RNA–Protein interactions for RNA: ENST00000533078.5

CMTM1-216, Transcript of CKLF like MARVEL transmembrane domain containing 1, humanhuman

TSL 1 (best)

Gene CMTM1, Length 565 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM1-216ENST00000533078 COL11A2P13942 1736 aaPredicted RBP15.48■□□□□ 0.07
CMTM1-216ENST00000533078 POTECB2RU33 542 aa15.48■□□□□ 0.07
CMTM1-216ENST00000533078 A1BGP04217 495 aa15.48■□□□□ 0.07
CMTM1-216ENST00000533078 CNGB1Q14028 1251 aaPredicted RBP15.48■□□□□ 0.07
CMTM1-216ENST00000533078 RTF1Q92541 710 aaKnown RBP15.48■□□□□ 0.07
CMTM1-216ENST00000533078 MKRN1Q9UHC7 482 aaKnown RBP15.48■□□□□ 0.07
CMTM1-216ENST00000533078 DDNO94850 711 aaPredicted RBP15.47■□□□□ 0.07
CMTM1-216ENST00000533078 CAMTA2O94983 1202 aa15.47■□□□□ 0.07
CMTM1-216ENST00000533078 SRGNP10124 158 aa15.47■□□□□ 0.07
CMTM1-216ENST00000533078 CACNA1SQ13698 1873 aa15.47■□□□□ 0.07
CMTM1-216ENST00000533078 CCDC93Q567U6 631 aa15.47■□□□□ 0.07
CMTM1-216ENST00000533078 LDHDQ86WU2 507 aa15.47■□□□□ 0.07
CMTM1-216ENST00000533078 AIDAQ96BJ3 306 aa15.47■□□□□ 0.07
CMTM1-216ENST00000533078 CLEC4GQ6UXB4 293 aa15.46■□□□□ 0.07
CMTM1-216ENST00000533078 NUDCQ9Y266 331 aa15.46■□□□□ 0.07
CMTM1-216ENST00000533078 SIPA1L3O60292 1781 aaPredicted RBP15.46■□□□□ 0.07
CMTM1-216ENST00000533078 ARFGEF2Q9Y6D5 1785 aa15.45■□□□□ 0.06
CMTM1-216ENST00000533078 PER1O15534 1290 aaPredicted RBP15.45■□□□□ 0.06
CMTM1-216ENST00000533078 NPR1P16066 1061 aa15.45■□□□□ 0.06
CMTM1-216ENST00000533078 TPTE2Q6XPS3 522 aa15.45■□□□□ 0.06
CMTM1-216ENST00000533078 NPC1L1Q9UHC9 1359 aa15.45■□□□□ 0.06
CMTM1-216ENST00000533078 SLX4Q8IY92 1834 aa15.45■□□□□ 0.06
CMTM1-216ENST00000533078 SNRPA1P09661 255 aaKnown RBP15.44■□□□□ 0.06
CMTM1-216ENST00000533078 GTF2E1P29083 439 aaPredicted RBP15.44■□□□□ 0.06
CMTM1-216ENST00000533078 SCN4AP35499 1836 aa15.44■□□□□ 0.06
CMTM1-216ENST00000533078 CEMIPQ8WUJ3 1361 aa15.44■□□□□ 0.06
CMTM1-216ENST00000533078 BCORQ6W2J9 1755 aa15.44■□□□□ 0.06
CMTM1-216ENST00000533078 PRKAR2BP31323 418 aa15.43■□□□□ 0.06
CMTM1-216ENST00000533078 FKBP4Q02790 459 aaKnown RBP eCLIP15.43■□□□□ 0.06
CMTM1-216ENST00000533078 EAPPQ56P03 285 aaPredicted RBP15.43■□□□□ 0.06
CMTM1-216ENST00000533078 RTKN2Q8IZC4 609 aa15.43■□□□□ 0.06
CMTM1-216ENST00000533078 L3MBTL3Q96JM7 780 aaPredicted RBP15.43■□□□□ 0.06
CMTM1-216ENST00000533078 CLEC11AQ9Y240 323 aa15.43■□□□□ 0.06
CMTM1-216ENST00000533078 COL3A1P02461 1466 aaPredicted RBP15.43■□□□□ 0.06
CMTM1-216ENST00000533078 CNTNAP1P78357 1384 aa15.42■□□□□ 0.06
CMTM1-216ENST00000533078 TMEM88BA6NKF7 163 aa15.42■□□□□ 0.06
CMTM1-216ENST00000533078 ALDH1B1P30837 517 aa15.42■□□□□ 0.06
CMTM1-216ENST00000533078 TAF1DQ9H5J8 278 aaPredicted RBP15.42■□□□□ 0.06
CMTM1-216ENST00000533078 HACL1Q9UJ83 578 aa15.42■□□□□ 0.06
CMTM1-216ENST00000533078 NIP7Q9Y221 180 aaKnown RBP eCLIP15.42■□□□□ 0.06
CMTM1-216ENST00000533078 RGL2O15211 777 aa15.41■□□□□ 0.06
CMTM1-216ENST00000533078 POTEIP0CG38 1075 aa15.41■□□□□ 0.06
CMTM1-216ENST00000533078 POTEJP0CG39 1038 aa15.41■□□□□ 0.06
CMTM1-216ENST00000533078 PNMA8AQ86V59 439 aaPredicted RBP15.41■□□□□ 0.06
CMTM1-216ENST00000533078 USP16Q9Y5T5 823 aa15.41■□□□□ 0.06
CMTM1-216ENST00000533078 NEFMP07197 916 aa15.4■□□□□ 0.06
CMTM1-216ENST00000533078 PIP4K2AP48426 406 aaPredicted RBP15.4■□□□□ 0.06
CMTM1-216ENST00000533078 CTCFP49711 727 aaPredicted RBP15.4■□□□□ 0.06
CMTM1-216ENST00000533078 PRDM10Q9NQV6 1147 aa15.4■□□□□ 0.06
CMTM1-216ENST00000533078 ZNF277Q9NRM2 450 aaPredicted RBP15.4■□□□□ 0.06
CMTM1-216ENST00000533078 FAM177BA6PVY3 158 aa15.39■□□□□ 0.05
CMTM1-216ENST00000533078 KCNQ3O43525 872 aa15.39■□□□□ 0.05
CMTM1-216ENST00000533078 U2AF1L5P0DN76 240 aaPredicted RBP15.39■□□□□ 0.05
CMTM1-216ENST00000533078 EPHX2P34913 555 aa15.39■□□□□ 0.05
CMTM1-216ENST00000533078 U2AF1Q01081 240 aaKnown RBP eCLIP15.39■□□□□ 0.05
CMTM1-216ENST00000533078 JDP2Q8WYK2 163 aa15.39■□□□□ 0.05
CMTM1-216ENST00000533078 NYXQ9GZU5 481 aa15.39■□□□□ 0.05
CMTM1-216ENST00000533078 RSPH6AQ9H0K4 717 aa15.39■□□□□ 0.05
CMTM1-216ENST00000533078 PASKQ96RG2 1323 aa15.39■□□□□ 0.05
CMTM1-216ENST00000533078 C7orf43Q8WVR3 580 aa15.38■□□□□ 0.05
CMTM1-216ENST00000533078 PHACTR3Q96KR7 559 aa15.38■□□□□ 0.05
CMTM1-216ENST00000533078 KLRG2A4D1S0 409 aaPredicted RBP15.37■□□□□ 0.05
CMTM1-216ENST00000533078 FOXN1O15353 648 aa15.37■□□□□ 0.05
CMTM1-216ENST00000533078 HTATSF1O43719 755 aaKnown RBP15.37■□□□□ 0.05
CMTM1-216ENST00000533078 LMOD1P29536 600 aaPredicted RBP15.37■□□□□ 0.05
CMTM1-216ENST00000533078 IARSP41252 1262 aaKnown RBP15.37■□□□□ 0.05
CMTM1-216ENST00000533078 MCM10Q7L590 875 aa15.37■□□□□ 0.05
CMTM1-216ENST00000533078 ZNF541Q9H0D2 1346 aa15.37■□□□□ 0.05
CMTM1-216ENST00000533078 VEGFBP49765 207 aa15.36■□□□□ 0.05
CMTM1-216ENST00000533078 EIF6P56537 245 aaKnown RBP15.36■□□□□ 0.05
CMTM1-216ENST00000533078 GRIPAP1Q4V328 841 aa15.36■□□□□ 0.05
CMTM1-216ENST00000533078 CC2D2BQ6DHV5 1058 aa15.36■□□□□ 0.05
CMTM1-216ENST00000533078 GPC2Q8N158 579 aa15.36■□□□□ 0.05
CMTM1-216ENST00000533078 SYNE4Q8N205 404 aa15.36■□□□□ 0.05
CMTM1-216ENST00000533078 TMX4Q9H1E5 349 aaPredicted RBP15.36■□□□□ 0.05
CMTM1-216ENST00000533078 PRAMEF22A3QJZ6 481 aa15.35■□□□□ 0.05
CMTM1-216ENST00000533078 MAP2K1Q02750 393 aaPredicted RBP15.35■□□□□ 0.05
CMTM1-216ENST00000533078 KIF6Q6ZMV9 814 aa15.35■□□□□ 0.05
CMTM1-216ENST00000533078 CNTROBQ8N137 903 aa15.35■□□□□ 0.05
CMTM1-216ENST00000533078 RPGRQ92834 1020 aaKnown RBP15.35■□□□□ 0.05
CMTM1-216ENST00000533078 ABT1Q9ULW3 272 aaKnown RBP15.35■□□□□ 0.05
CMTM1-216ENST00000533078 RNF123Q5XPI4 1314 aa15.35■□□□□ 0.05
CMTM1-216ENST00000533078 ITGBL1O95965 494 aaPredicted RBP15.34■□□□□ 0.05
CMTM1-216ENST00000533078 TAF7Q15545 349 aaPredicted RBP15.34■□□□□ 0.05
CMTM1-216ENST00000533078 DEFB115Q30KQ5 88 aa15.34■□□□□ 0.05
CMTM1-216ENST00000533078 PNISRQ8TF01 805 aaKnown RBP15.34■□□□□ 0.05
CMTM1-216ENST00000533078 PSMD1Q99460 953 aa15.34■□□□□ 0.05
CMTM1-216ENST00000533078 FZD9O00144 591 aa15.33■□□□□ 0.04
CMTM1-216ENST00000533078 MAP1SQ66K74 1059 aaPredicted RBP15.33■□□□□ 0.04
CMTM1-216ENST00000533078 BEGAINQ9BUH8 593 aa15.33■□□□□ 0.04
CMTM1-216ENST00000533078 GJA3Q9Y6H8 435 aa15.33■□□□□ 0.04
CMTM1-216ENST00000533078 RASSF10A6NK89 507 aa15.32■□□□□ 0.04
CMTM1-216ENST00000533078 NBPF26B4DH59 902 aa15.32■□□□□ 0.04
CMTM1-216ENST00000533078 ERVV-1B6SEH8 477 aa15.32■□□□□ 0.04
CMTM1-216ENST00000533078 NBPF10Q6P3W6 841 aaKnown RBP15.32■□□□□ 0.04
CMTM1-216ENST00000533078 OLFM4Q6UX06 510 aa15.32■□□□□ 0.04
CMTM1-216ENST00000533078 PAXIP1Q6ZW49 1069 aaPredicted RBP15.32■□□□□ 0.04
CMTM1-216ENST00000533078 NGEFQ8N5V2 710 aa15.32■□□□□ 0.04
CMTM1-216ENST00000533078 NBPF15Q8N660 670 aa15.32■□□□□ 0.04
CMTM1-216ENST00000533078 WBP1LQ9NX94 342 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms