RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 PHLDB3Q6NSJ2 640 aa8.98□□□□□ -0.97
CD44-231ENST00000531110 VWA5B2Q8N398 1253 aa8.98□□□□□ -0.97
CD44-231ENST00000531110 TRERF1Q96PN7 1200 aa8.98□□□□□ -0.97
CD44-231ENST00000531110 TRAIPQ9BWF2 469 aa8.98□□□□□ -0.97
CD44-231ENST00000531110 NDFIP2Q9NV92 336 aa8.98□□□□□ -0.97
CD44-231ENST00000531110 PCDHGC4Q9Y5F7 938 aa8.98□□□□□ -0.97
CD44-231ENST00000531110 CDC14CA4D256 554 aa8.97□□□□□ -0.97
CD44-231ENST00000531110 BRD1O95696 1058 aa8.97□□□□□ -0.97
CD44-231ENST00000531110 VEGFBP49765 207 aa8.97□□□□□ -0.97
CD44-231ENST00000531110 LAMC2Q13753 1193 aa8.97□□□□□ -0.97
CD44-231ENST00000531110 C16orf46Q6P387 395 aa8.97□□□□□ -0.97
CD44-231ENST00000531110 ATXN7L1Q9ULK2 861 aaPredicted RBP8.97□□□□□ -0.97
CD44-231ENST00000531110 TGFBR3LH3BV60 316 aa8.96□□□□□ -0.98
CD44-231ENST00000531110 C11orf91Q3C1V1 193 aa8.96□□□□□ -0.98
CD44-231ENST00000531110 ZCCHC2Q9C0B9 1178 aaKnown RBP8.96□□□□□ -0.98
CD44-231ENST00000531110 NEUROD4Q9HD90 331 aa8.96□□□□□ -0.98
CD44-231ENST00000531110 GJA3Q9Y6H8 435 aa8.96□□□□□ -0.98
CD44-231ENST00000531110 ERBB4Q15303 1308 aa8.96□□□□□ -0.98
CD44-231ENST00000531110 GTPBP3Q969Y2 492 aaKnown RBP8.95□□□□□ -0.98
CD44-231ENST00000531110 NGLY1Q96IV0 654 aa8.95□□□□□ -0.98
CD44-231ENST00000531110 SUSD3Q96L08 255 aa8.95□□□□□ -0.98
CD44-231ENST00000531110 ATXN7O15265 892 aaPredicted RBP8.94□□□□□ -0.98
CD44-231ENST00000531110 EFSO43281 561 aa8.94□□□□□ -0.98
CD44-231ENST00000531110 COX20Q5RI15 118 aa8.94□□□□□ -0.98
CD44-231ENST00000531110 FAM182BQ5T319 152 aa8.94□□□□□ -0.98
CD44-231ENST00000531110 ARID4AP29374 1257 aaPredicted RBP8.93□□□□□ -0.98
CD44-231ENST00000531110 LRRC69Q6ZNQ3 347 aa8.93□□□□□ -0.98
CD44-231ENST00000531110 C11orf16Q9NQ32 467 aa8.93□□□□□ -0.98
CD44-231ENST00000531110 CARNS1A5YM72 827 aa8.92□□□□□ -0.98
CD44-231ENST00000531110 PATL2C9JE40 543 aaKnown RBP8.92□□□□□ -0.98
CD44-231ENST00000531110 WIPF1O43516 503 aa8.92□□□□□ -0.98
CD44-231ENST00000531110 KCNQ4P56696 695 aa8.92□□□□□ -0.98
CD44-231ENST00000531110 TNP2Q05952 138 aa8.92□□□□□ -0.98
CD44-231ENST00000531110 DGKZQ13574 1117 aa8.92□□□□□ -0.98
CD44-231ENST00000531110 LCE2CQ5TA81 110 aa8.92□□□□□ -0.98
CD44-231ENST00000531110 GPR161Q8N6U8 529 aaKnown RBP8.92□□□□□ -0.98
CD44-231ENST00000531110 HELQQ8TDG4 1101 aa8.92□□□□□ -0.98
CD44-231ENST00000531110 MKNK1Q9BUB5 465 aa8.92□□□□□ -0.98
CD44-231ENST00000531110 EGFL7Q9UHF1 273 aa8.92□□□□□ -0.98
CD44-231ENST00000531110 DMGDHQ9UI17 866 aaKnown RBP8.92□□□□□ -0.98
CD44-231ENST00000531110 LRFN2Q9ULH4 789 aa8.92□□□□□ -0.98
CD44-231ENST00000531110 BNIP3LO60238 219 aa8.91□□□□□ -0.98
CD44-231ENST00000531110 BRD2P25440 801 aaKnown RBP8.91□□□□□ -0.98
CD44-231ENST00000531110 TYRO3Q06418 890 aa8.91□□□□□ -0.98
CD44-231ENST00000531110 GAS6Q14393 721 aa8.91□□□□□ -0.98
CD44-231ENST00000531110 BTLAQ7Z6A9 289 aa8.91□□□□□ -0.98
CD44-231ENST00000531110 MBIPQ9NS73 344 aa8.91□□□□□ -0.98
CD44-231ENST00000531110 GNEQ9Y223 722 aaKnown RBP8.91□□□□□ -0.98
CD44-231ENST00000531110 BCS1LQ9Y276 419 aa8.91□□□□□ -0.98
CD44-231ENST00000531110 SF3B2Q13435 895 aaKnown RBP8.9□□□□□ -0.98
CD44-231ENST00000531110 CAPN12Q6ZSI9 719 aa8.9□□□□□ -0.98
CD44-231ENST00000531110 TXNDC2Q86VQ3 553 aa8.9□□□□□ -0.98
CD44-231ENST00000531110 ABTB2Q8N961 1025 aa8.9□□□□□ -0.98
CD44-231ENST00000531110 ZNF280CQ8ND82 737 aa8.9□□□□□ -0.98
CD44-231ENST00000531110 HSH2DQ96JZ2 352 aa8.9□□□□□ -0.98
CD44-231ENST00000531110 COL25A1Q9BXS0 654 aaPredicted RBP8.9□□□□□ -0.98
CD44-231ENST00000531110 STIM2Q9P246 746 aa8.9□□□□□ -0.98
CD44-231ENST00000531110 NSFL1CQ9UNZ2 370 aaKnown RBP8.9□□□□□ -0.98
CD44-231ENST00000531110 TNFRSF10BO14763 440 aa8.89□□□□□ -0.99
CD44-231ENST00000531110 MAPTP10636 758 aaKnown RBP8.89□□□□□ -0.99
CD44-231ENST00000531110 NPR3P17342 541 aa8.89□□□□□ -0.99
CD44-231ENST00000531110 FGFR3P22607 806 aa8.89□□□□□ -0.99
CD44-231ENST00000531110 GMPRP36959 345 aa8.89□□□□□ -0.99
CD44-231ENST00000531110 KCNA1Q09470 495 aa8.89□□□□□ -0.99
CD44-231ENST00000531110 IFT43Q96FT9 208 aa8.89□□□□□ -0.99
CD44-231ENST00000531110 SAP130Q9H0E3 1048 aa8.89□□□□□ -0.99
CD44-231ENST00000531110 EFCC1Q9HA90 598 aa8.89□□□□□ -0.99
CD44-231ENST00000531110 KLK14Q9P0G3 267 aa8.89□□□□□ -0.99
CD44-231ENST00000531110 SEPT3Q9UH03 358 aa8.89□□□□□ -0.99
CD44-231ENST00000531110 PDIA4P13667 645 aaKnown RBP8.88□□□□□ -0.99
CD44-231ENST00000531110 EPB42P16452 691 aa8.88□□□□□ -0.99
CD44-231ENST00000531110 SRSF11Q05519 484 aaKnown RBP8.88□□□□□ -0.99
CD44-231ENST00000531110 CCER1Q8TC90 406 aaPredicted RBP8.88□□□□□ -0.99
CD44-231ENST00000531110 GTF3C2Q8WUA4 911 aaPredicted RBP8.88□□□□□ -0.99
CD44-231ENST00000531110 KLRG1Q96E93 195 aa8.88□□□□□ -0.99
CD44-231ENST00000531110 ABHD17AQ96GS6 310 aa8.88□□□□□ -0.99
CD44-231ENST00000531110 AVENQ9NQS1 362 aaPredicted RBP8.88□□□□□ -0.99
CD44-231ENST00000531110 GPR25O00155 361 aa8.87□□□□□ -0.99
CD44-231ENST00000531110 MX2P20592 715 aa8.87□□□□□ -0.99
CD44-231ENST00000531110 INPP5BP32019 993 aa8.87□□□□□ -0.99
CD44-231ENST00000531110 MAP2K3P46734 347 aa8.87□□□□□ -0.99
CD44-231ENST00000531110 NAA30Q147X3 362 aaPredicted RBP8.87□□□□□ -0.99
CD44-231ENST00000531110 CEP63Q96MT8 703 aa8.87□□□□□ -0.99
CD44-231ENST00000531110 BRD7Q9NPI1 651 aa8.87□□□□□ -0.99
CD44-231ENST00000531110 FAM13BQ9NYF5 915 aa8.87□□□□□ -0.99
CD44-231ENST00000531110 MARK1Q9P0L2 795 aa8.87□□□□□ -0.99
CD44-231ENST00000531110 DCDC2BA2VCK2 349 aa8.86□□□□□ -0.99
CD44-231ENST00000531110 KHNYNO15037 678 aaKnown RBP8.86□□□□□ -0.99
CD44-231ENST00000531110 MICAL2O94851 1124 aa8.86□□□□□ -0.99
CD44-231ENST00000531110 SLURP2P0DP57 97 aa8.86□□□□□ -0.99
CD44-231ENST00000531110 ARSDP51689 593 aa8.86□□□□□ -0.99
CD44-231ENST00000531110 KRT76Q01546 638 aa8.86□□□□□ -0.99
CD44-231ENST00000531110 RNFT1Q5M7Z0 435 aa8.86□□□□□ -0.99
CD44-231ENST00000531110 IDH3AP50213 366 aa8.85□□□□□ -0.99
CD44-231ENST00000531110 ETFBKMTQ8IXQ9 262 aa8.85□□□□□ -0.99
CD44-231ENST00000531110 LRRC4BQ9NT99 713 aa8.85□□□□□ -0.99
CD44-231ENST00000531110 KCNH4Q9UQ05 1017 aa8.85□□□□□ -0.99
CD44-231ENST00000531110 DNMT3AQ9Y6K1 912 aaPredicted RBP8.85□□□□□ -0.99
CD44-231ENST00000531110 FAM13AO94988 1023 aa8.84□□□□□ -0.99
CD44-231ENST00000531110 FKBP4Q02790 459 aaKnown RBP eCLIP8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms