RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 STYK1Q6J9G0 422 aa19.44■□□□□ 0.7
VPS28-215ENST00000531924 NBPF10Q6P3W6 841 aaKnown RBP19.44■□□□□ 0.7
VPS28-215ENST00000531924 NGEFQ8N5V2 710 aa19.44■□□□□ 0.7
VPS28-215ENST00000531924 NBPF15Q8N660 670 aa19.44■□□□□ 0.7
VPS28-215ENST00000531924 MASTLQ96GX5 879 aa19.44■□□□□ 0.7
VPS28-215ENST00000531924 FAM177BA6PVY3 158 aa19.43■□□□□ 0.7
VPS28-215ENST00000531924 NFKBIEO00221 500 aa19.43■□□□□ 0.7
VPS28-215ENST00000531924 FSTL1Q12841 308 aa19.43■□□□□ 0.7
VPS28-215ENST00000531924 SOGA3Q5TF21 947 aa19.43■□□□□ 0.7
VPS28-215ENST00000531924 PLEKHF1Q96S99 279 aa19.43■□□□□ 0.7
VPS28-215ENST00000531924 GLTPD2A6NH11 291 aa19.42■□□□□ 0.7
VPS28-215ENST00000531924 RGL2O15211 777 aa19.42■□□□□ 0.7
VPS28-215ENST00000531924 SRGNP10124 158 aa19.42■□□□□ 0.7
VPS28-215ENST00000531924 DPY19L2Q6NUT2 758 aa19.42■□□□□ 0.7
VPS28-215ENST00000531924 THUMPD2Q9BTF0 503 aaKnown RBP19.42■□□□□ 0.7
VPS28-215ENST00000531924 VEGFAP15692 232 aaPredicted RBP19.41■□□□□ 0.7
VPS28-215ENST00000531924 ERFEQ4G0M1 354 aa19.41■□□□□ 0.7
VPS28-215ENST00000531924 PRPF40BQ6NWY9 871 aaKnown RBP19.41■□□□□ 0.7
VPS28-215ENST00000531924 KIF6Q6ZMV9 814 aa19.41■□□□□ 0.7
VPS28-215ENST00000531924 TAOK3Q9H2K8 898 aa19.41■□□□□ 0.7
VPS28-215ENST00000531924 RRP7AQ9Y3A4 280 aaKnown RBP19.41■□□□□ 0.7
VPS28-215ENST00000531924 DLEC1Q9Y238 1755 aa19.41■□□□□ 0.7
VPS28-215ENST00000531924 SMC1BQ8NDV3 1235 aa19.4■□□□□ 0.7
VPS28-215ENST00000531924 NPR1P16066 1061 aa19.39■□□□□ 0.69
VPS28-215ENST00000531924 PRELPP51888 382 aa19.39■□□□□ 0.69
VPS28-215ENST00000531924 EIF4A1P60842 406 aaKnown RBP19.39■□□□□ 0.69
VPS28-215ENST00000531924 MYL6BP14649 208 aa19.38■□□□□ 0.69
VPS28-215ENST00000531924 RIPK4P57078 832 aa19.38■□□□□ 0.69
VPS28-215ENST00000531924 DDX10Q13206 875 aaKnown RBP19.38■□□□□ 0.69
VPS28-215ENST00000531924 HLFQ16534 295 aa19.38■□□□□ 0.69
VPS28-215ENST00000531924 TSPYL4Q9UJ04 414 aa19.38■□□□□ 0.69
VPS28-215ENST00000531924 LMOD3Q0VAK6 560 aa19.37■□□□□ 0.69
VPS28-215ENST00000531924 NYXQ9GZU5 481 aa19.37■□□□□ 0.69
VPS28-215ENST00000531924 SBF1O95248 1867 aa19.37■□□□□ 0.69
VPS28-215ENST00000531924 ANKRD31Q8N7Z5 1873 aa19.37■□□□□ 0.69
VPS28-215ENST00000531924 BCORQ6W2J9 1755 aa19.37■□□□□ 0.69
VPS28-215ENST00000531924 LTBP3Q9NS15 1303 aa19.36■□□□□ 0.69
VPS28-215ENST00000531924 ERVV-1B6SEH8 477 aa19.36■□□□□ 0.69
VPS28-215ENST00000531924 CCDC93Q567U6 631 aa19.36■□□□□ 0.69
VPS28-215ENST00000531924 MAP3K15Q6ZN16 1313 aa19.35■□□□□ 0.69
VPS28-215ENST00000531924 TNRC6CQ9HCJ0 1690 aaKnown RBP19.35■□□□□ 0.69
VPS28-215ENST00000531924 ALDH1B1P30837 517 aa19.34■□□□□ 0.69
VPS28-215ENST00000531924 ZBTB3Q9H5J0 574 aa19.34■□□□□ 0.69
VPS28-215ENST00000531924 COL11A2P13942 1736 aaPredicted RBP19.34■□□□□ 0.69
VPS28-215ENST00000531924 MYBBP1AQ9BQG0 1328 aaKnown RBP19.33■□□□□ 0.69
VPS28-215ENST00000531924 EIF2S2P20042 333 aaKnown RBP19.33■□□□□ 0.68
VPS28-215ENST00000531924 WDR43Q15061 677 aaKnown RBP eCLIP19.33■□□□□ 0.68
VPS28-215ENST00000531924 TTLL7Q6ZT98 887 aa19.33■□□□□ 0.68
VPS28-215ENST00000531924 ERBB4Q15303 1308 aa19.32■□□□□ 0.68
VPS28-215ENST00000531924 KLRG2A4D1S0 409 aaPredicted RBP19.32■□□□□ 0.68
VPS28-215ENST00000531924 GPTP24298 496 aa19.32■□□□□ 0.68
VPS28-215ENST00000531924 TMPOP42166 694 aaKnown RBP19.32■□□□□ 0.68
VPS28-215ENST00000531924 NEUROD2Q15784 382 aa19.32■□□□□ 0.68
VPS28-215ENST00000531924 RTKN2Q8IZC4 609 aa19.32■□□□□ 0.68
VPS28-215ENST00000531924 DNAJC5GQ8N7S2 189 aa19.32■□□□□ 0.68
VPS28-215ENST00000531924 HTRA3P83110 453 aa19.31■□□□□ 0.68
VPS28-215ENST00000531924 NUTM1Q86Y26 1132 aa19.31■□□□□ 0.68
VPS28-215ENST00000531924 RPGRQ92834 1020 aaKnown RBP19.31■□□□□ 0.68
VPS28-215ENST00000531924 BABAM1Q9NWV8 329 aa19.31■□□□□ 0.68
VPS28-215ENST00000531924 LAMB4A4D0S4 1761 aa19.3■□□□□ 0.68
VPS28-215ENST00000531924 DLG5Q8TDM6 1919 aa19.3■□□□□ 0.68
VPS28-215ENST00000531924 FKBP4Q02790 459 aaKnown RBP eCLIP19.3■□□□□ 0.68
VPS28-215ENST00000531924 CCDC146Q8IYE0 955 aa19.3■□□□□ 0.68
VPS28-215ENST00000531924 C7orf43Q8WVR3 580 aa19.3■□□□□ 0.68
VPS28-215ENST00000531924 TIAM2Q8IVF5 1701 aa19.3■□□□□ 0.68
VPS28-215ENST00000531924 KDM3BQ7LBC6 1761 aa19.29■□□□□ 0.68
VPS28-215ENST00000531924 SLX4Q8IY92 1834 aa19.29■□□□□ 0.68
VPS28-215ENST00000531924 DDNO94850 711 aaPredicted RBP19.28■□□□□ 0.68
VPS28-215ENST00000531924 PPP1R42Q7Z4L9 355 aa19.28■□□□□ 0.68
VPS28-215ENST00000531924 KLRG1Q96E93 195 aa19.28■□□□□ 0.68
VPS28-215ENST00000531924 ZNF277Q9NRM2 450 aaPredicted RBP19.28■□□□□ 0.68
VPS28-215ENST00000531924 LAS1LQ9Y4W2 734 aaKnown RBP19.28■□□□□ 0.68
VPS28-215ENST00000531924 IQCA1LA6NCM1 817 aa19.27■□□□□ 0.68
VPS28-215ENST00000531924 GIGYF2Q6Y7W6 1299 aaKnown RBP19.27■□□□□ 0.68
VPS28-215ENST00000531924 RUNDC1Q96C34 613 aa19.27■□□□□ 0.68
VPS28-215ENST00000531924 TMX4Q9H1E5 349 aaPredicted RBP19.27■□□□□ 0.68
VPS28-215ENST00000531924 POTECB2RU33 542 aa19.26■□□□□ 0.67
VPS28-215ENST00000531924 PARP10Q53GL7 1025 aa19.26■□□□□ 0.67
VPS28-215ENST00000531924 IFFO2Q5TF58 517 aa19.26■□□□□ 0.67
VPS28-215ENST00000531924 SUSD4Q5VX71 490 aa19.26■□□□□ 0.67
VPS28-215ENST00000531924 CC2D2BQ6DHV5 1058 aa19.26■□□□□ 0.67
VPS28-215ENST00000531924 OLFM4Q6UX06 510 aa19.26■□□□□ 0.67
VPS28-215ENST00000531924 NECTIN2Q92692 538 aa19.26■□□□□ 0.67
VPS28-215ENST00000531924 ABCC12Q96J65 1359 aa19.26■□□□□ 0.67
VPS28-215ENST00000531924 FER1L6Q2WGJ9 1857 aa19.26■□□□□ 0.67
VPS28-215ENST00000531924 CCDC88AQ3V6T2 1871 aa19.26■□□□□ 0.67
VPS28-215ENST00000531924 UBN2Q6ZU65 1347 aa19.25■□□□□ 0.67
VPS28-215ENST00000531924 IBTKQ9P2D0 1353 aaPredicted RBP19.25■□□□□ 0.67
VPS28-215ENST00000531924 CRY2Q49AN0 593 aa19.25■□□□□ 0.67
VPS28-215ENST00000531924 ZNF34Q8IZ26 560 aa19.25■□□□□ 0.67
VPS28-215ENST00000531924 SYNE4Q8N205 404 aa19.25■□□□□ 0.67
VPS28-215ENST00000531924 RBM17Q96I25 401 aaKnown RBP19.25■□□□□ 0.67
VPS28-215ENST00000531924 WDR90Q96KV7 1748 aa19.25■□□□□ 0.67
VPS28-215ENST00000531924 IARSP41252 1262 aaKnown RBP19.24■□□□□ 0.67
VPS28-215ENST00000531924 AIMP1Q12904 312 aaKnown RBP19.24■□□□□ 0.67
VPS28-215ENST00000531924 CHADLQ6NUI6 762 aa19.24■□□□□ 0.67
VPS28-215ENST00000531924 JDP2Q8WYK2 163 aa19.24■□□□□ 0.67
VPS28-215ENST00000531924 NLRP3Q96P20 1036 aa19.24■□□□□ 0.67
VPS28-215ENST00000531924 UTP14AQ9BVJ6 771 aaKnown RBP19.24■□□□□ 0.67
VPS28-215ENST00000531924 CACNA1SQ13698 1873 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms