RNA–Protein interactions for RNA: ENST00000533123.5

SMPD1-208, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 2,211 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-208ENST00000533123 INTS3Q68E01 1043 aaKnown RBP23.32■■□□□ 1.32
SMPD1-208ENST00000533123 ARXQ96QS3 562 aa23.32■■□□□ 1.32
SMPD1-208ENST00000533123 TXNRD1Q16881 649 aa23.31■■□□□ 1.32
SMPD1-208ENST00000533123 SLC27A3Q5K4L6 730 aa23.3■■□□□ 1.32
SMPD1-208ENST00000533123 TNS1Q9HBL0 1735 aaKnown RBP23.3■■□□□ 1.32
SMPD1-208ENST00000533123 EIF5P55010 431 aaKnown RBP23.29■■□□□ 1.32
SMPD1-208ENST00000533123 NPM2Q86SE8 214 aaKnown RBP23.29■■□□□ 1.32
SMPD1-208ENST00000533123 TAF1LQ8IZX4 1826 aa23.29■■□□□ 1.32
SMPD1-208ENST00000533123 CNTNAP4Q9C0A0 1308 aa23.29■■□□□ 1.32
SMPD1-208ENST00000533123 ZBTB3Q9H5J0 574 aa23.29■■□□□ 1.32
SMPD1-208ENST00000533123 CCT4P50991 539 aaKnown RBP23.28■■□□□ 1.32
SMPD1-208ENST00000533123 PLBD2Q8NHP8 589 aa23.28■■□□□ 1.32
SMPD1-208ENST00000533123 RC3H1Q5TC82 1133 aaKnown RBP23.27■■□□□ 1.32
SMPD1-208ENST00000533123 SMIM5Q71RC9 77 aa23.27■■□□□ 1.32
SMPD1-208ENST00000533123 TBC1D2BQ9UPU7 963 aa23.27■■□□□ 1.32
SMPD1-208ENST00000533123 RREB1Q92766 1687 aa23.27■■□□□ 1.32
SMPD1-208ENST00000533123 BEND3Q5T5X7 828 aa23.27■■□□□ 1.31
SMPD1-208ENST00000533123 ZBTB40Q9NUA8 1239 aa23.27■■□□□ 1.31
SMPD1-208ENST00000533123 KIF6Q6ZMV9 814 aa23.26■■□□□ 1.31
SMPD1-208ENST00000533123 ZBTB7BO15156 539 aaPredicted RBP23.25■■□□□ 1.31
SMPD1-208ENST00000533123 GNPATO15228 680 aa23.25■■□□□ 1.31
SMPD1-208ENST00000533123 DZIP3Q86Y13 1208 aaKnown RBP23.25■■□□□ 1.31
SMPD1-208ENST00000533123 METTL22Q9BUU2 404 aaPredicted RBP23.25■■□□□ 1.31
SMPD1-208ENST00000533123 SRCIN1Q9C0H9 1055 aa23.25■■□□□ 1.31
SMPD1-208ENST00000533123 PXDNLA1KZ92 1463 aa23.25■■□□□ 1.31
SMPD1-208ENST00000533123 EN1Q05925 392 aaPredicted RBP23.24■■□□□ 1.31
SMPD1-208ENST00000533123 MYD88Q99836 296 aa23.24■■□□□ 1.31
SMPD1-208ENST00000533123 C4BP0C0L5 1744 aa23.24■■□□□ 1.31
SMPD1-208ENST00000533123 CWF19L2Q2TBE0 894 aaKnown RBP23.24■■□□□ 1.31
SMPD1-208ENST00000533123 AMIGO3Q86WK7 504 aa23.24■■□□□ 1.31
SMPD1-208ENST00000533123 COL15A1P39059 1388 aa23.23■■□□□ 1.31
SMPD1-208ENST00000533123 MAP3K15Q6ZN16 1313 aa23.23■■□□□ 1.31
SMPD1-208ENST00000533123 RPS6KA4O75676 772 aa23.23■■□□□ 1.31
SMPD1-208ENST00000533123 SF3B2Q13435 895 aaKnown RBP23.23■■□□□ 1.31
SMPD1-208ENST00000533123 AK7Q96M32 723 aa23.23■■□□□ 1.31
SMPD1-208ENST00000533123 ARFGEF2Q9Y6D5 1785 aa23.23■■□□□ 1.31
SMPD1-208ENST00000533123 NEXNQ0ZGT2 675 aa23.23■■□□□ 1.31
SMPD1-208ENST00000533123 ATP10DQ9P241 1426 aa23.22■■□□□ 1.31
SMPD1-208ENST00000533123 IGKV5-2P06315 115 aa23.22■■□□□ 1.31
SMPD1-208ENST00000533123 RTCBQ9Y3I0 505 aaKnown RBP23.22■■□□□ 1.31
SMPD1-208ENST00000533123 ATP5J2-PTCD1G3V325 749 aa23.21■■□□□ 1.31
SMPD1-208ENST00000533123 EZH2Q15910 746 aaKnown RBP23.21■■□□□ 1.31
SMPD1-208ENST00000533123 HLFQ16534 295 aa23.21■■□□□ 1.31
SMPD1-208ENST00000533123 LINS1Q8NG48 757 aa23.21■■□□□ 1.31
SMPD1-208ENST00000533123 MEIS3Q99687 375 aa23.21■■□□□ 1.31
SMPD1-208ENST00000533123 RWDD1Q9H446 243 aaPredicted RBP23.21■■□□□ 1.31
SMPD1-208ENST00000533123 DEFB132Q7Z7B7 95 aa23.2■■□□□ 1.3
SMPD1-208ENST00000533123 CAMKK2Q96RR4 588 aa23.2■■□□□ 1.3
SMPD1-208ENST00000533123 NUP188Q5SRE5 1749 aa23.2■■□□□ 1.3
SMPD1-208ENST00000533123 PHF14O94880 888 aa23.2■■□□□ 1.3
SMPD1-208ENST00000533123 USP44Q9H0E7 712 aa23.19■■□□□ 1.3
SMPD1-208ENST00000533123 C1orf115Q9H7X2 142 aa23.19■■□□□ 1.3
SMPD1-208ENST00000533123 N4BP2Q86UW6 1770 aaPredicted RBP23.19■■□□□ 1.3
SMPD1-208ENST00000533123 NEURL1BA8MQ27 555 aa23.18■■□□□ 1.3
SMPD1-208ENST00000533123 RGS3P49796 1198 aa23.18■■□□□ 1.3
SMPD1-208ENST00000533123 GIGYF2Q6Y7W6 1299 aaKnown RBP23.18■■□□□ 1.3
SMPD1-208ENST00000533123 ALDH1L1O75891 902 aa23.18■■□□□ 1.3
SMPD1-208ENST00000533123 BAG6P46379 1132 aa23.18■■□□□ 1.3
SMPD1-208ENST00000533123 CHMP4BQ9H444 224 aaKnown RBP23.18■■□□□ 1.3
SMPD1-208ENST00000533123 A0A087WZG4 1122 aa23.17■■□□□ 1.3
SMPD1-208ENST00000533123 ERVV-1B6SEH8 477 aa23.17■■□□□ 1.3
SMPD1-208ENST00000533123 CAMTA2O94983 1202 aa23.17■■□□□ 1.3
SMPD1-208ENST00000533123 TCIRG1Q13488 830 aa23.17■■□□□ 1.3
SMPD1-208ENST00000533123 RGPD3A6NKT7 1758 aaPredicted RBP23.17■■□□□ 1.3
SMPD1-208ENST00000533123 RGPD4Q7Z3J3 1758 aa23.17■■□□□ 1.3
SMPD1-208ENST00000533123 ARHGEF1Q92888 912 aaKnown RBP23.17■■□□□ 1.3
SMPD1-208ENST00000533123 NBPF7P0C2Y1 421 aaPredicted RBP23.16■■□□□ 1.3
SMPD1-208ENST00000533123 HDAC1Q13547 482 aaPredicted RBP23.16■■□□□ 1.3
SMPD1-208ENST00000533123 TRAPPC3LQ5T215 181 aa23.16■■□□□ 1.3
SMPD1-208ENST00000533123 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.15■■□□□ 1.3
SMPD1-208ENST00000533123 HMGB2P26583 209 aaKnown RBP23.15■■□□□ 1.3
SMPD1-208ENST00000533123 GCKRQ14397 625 aa23.15■■□□□ 1.3
SMPD1-208ENST00000533123 ZNF827Q17R98 1081 aa23.15■■□□□ 1.3
SMPD1-208ENST00000533123 C9orf78Q9NZ63 289 aaPredicted RBP23.15■■□□□ 1.3
SMPD1-208ENST00000533123 MSH5O43196 834 aa23.14■■□□□ 1.3
SMPD1-208ENST00000533123 NUP98P52948 1817 aa23.14■■□□□ 1.3
SMPD1-208ENST00000533123 GPTP24298 496 aa23.14■■□□□ 1.29
SMPD1-208ENST00000533123 SRP68Q9UHB9 627 aaKnown RBP23.14■■□□□ 1.29
SMPD1-208ENST00000533123 UBR3Q6ZT12 1888 aa23.14■■□□□ 1.29
SMPD1-208ENST00000533123 GNAI3P08754 354 aa23.13■■□□□ 1.29
SMPD1-208ENST00000533123 CCDC125Q86Z20 511 aa23.13■■□□□ 1.29
SMPD1-208ENST00000533123 AKT1S1Q96B36 256 aa23.13■■□□□ 1.29
SMPD1-208ENST00000533123 ISCA1Q9BUE6 129 aa23.13■■□□□ 1.29
SMPD1-208ENST00000533123 TFCP2L1Q9NZI6 479 aa23.13■■□□□ 1.29
SMPD1-208ENST00000533123 NARFQ9UHQ1 456 aa23.13■■□□□ 1.29
SMPD1-208ENST00000533123 UBTFL1P0CB47 393 aaPredicted RBP23.13■■□□□ 1.29
SMPD1-208ENST00000533123 RFC4P35249 363 aa23.13■■□□□ 1.29
SMPD1-208ENST00000533123 HSP90AB3PQ58FF7 597 aa23.13■■□□□ 1.29
SMPD1-208ENST00000533123 AFDNP55196 1824 aaKnown RBP23.13■■□□□ 1.29
SMPD1-208ENST00000533123 GRM8O00222 908 aa23.12■■□□□ 1.29
SMPD1-208ENST00000533123 ZPR1O75312 459 aa23.12■■□□□ 1.29
SMPD1-208ENST00000533123 USPL1Q5W0Q7 1092 aa23.12■■□□□ 1.29
SMPD1-208ENST00000533123 JARID2Q92833 1246 aaPredicted RBP23.12■■□□□ 1.29
SMPD1-208ENST00000533123 CWC25Q9NXE8 425 aaPredicted RBP23.12■■□□□ 1.29
SMPD1-208ENST00000533123 PDZRN3Q9UPQ7 1066 aa23.12■■□□□ 1.29
SMPD1-208ENST00000533123 ADRA2BP18089 450 aa23.11■■□□□ 1.29
SMPD1-208ENST00000533123 SSFA2P28290 1259 aa23.11■■□□□ 1.29
SMPD1-208ENST00000533123 CCDC191Q8NCU4 936 aa23.11■■□□□ 1.29
SMPD1-208ENST00000533123 GNAI2P04899 355 aa23.1■■□□□ 1.29
SMPD1-208ENST00000533123 TRIM28Q13263 835 aaKnown RBP23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms