RNA–Protein interactions for RNA: ENST00000533761.5

CCDC90B-218, Transcript of coiled-coil domain containing 90B, humanhuman

TSL 5

Gene CCDC90B, Length 1,587 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC90B-218ENST00000533761 CHMP4AQ9BY43 222 aa14.05□□□□□ -0.16
CCDC90B-218ENST00000533761 RNF123Q5XPI4 1314 aa14.05□□□□□ -0.16
CCDC90B-218ENST00000533761 NHSQ6T4R5 1651 aa14.05□□□□□ -0.16
CCDC90B-218ENST00000533761 TOGARAM1Q9Y4F4 1720 aa14.05□□□□□ -0.16
CCDC90B-218ENST00000533761 ITGB4P16144 1822 aa14.05□□□□□ -0.16
CCDC90B-218ENST00000533761 BTBD11A6QL63 1104 aa14.05□□□□□ -0.16
CCDC90B-218ENST00000533761 IRX2Q9BZI1 471 aaPredicted RBP14.05□□□□□ -0.16
CCDC90B-218ENST00000533761 MRC1P22897 1456 aa14.04□□□□□ -0.16
CCDC90B-218ENST00000533761 ZNF853P0CG23 659 aa14.04□□□□□ -0.16
CCDC90B-218ENST00000533761 RRP1P56182 461 aaKnown RBP14.04□□□□□ -0.16
CCDC90B-218ENST00000533761 PTF1AQ7RTS3 328 aa14.04□□□□□ -0.16
CCDC90B-218ENST00000533761 SMARCC1Q92922 1105 aaPredicted RBP14.04□□□□□ -0.16
CCDC90B-218ENST00000533761 TSR2Q969E8 191 aaKnown RBP14.04□□□□□ -0.16
CCDC90B-218ENST00000533761 SOS1Q07889 1333 aaPredicted RBP14.03□□□□□ -0.16
CCDC90B-218ENST00000533761 APBA3O96018 575 aa14.03□□□□□ -0.16
CCDC90B-218ENST00000533761 CHL1O00533 1208 aa14.02□□□□□ -0.16
CCDC90B-218ENST00000533761 ARHGAP33O14559 1287 aa14.02□□□□□ -0.16
CCDC90B-218ENST00000533761 CANXP27824 592 aaKnown RBP14.02□□□□□ -0.16
CCDC90B-218ENST00000533761 ZNF790Q6PG37 636 aa14.02□□□□□ -0.16
CCDC90B-218ENST00000533761 TTC5Q8N0Z6 440 aa14.02□□□□□ -0.16
CCDC90B-218ENST00000533761 MBIPQ9NS73 344 aa14.02□□□□□ -0.16
CCDC90B-218ENST00000533761 TSPYL4Q9UJ04 414 aa14.02□□□□□ -0.16
CCDC90B-218ENST00000533761 PLSCR1O15162 318 aa14.01□□□□□ -0.17
CCDC90B-218ENST00000533761 EXOSC9Q06265 439 aaKnown RBP14.01□□□□□ -0.17
CCDC90B-218ENST00000533761 ATG3Q9NT62 314 aa14.01□□□□□ -0.17
CCDC90B-218ENST00000533761 ASAP1Q9ULH1 1129 aa14.01□□□□□ -0.17
CCDC90B-218ENST00000533761 BTAF1O14981 1849 aa14.01□□□□□ -0.17
CCDC90B-218ENST00000533761 MS4A1P11836 297 aa14□□□□□ -0.17
CCDC90B-218ENST00000533761 ALDH1L2Q3SY69 923 aa14□□□□□ -0.17
CCDC90B-218ENST00000533761 MIS18AQ9NYP9 233 aa14□□□□□ -0.17
CCDC90B-218ENST00000533761 SIPA1L3O60292 1781 aaPredicted RBP14□□□□□ -0.17
CCDC90B-218ENST00000533761 BAG6P46379 1132 aa14□□□□□ -0.17
CCDC90B-218ENST00000533761 SLC39A6Q13433 755 aa14□□□□□ -0.17
CCDC90B-218ENST00000533761 UPF1Q92900 1129 aaKnown RBP eCLIP14□□□□□ -0.17
CCDC90B-218ENST00000533761 PALLDQ8WX93 1383 aa13.99□□□□□ -0.17
CCDC90B-218ENST00000533761 KIF16BQ96L93 1317 aa13.99□□□□□ -0.17
CCDC90B-218ENST00000533761 TK2O00142 265 aa13.99□□□□□ -0.17
CCDC90B-218ENST00000533761 HMGB2P26583 209 aaKnown RBP13.99□□□□□ -0.17
CCDC90B-218ENST00000533761 RARSP54136 660 aaKnown RBP13.99□□□□□ -0.17
CCDC90B-218ENST00000533761 IPO8O15397 1037 aaKnown RBP13.98□□□□□ -0.17
CCDC90B-218ENST00000533761 PTCD1O75127 700 aaKnown RBP13.98□□□□□ -0.17
CCDC90B-218ENST00000533761 TWISTNBQ3B726 338 aaPredicted RBP13.98□□□□□ -0.17
CCDC90B-218ENST00000533761 SMC4Q9NTJ3 1288 aa13.98□□□□□ -0.17
CCDC90B-218ENST00000533761 FMNL2Q96PY5 1086 aa13.97□□□□□ -0.17
CCDC90B-218ENST00000533761 TNS1Q9HBL0 1735 aaKnown RBP13.97□□□□□ -0.17
CCDC90B-218ENST00000533761 LOC102724428A0A0B4J2F2 783 aa13.96□□□□□ -0.17
CCDC90B-218ENST00000533761 HRO43593 1189 aa13.96□□□□□ -0.17
CCDC90B-218ENST00000533761 SIK1P57059 783 aa13.96□□□□□ -0.17
CCDC90B-218ENST00000533761 SLC27A3Q5K4L6 730 aa13.96□□□□□ -0.17
CCDC90B-218ENST00000533761 ZNF496Q96IT1 587 aaPredicted RBP13.96□□□□□ -0.17
CCDC90B-218ENST00000533761 PCDHGA4Q9Y5G9 962 aa13.96□□□□□ -0.17
CCDC90B-218ENST00000533761 KCNQ3O43525 872 aa13.96□□□□□ -0.18
CCDC90B-218ENST00000533761 EN1Q05925 392 aaPredicted RBP13.96□□□□□ -0.18
CCDC90B-218ENST00000533761 VSIG10Q8N0Z9 540 aa13.96□□□□□ -0.18
CCDC90B-218ENST00000533761 PAPPAQ13219 1627 aa13.95□□□□□ -0.18
CCDC90B-218ENST00000533761 HOXB7P09629 217 aa13.95□□□□□ -0.18
CCDC90B-218ENST00000533761 ATP6V1AP38606 617 aa13.95□□□□□ -0.18
CCDC90B-218ENST00000533761 BRPF1P55201 1214 aaPredicted RBP13.95□□□□□ -0.18
CCDC90B-218ENST00000533761 EIF4A1P60842 406 aaKnown RBP13.95□□□□□ -0.18
CCDC90B-218ENST00000533761 PDE3AQ14432 1141 aa13.95□□□□□ -0.18
CCDC90B-218ENST00000533761 TXNRD1Q16881 649 aa13.95□□□□□ -0.18
CCDC90B-218ENST00000533761 KCTD12Q96CX2 325 aaKnown RBP13.95□□□□□ -0.18
CCDC90B-218ENST00000533761 CAMKK2Q96RR4 588 aa13.95□□□□□ -0.18
CCDC90B-218ENST00000533761 TEX13AQ9BXU3 409 aaPredicted RBP13.95□□□□□ -0.18
CCDC90B-218ENST00000533761 CCNL1Q9UK58 526 aaPredicted RBP13.95□□□□□ -0.18
CCDC90B-218ENST00000533761 SLC34A2O95436 690 aa13.94□□□□□ -0.18
CCDC90B-218ENST00000533761 SNRPA1P09661 255 aaKnown RBP13.94□□□□□ -0.18
CCDC90B-218ENST00000533761 DEFB132Q7Z7B7 95 aa13.94□□□□□ -0.18
CCDC90B-218ENST00000533761 KDM3BQ7LBC6 1761 aa13.94□□□□□ -0.18
CCDC90B-218ENST00000533761 RGPD3A6NKT7 1758 aaPredicted RBP13.93□□□□□ -0.18
CCDC90B-218ENST00000533761 RGPD4Q7Z3J3 1758 aa13.93□□□□□ -0.18
CCDC90B-218ENST00000533761 HEG1Q9ULI3 1381 aa13.93□□□□□ -0.18
CCDC90B-218ENST00000533761 KIF3CO14782 793 aa13.93□□□□□ -0.18
CCDC90B-218ENST00000533761 VAMP4O75379 141 aa13.93□□□□□ -0.18
CCDC90B-218ENST00000533761 BCAR3O75815 825 aa13.93□□□□□ -0.18
CCDC90B-218ENST00000533761 ZKSCAN2Q63HK3 967 aa13.93□□□□□ -0.18
CCDC90B-218ENST00000533761 IFNLR1Q8IU57 520 aaPredicted RBP13.93□□□□□ -0.18
CCDC90B-218ENST00000533761 FTSJ3Q8IY81 847 aaKnown RBP13.93□□□□□ -0.18
CCDC90B-218ENST00000533761 FRAT1Q92837 279 aaPredicted RBP13.93□□□□□ -0.18
CCDC90B-218ENST00000533761 LY75O60449 1722 aa13.93□□□□□ -0.18
CCDC90B-218ENST00000533761 KCPQ6ZWJ8 1503 aa13.93□□□□□ -0.18
CCDC90B-218ENST00000533761 UBR2Q8IWV8 1755 aa13.93□□□□□ -0.18
CCDC90B-218ENST00000533761 PSDA5PKW4 1024 aaPredicted RBP13.92□□□□□ -0.18
CCDC90B-218ENST00000533761 GIGYF1O75420 1035 aaPredicted RBP13.92□□□□□ -0.18
CCDC90B-218ENST00000533761 AAMPQ13685 434 aa13.92□□□□□ -0.18
CCDC90B-218ENST00000533761 EZH2Q15910 746 aaKnown RBP13.92□□□□□ -0.18
CCDC90B-218ENST00000533761 SSH1Q8WYL5 1049 aa13.92□□□□□ -0.18
CCDC90B-218ENST00000533761 STK31Q9BXU1 1019 aa13.92□□□□□ -0.18
CCDC90B-218ENST00000533761 STARD3NLO95772 234 aa13.92□□□□□ -0.18
CCDC90B-218ENST00000533761 IRX6P78412 446 aaPredicted RBP13.92□□□□□ -0.18
CCDC90B-218ENST00000533761 IFFO2Q5TF58 517 aa13.92□□□□□ -0.18
CCDC90B-218ENST00000533761 CCDC30Q5VVM6 783 aa13.92□□□□□ -0.18
CCDC90B-218ENST00000533761 C8orf58Q8NAV2 365 aa13.92□□□□□ -0.18
CCDC90B-218ENST00000533761 SLC4A9Q96Q91 983 aa13.92□□□□□ -0.18
CCDC90B-218ENST00000533761 PPP4R2Q9NY27 417 aa13.92□□□□□ -0.18
CCDC90B-218ENST00000533761 ZNF831Q5JPB2 1677 aa13.91□□□□□ -0.18
CCDC90B-218ENST00000533761 ELL2O00472 640 aaPredicted RBP13.91□□□□□ -0.18
CCDC90B-218ENST00000533761 ARHGAP45Q92619 1136 aa13.91□□□□□ -0.18
CCDC90B-218ENST00000533761 CHMP4BQ9H444 224 aaKnown RBP13.91□□□□□ -0.18
CCDC90B-218ENST00000533761 LRRC4BQ9NT99 713 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms