SYNE1-237ENST00000539504 SLC26A8Q96RN1 970 aa13.4□□□□□ -0.26
SYNE1-237ENST00000539504 KCNF1Q9H3M0 494 aa13.4□□□□□ -0.26
SYNE1-237ENST00000539504 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.4□□□□□ -0.27
SYNE1-237ENST00000539504 FAM200AQ8TCP9 573 aa13.4□□□□□ -0.27
SYNE1-237ENST00000539504 ROBO2Q9HCK4 1378 aa13.39□□□□□ -0.27
SYNE1-237ENST00000539504 STK3Q13188 491 aa13.39□□□□□ -0.27
SYNE1-237ENST00000539504 ME3Q16798 604 aa13.39□□□□□ -0.27
SYNE1-237ENST00000539504 VPS53Q5VIR6 699 aa13.39□□□□□ -0.27
SYNE1-237ENST00000539504 CCDC186Q7Z3E2 898 aa13.39□□□□□ -0.27
SYNE1-237ENST00000539504 C16orf45Q96MC5 204 aaPredicted RBP13.39□□□□□ -0.27
SYNE1-237ENST00000539504 C9orf78Q9NZ63 289 aaPredicted RBP13.39□□□□□ -0.27
SYNE1-237ENST00000539504 PLEKHG3A1L390 1219 aa13.39□□□□□ -0.27
SYNE1-237ENST00000539504 TYRO3Q06418 890 aa13.39□□□□□ -0.27
SYNE1-237ENST00000539504 ATP2B3Q16720 1220 aa13.39□□□□□ -0.27
SYNE1-237ENST00000539504 DNAAF4Q8WXU2 420 aa13.39□□□□□ -0.27
SYNE1-237ENST00000539504 LIG1P18858 919 aa13.39□□□□□ -0.27
SYNE1-237ENST00000539504 GTF2F1P35269 517 aaKnown RBP eCLIP13.39□□□□□ -0.27
SYNE1-237ENST00000539504 TTC6Q86TZ1 520 aa13.39□□□□□ -0.27
SYNE1-237ENST00000539504 BICD2Q8TD16 824 aa13.39□□□□□ -0.27
SYNE1-237ENST00000539504 IL17RAQ96F46 866 aa13.39□□□□□ -0.27
SYNE1-237ENST00000539504 FUCA2Q9BTY2 467 aa13.39□□□□□ -0.27
SYNE1-237ENST00000539504 DACT1Q9NYF0 836 aa13.38□□□□□ -0.27
SYNE1-237ENST00000539504 CHPF2Q9P2E5 772 aa13.38□□□□□ -0.27
SYNE1-237ENST00000539504 HTATSF1O43719 755 aaKnown RBP13.38□□□□□ -0.27
SYNE1-237ENST00000539504 ECHDC1Q9NTX5 307 aa13.38□□□□□ -0.27
SYNE1-237ENST00000539504 PA2G4Q9UQ80 394 aaKnown RBP13.38□□□□□ -0.27
SYNE1-237ENST00000539504 U2AF2P26368 475 aaKnown RBP eCLIP13.37□□□□□ -0.27
SYNE1-237ENST00000539504 POLA2Q14181 598 aa13.37□□□□□ -0.27
SYNE1-237ENST00000539504 ANO6Q4KMQ2 910 aa13.37□□□□□ -0.27
SYNE1-237ENST00000539504 CDC37L1Q7L3B6 337 aa13.37□□□□□ -0.27
SYNE1-237ENST00000539504 AACSQ86V21 672 aa13.37□□□□□ -0.27
SYNE1-237ENST00000539504 ZNF592Q92610 1267 aa13.37□□□□□ -0.27
SYNE1-237ENST00000539504 SIRT1Q96EB6 747 aa13.37□□□□□ -0.27
SYNE1-237ENST00000539504 SPATA32Q96LK8 384 aa13.37□□□□□ -0.27
SYNE1-237ENST00000539504 RBM8AQ9Y5S9 174 aaKnown RBP13.37□□□□□ -0.27
SYNE1-237ENST00000539504 TCHHQ07283 1943 aa13.37□□□□□ -0.27
SYNE1-237ENST00000539504 OVOS2A0A0J9YW53 1432 aa13.37□□□□□ -0.27
SYNE1-237ENST00000539504 USP6P35125 1406 aa13.37□□□□□ -0.27
SYNE1-237ENST00000539504 OVOS2Q6IE36 1432 aa13.37□□□□□ -0.27
SYNE1-237ENST00000539504 SBNO1A3KN83 1393 aa13.37□□□□□ -0.27
SYNE1-237ENST00000539504 LRMPQ12912 555 aa13.37□□□□□ -0.27
SYNE1-237ENST00000539504 IGSF1Q8N6C5 1336 aa13.37□□□□□ -0.27
SYNE1-237ENST00000539504 IGSF3O75054 1194 aa13.36□□□□□ -0.27
SYNE1-237ENST00000539504 DMTNQ08495 405 aa13.36□□□□□ -0.27
SYNE1-237ENST00000539504 CYB5RLQ6IPT4 315 aa13.36□□□□□ -0.27
SYNE1-237ENST00000539504 PDCP20941 246 aa13.36□□□□□ -0.27
SYNE1-237ENST00000539504 TPCN1Q9ULQ1 816 aa13.36□□□□□ -0.27
SYNE1-237ENST00000539504 ZSCAN20P17040 1043 aaPredicted RBP13.36□□□□□ -0.27
SYNE1-237ENST00000539504 ZSWIM6Q9HCJ5 1215 aa13.36□□□□□ -0.27
SYNE1-237ENST00000539504 PPP6R1Q9UPN7 881 aa13.36□□□□□ -0.27
SYNE1-237ENST00000539504 CREB3L3Q68CJ9 461 aa13.35□□□□□ -0.27
SYNE1-237ENST00000539504 BLOC1S2Q6QNY1 142 aa13.35□□□□□ -0.27
SYNE1-237ENST00000539504 TTC41PQ6P2S7 1318 aa13.35□□□□□ -0.27
SYNE1-237ENST00000539504 PSMA5P28066 241 aa13.35□□□□□ -0.27
SYNE1-237ENST00000539504 FAM227BQ96M60 508 aa13.35□□□□□ -0.27
SYNE1-237ENST00000539504 CBX8Q9HC52 389 aa13.35□□□□□ -0.27
SYNE1-237ENST00000539504 NRBP1Q9UHY1 535 aa13.35□□□□□ -0.27
SYNE1-237ENST00000539504 MRVI1Q9Y6F6 885 aa13.35□□□□□ -0.27
SYNE1-237ENST00000539504 MAP3K5Q99683 1374 aa13.35□□□□□ -0.27
SYNE1-237ENST00000539504 CCDC171Q6TFL3 1326 aa13.35□□□□□ -0.27
SYNE1-237ENST00000539504 TPD52L1Q16890 204 aaPredicted RBP13.35□□□□□ -0.27
SYNE1-237ENST00000539504 FSD1Q9BTV5 496 aa13.35□□□□□ -0.27
SYNE1-237ENST00000539504 CCDC8Q9H0W5 538 aaPredicted RBP13.35□□□□□ -0.27
SYNE1-237ENST00000539504 TNNT1P13805 278 aa13.34□□□□□ -0.27
SYNE1-237ENST00000539504 TEFQ10587 303 aa13.34□□□□□ -0.27
SYNE1-237ENST00000539504 TTC21AQ8NDW8 1320 aa13.34□□□□□ -0.27
SYNE1-237ENST00000539504 FOSBP53539 338 aa13.34□□□□□ -0.27
SYNE1-237ENST00000539504 CEBPZQ03701 1054 aaKnown RBP13.34□□□□□ -0.27
SYNE1-237ENST00000539504 NMIQ13287 307 aaPredicted RBP13.34□□□□□ -0.27
SYNE1-237ENST00000539504 RNF20Q5VTR2 975 aa13.34□□□□□ -0.27
SYNE1-237ENST00000539504 EVI5LQ96CN4 794 aa13.34□□□□□ -0.27
SYNE1-237ENST00000539504 SCAND2PQ9GZW5 306 aaPredicted RBP13.34□□□□□ -0.27
SYNE1-237ENST00000539504 BOLA2Q9H3K6 86 aa13.34□□□□□ -0.27
SYNE1-237ENST00000539504 USP31Q70CQ4 1352 aa13.34□□□□□ -0.27
SYNE1-237ENST00000539504 HSP90B1P14625 803 aaKnown RBP13.33□□□□□ -0.27
SYNE1-237ENST00000539504 ZNF165P49910 485 aa13.33□□□□□ -0.27
SYNE1-237ENST00000539504 FGD1P98174 961 aa13.33□□□□□ -0.27
SYNE1-237ENST00000539504 BEND3Q5T5X7 828 aa13.33□□□□□ -0.27
SYNE1-237ENST00000539504 TM6SF1Q9BZW5 370 aa13.33□□□□□ -0.27
SYNE1-237ENST00000539504 SIL1Q9H173 461 aa13.33□□□□□ -0.27
SYNE1-237ENST00000539504 DNAJC25Q9H1X3 360 aa13.33□□□□□ -0.27
SYNE1-237ENST00000539504 GOLGA6L19H0YKK7 550 aa13.33□□□□□ -0.28
SYNE1-237ENST00000539504 H3BQV1 296 aa13.33□□□□□ -0.28
SYNE1-237ENST00000539504 G3BP1Q13283 466 aaKnown RBP eCLIP13.33□□□□□ -0.28
SYNE1-237ENST00000539504 IFFO2Q5TF58 517 aa13.33□□□□□ -0.28
SYNE1-237ENST00000539504 LARP1Q6PKG0 1096 aaKnown RBP13.33□□□□□ -0.28
SYNE1-237ENST00000539504 HOXC9P31274 260 aa13.33□□□□□ -0.28
SYNE1-237ENST00000539504 ST3GAL1Q11201 340 aa13.33□□□□□ -0.28
SYNE1-237ENST00000539504 CLIP2Q9UDT6 1046 aa13.33□□□□□ -0.28
SYNE1-237ENST00000539504 KDRP35968 1356 aa13.33□□□□□ -0.28
SYNE1-237ENST00000539504 KCNQ3O43525 872 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms