RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 NHSL1Q5SYE7 1610 aa13.28□□□□□ -0.28
CLIP1-210ENST00000538120 ABCA3Q99758 1704 aa13.28□□□□□ -0.28
CLIP1-210ENST00000538120 TBC1D9Q6ZT07 1266 aa13.28□□□□□ -0.28
CLIP1-210ENST00000538120 PHF12Q96QT6 1004 aa13.28□□□□□ -0.28
CLIP1-210ENST00000538120 CHRM1P11229 460 aaPredicted RBP13.27□□□□□ -0.29
CLIP1-210ENST00000538120 EXOC6BQ9Y2D4 811 aa13.27□□□□□ -0.29
CLIP1-210ENST00000538120 NBPF7P0C2Y1 421 aaPredicted RBP13.27□□□□□ -0.29
CLIP1-210ENST00000538120 TOM1L2Q6ZVM7 507 aa13.27□□□□□ -0.29
CLIP1-210ENST00000538120 ZNF496Q96IT1 587 aaPredicted RBP13.27□□□□□ -0.29
CLIP1-210ENST00000538120 DDX21Q9NR30 783 aaKnown RBP eCLIP13.27□□□□□ -0.29
CLIP1-210ENST00000538120 HYPKQ9NX55 129 aa13.27□□□□□ -0.29
CLIP1-210ENST00000538120 KSR2Q6VAB6 950 aa13.26□□□□□ -0.29
CLIP1-210ENST00000538120 SSH3Q8TE77 659 aa13.26□□□□□ -0.29
CLIP1-210ENST00000538120 MAP3K2Q9Y2U5 619 aa13.26□□□□□ -0.29
CLIP1-210ENST00000538120 IBTKQ9P2D0 1353 aaPredicted RBP13.26□□□□□ -0.29
CLIP1-210ENST00000538120 HSP90AB1P08238 724 aaKnown RBP13.25□□□□□ -0.29
CLIP1-210ENST00000538120 FAM43AQ8N2R8 423 aa13.25□□□□□ -0.29
CLIP1-210ENST00000538120 ZNF579Q8NAF0 562 aaKnown RBP13.25□□□□□ -0.29
CLIP1-210ENST00000538120 CARD10Q9BWT7 1032 aa13.25□□□□□ -0.29
CLIP1-210ENST00000538120 SALL3Q9BXA9 1300 aa13.25□□□□□ -0.29
CLIP1-210ENST00000538120 C5P01031 1676 aa13.25□□□□□ -0.29
CLIP1-210ENST00000538120 RBM25P49756 843 aaKnown RBP13.25□□□□□ -0.29
CLIP1-210ENST00000538120 CDC45O75419 566 aa13.24□□□□□ -0.29
CLIP1-210ENST00000538120 LARP1Q6PKG0 1096 aaKnown RBP13.24□□□□□ -0.29
CLIP1-210ENST00000538120 ZCRB1Q8TBF4 217 aaKnown RBP13.24□□□□□ -0.29
CLIP1-210ENST00000538120 OSBPL3Q9H4L5 887 aa13.24□□□□□ -0.29
CLIP1-210ENST00000538120 PPP1R42Q7Z4L9 355 aa13.24□□□□□ -0.29
CLIP1-210ENST00000538120 ALDH1L1O75891 902 aa13.23□□□□□ -0.29
CLIP1-210ENST00000538120 CABP4P57796 275 aa13.23□□□□□ -0.29
CLIP1-210ENST00000538120 LRP10Q7Z4F1 713 aa13.23□□□□□ -0.29
CLIP1-210ENST00000538120 KIF12Q96FN5 646 aa13.23□□□□□ -0.29
CLIP1-210ENST00000538120 LRRCC1Q9C099 1032 aa13.23□□□□□ -0.29
CLIP1-210ENST00000538120 RRAGDQ9NQL2 400 aaPredicted RBP13.23□□□□□ -0.29
CLIP1-210ENST00000538120 USP16Q9Y5T5 823 aa13.23□□□□□ -0.29
CLIP1-210ENST00000538120 SDSP20132 328 aa13.23□□□□□ -0.29
CLIP1-210ENST00000538120 PDE1AP54750 535 aa13.23□□□□□ -0.29
CLIP1-210ENST00000538120 GLI3P10071 1580 aa13.22□□□□□ -0.29
CLIP1-210ENST00000538120 NKX1-1Q15270 411 aaPredicted RBP13.22□□□□□ -0.29
CLIP1-210ENST00000538120 STRN4Q9NRL3 753 aa13.22□□□□□ -0.29
CLIP1-210ENST00000538120 PARP4Q9UKK3 1724 aaKnown RBP13.22□□□□□ -0.29
CLIP1-210ENST00000538120 PCDH11XQ9BZA7 1347 aa13.22□□□□□ -0.29
CLIP1-210ENST00000538120 PCDH11YQ9BZA8 1340 aa13.22□□□□□ -0.29
CLIP1-210ENST00000538120 SNRPA1P09661 255 aaKnown RBP13.22□□□□□ -0.29
CLIP1-210ENST00000538120 HSP90B1P14625 803 aaKnown RBP13.22□□□□□ -0.29
CLIP1-210ENST00000538120 IL2RBP14784 551 aa13.22□□□□□ -0.29
CLIP1-210ENST00000538120 CWF19L2Q2TBE0 894 aaKnown RBP13.22□□□□□ -0.29
CLIP1-210ENST00000538120 GZF1Q9H116 711 aaPredicted RBP13.22□□□□□ -0.29
CLIP1-210ENST00000538120 AIMP1Q12904 312 aaKnown RBP13.21□□□□□ -0.29
CLIP1-210ENST00000538120 TTC5Q8N0Z6 440 aa13.21□□□□□ -0.29
CLIP1-210ENST00000538120 FMNL2Q96PY5 1086 aa13.21□□□□□ -0.29
CLIP1-210ENST00000538120 KIF2CQ99661 725 aa13.21□□□□□ -0.29
CLIP1-210ENST00000538120 MAP3K13O43283 966 aa13.21□□□□□ -0.29
CLIP1-210ENST00000538120 MYL6BP14649 208 aa13.21□□□□□ -0.29
CLIP1-210ENST00000538120 LINS1Q8NG48 757 aa13.21□□□□□ -0.29
CLIP1-210ENST00000538120 SRGAP3O43295 1099 aa13.2□□□□□ -0.3
CLIP1-210ENST00000538120 IGKV5-2P06315 115 aa13.2□□□□□ -0.3
CLIP1-210ENST00000538120 EVA1CP58658 441 aa13.2□□□□□ -0.3
CLIP1-210ENST00000538120 XAGE3Q8WTP9 111 aa13.2□□□□□ -0.3
CLIP1-210ENST00000538120 UTYO14607 1347 aa13.2□□□□□ -0.3
CLIP1-210ENST00000538120 ERVV-2B6SEH9 535 aa13.2□□□□□ -0.3
CLIP1-210ENST00000538120 DDX58O95786 925 aaKnown RBP13.2□□□□□ -0.3
CLIP1-210ENST00000538120 MTX1Q13505 466 aa13.2□□□□□ -0.3
CLIP1-210ENST00000538120 COPS6Q7L5N1 327 aa13.2□□□□□ -0.3
CLIP1-210ENST00000538120 FGD1P98174 961 aa13.19□□□□□ -0.3
CLIP1-210ENST00000538120 TSHZ3Q63HK5 1081 aa13.19□□□□□ -0.3
CLIP1-210ENST00000538120 KAZALD1Q96I82 304 aa13.19□□□□□ -0.3
CLIP1-210ENST00000538120 STAP2Q9UGK3 403 aa13.19□□□□□ -0.3
CLIP1-210ENST00000538120 SHANK3Q9BYB0 1731 aa13.19□□□□□ -0.3
CLIP1-210ENST00000538120 RAB11FIP3O75154 756 aa13.19□□□□□ -0.3
CLIP1-210ENST00000538120 SURF6O75683 361 aaKnown RBP13.19□□□□□ -0.3
CLIP1-210ENST00000538120 XRCC6P12956 609 aaKnown RBP eCLIP13.19□□□□□ -0.3
CLIP1-210ENST00000538120 PIP4K2AP48426 406 aaPredicted RBP13.19□□□□□ -0.3
CLIP1-210ENST00000538120 MX1P20591 662 aa13.18□□□□□ -0.3
CLIP1-210ENST00000538120 PANK2Q9BZ23 570 aa13.18□□□□□ -0.3
CLIP1-210ENST00000538120 C9orf78Q9NZ63 289 aaPredicted RBP13.18□□□□□ -0.3
CLIP1-210ENST00000538120 CCDC9Q9Y3X0 531 aaKnown RBP13.18□□□□□ -0.3
CLIP1-210ENST00000538120 MCM4P33991 863 aa13.18□□□□□ -0.3
CLIP1-210ENST00000538120 RIC3Q7Z5B4 369 aa13.18□□□□□ -0.3
CLIP1-210ENST00000538120 RHPN1Q8TCX5 695 aa13.18□□□□□ -0.3
CLIP1-210ENST00000538120 DDX54Q8TDD1 881 aaKnown RBP13.18□□□□□ -0.3
CLIP1-210ENST00000538120 SUCLG2Q96I99 432 aa13.18□□□□□ -0.3
CLIP1-210ENST00000538120 IL1RAPL2Q9NP60 686 aa13.18□□□□□ -0.3
CLIP1-210ENST00000538120 GRM8O00222 908 aa13.17□□□□□ -0.3
CLIP1-210ENST00000538120 METTL22Q9BUU2 404 aaPredicted RBP13.17□□□□□ -0.3
CLIP1-210ENST00000538120 BTG4Q9NY30 223 aa13.17□□□□□ -0.3
CLIP1-210ENST00000538120 L1TD1Q5T7N2 865 aaKnown RBP13.17□□□□□ -0.3
CLIP1-210ENST00000538120 BCL11BQ9C0K0 894 aaPredicted RBP13.17□□□□□ -0.3
CLIP1-210ENST00000538120 ROBO1Q9Y6N7 1651 aa13.16□□□□□ -0.3
CLIP1-210ENST00000538120 KCPQ6ZWJ8 1503 aa13.16□□□□□ -0.3
CLIP1-210ENST00000538120 NEURL1BA8MQ27 555 aa13.16□□□□□ -0.3
CLIP1-210ENST00000538120 NBPF26B4DH59 902 aa13.16□□□□□ -0.3
CLIP1-210ENST00000538120 RIOK3O14730 519 aaKnown RBP13.16□□□□□ -0.3
CLIP1-210ENST00000538120 NBPF14Q5TI25 921 aa13.16□□□□□ -0.3
CLIP1-210ENST00000538120 NBPF10Q6P3W6 841 aaKnown RBP13.16□□□□□ -0.3
CLIP1-210ENST00000538120 ANKRD13DQ6ZTN6 518 aa13.16□□□□□ -0.3
CLIP1-210ENST00000538120 NBPF15Q8N660 670 aa13.16□□□□□ -0.3
CLIP1-210ENST00000538120 SNX21Q969T3 373 aa13.16□□□□□ -0.3
CLIP1-210ENST00000538120 USP26Q9BXU7 913 aa13.16□□□□□ -0.3
CLIP1-210ENST00000538120 PCDHB13Q9Y5F0 798 aa13.16□□□□□ -0.3
CLIP1-210ENST00000538120 AHDC1Q5TGY3 1603 aaPredicted RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms