RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 CWF19L2Q2TBE0 894 aaKnown RBP13.35□□□□□ -0.27
HDAC9-228ENST00000524023 FOXD4L6Q3SYB3 417 aaPredicted RBP13.35□□□□□ -0.27
HDAC9-228ENST00000524023 FOXD4L3Q6VB84 417 aaPredicted RBP13.35□□□□□ -0.27
HDAC9-228ENST00000524023 RUFY3Q7L099 469 aa13.35□□□□□ -0.27
HDAC9-228ENST00000524023 USP48Q86UV5 1035 aa13.35□□□□□ -0.27
HDAC9-228ENST00000524023 ERC1Q8IUD2 1116 aa13.35□□□□□ -0.27
HDAC9-228ENST00000524023 RUFY2Q8WXA3 655 aa13.35□□□□□ -0.27
HDAC9-228ENST00000524023 DIAPH3Q9NSV4 1193 aa13.35□□□□□ -0.27
HDAC9-228ENST00000524023 LIMCH1Q9UPQ0 1083 aa13.35□□□□□ -0.27
HDAC9-228ENST00000524023 PA2G4Q9UQ80 394 aaKnown RBP13.35□□□□□ -0.27
HDAC9-228ENST00000524023 HDAC5Q9UQL6 1122 aa13.35□□□□□ -0.27
HDAC9-228ENST00000524023 ZNF142P52746 1687 aaPredicted RBP13.35□□□□□ -0.27
HDAC9-228ENST00000524023 CAMTA1Q9Y6Y1 1673 aa13.35□□□□□ -0.27
HDAC9-228ENST00000524023 GADD45BO75293 160 aaPredicted RBP13.35□□□□□ -0.27
HDAC9-228ENST00000524023 MSNP26038 577 aaKnown RBP13.35□□□□□ -0.27
HDAC9-228ENST00000524023 SYAP1Q96A49 352 aaPredicted RBP13.35□□□□□ -0.27
HDAC9-228ENST00000524023 ORAI2Q96SN7 254 aa13.35□□□□□ -0.27
HDAC9-228ENST00000524023 GDPD2Q9HCC8 539 aa13.35□□□□□ -0.27
HDAC9-228ENST00000524023 IFIT2P09913 472 aaKnown RBP13.34□□□□□ -0.27
HDAC9-228ENST00000524023 GPATCH3Q96I76 525 aa13.34□□□□□ -0.27
HDAC9-228ENST00000524023 HYPKQ9NX55 129 aa13.34□□□□□ -0.27
HDAC9-228ENST00000524023 CASTP20810 708 aaKnown RBP13.34□□□□□ -0.27
HDAC9-228ENST00000524023 XPCQ01831 940 aaPredicted RBP13.34□□□□□ -0.27
HDAC9-228ENST00000524023 PTH1RQ03431 593 aa13.34□□□□□ -0.27
HDAC9-228ENST00000524023 TMEM87AQ8NBN3 555 aa13.34□□□□□ -0.27
HDAC9-228ENST00000524023 LINS1Q8NG48 757 aa13.34□□□□□ -0.27
HDAC9-228ENST00000524023 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.34□□□□□ -0.27
HDAC9-228ENST00000524023 ZSCAN22P10073 491 aaPredicted RBP13.33□□□□□ -0.28
HDAC9-228ENST00000524023 CPA1P15085 419 aa13.33□□□□□ -0.28
HDAC9-228ENST00000524023 LARP6Q9BRS8 491 aaKnown RBP13.33□□□□□ -0.28
HDAC9-228ENST00000524023 TSPY26PQ9H489 355 aa13.33□□□□□ -0.28
HDAC9-228ENST00000524023 NOL7Q9UMY1 257 aaKnown RBP13.33□□□□□ -0.28
HDAC9-228ENST00000524023 AXIN2Q9Y2T1 843 aa13.33□□□□□ -0.28
HDAC9-228ENST00000524023 UTYO14607 1347 aa13.33□□□□□ -0.28
HDAC9-228ENST00000524023 ADAMTS7Q9UKP4 1686 aa13.33□□□□□ -0.28
HDAC9-228ENST00000524023 GRM8O00222 908 aa13.32□□□□□ -0.28
HDAC9-228ENST00000524023 SYT1P21579 422 aa13.32□□□□□ -0.28
HDAC9-228ENST00000524023 KCNB2Q92953 911 aa13.32□□□□□ -0.28
HDAC9-228ENST00000524023 EVI5LQ96CN4 794 aa13.32□□□□□ -0.28
HDAC9-228ENST00000524023 KAZALD1Q96I82 304 aa13.32□□□□□ -0.28
HDAC9-228ENST00000524023 SUCLG2Q96I99 432 aa13.32□□□□□ -0.28
HDAC9-228ENST00000524023 DDX21Q9NR30 783 aaKnown RBP eCLIP13.32□□□□□ -0.28
HDAC9-228ENST00000524023 LMTK3Q96Q04 1460 aa13.32□□□□□ -0.28
HDAC9-228ENST00000524023 STX6O43752 255 aa13.32□□□□□ -0.28
HDAC9-228ENST00000524023 DDX58O95786 925 aaKnown RBP13.32□□□□□ -0.28
HDAC9-228ENST00000524023 PRPF40BQ6NWY9 871 aaKnown RBP13.32□□□□□ -0.28
HDAC9-228ENST00000524023 LMOD2Q6P5Q4 547 aa13.32□□□□□ -0.28
HDAC9-228ENST00000524023 AACSQ86V21 672 aa13.32□□□□□ -0.28
HDAC9-228ENST00000524023 TM6SF1Q9BZW5 370 aa13.32□□□□□ -0.28
HDAC9-228ENST00000524023 SMC3Q9UQE7 1217 aa13.32□□□□□ -0.28
HDAC9-228ENST00000524023 TRPM3Q9HCF6 1732 aaPredicted RBP13.31□□□□□ -0.28
HDAC9-228ENST00000524023 RGPD5Q99666 1765 aa13.31□□□□□ -0.28
HDAC9-228ENST00000524023 PHF14O94880 888 aa13.31□□□□□ -0.28
HDAC9-228ENST00000524023 SASH1O94885 1247 aa13.31□□□□□ -0.28
HDAC9-228ENST00000524023 LARGE1O95461 756 aa13.31□□□□□ -0.28
HDAC9-228ENST00000524023 ADCK5Q3MIX3 580 aa13.31□□□□□ -0.28
HDAC9-228ENST00000524023 VPS53Q5VIR6 699 aa13.31□□□□□ -0.28
HDAC9-228ENST00000524023 RNF214Q8ND24 703 aa13.31□□□□□ -0.28
HDAC9-228ENST00000524023 BICC1Q9H694 974 aaKnown RBP13.31□□□□□ -0.28
HDAC9-228ENST00000524023 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.31□□□□□ -0.28
HDAC9-228ENST00000524023 OFD1O75665 1012 aa13.31□□□□□ -0.28
HDAC9-228ENST00000524023 PDIA6Q15084 440 aa13.31□□□□□ -0.28
HDAC9-228ENST00000524023 JAKMIP1Q96N16 626 aaKnown RBP13.31□□□□□ -0.28
HDAC9-228ENST00000524023 ZSWIM6Q9HCJ5 1215 aa13.31□□□□□ -0.28
HDAC9-228ENST00000524023 PDRG1Q9NUG6 133 aa13.31□□□□□ -0.28
HDAC9-228ENST00000524023 CNPY2Q9Y2B0 182 aa13.31□□□□□ -0.28
HDAC9-228ENST00000524023 CCDC171Q6TFL3 1326 aa13.3□□□□□ -0.28
HDAC9-228ENST00000524023 AIMP1Q12904 312 aaKnown RBP13.3□□□□□ -0.28
HDAC9-228ENST00000524023 G3BP1Q13283 466 aaKnown RBP eCLIP13.3□□□□□ -0.28
HDAC9-228ENST00000524023 NECTIN1Q15223 517 aa13.3□□□□□ -0.28
HDAC9-228ENST00000524023 EAF2Q96CJ1 260 aaPredicted RBP13.3□□□□□ -0.28
HDAC9-228ENST00000524023 CYP46A1Q9Y6A2 500 aa13.3□□□□□ -0.28
HDAC9-228ENST00000524023 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.3□□□□□ -0.28
HDAC9-228ENST00000524023 ZNF500O60304 480 aaPredicted RBP13.3□□□□□ -0.28
HDAC9-228ENST00000524023 F13A1P00488 732 aa13.3□□□□□ -0.28
HDAC9-228ENST00000524023 ZSCAN31Q96LW9 406 aaPredicted RBP13.3□□□□□ -0.28
HDAC9-228ENST00000524023 HIP1O00291 1037 aa13.29□□□□□ -0.28
HDAC9-228ENST00000524023 IGKV5-2P06315 115 aa13.29□□□□□ -0.28
HDAC9-228ENST00000524023 CCDC83Q8IWF9 413 aa13.29□□□□□ -0.28
HDAC9-228ENST00000524023 SH2B1Q9NRF2 756 aaPredicted RBP13.29□□□□□ -0.28
HDAC9-228ENST00000524023 C5P01031 1676 aa13.28□□□□□ -0.28
HDAC9-228ENST00000524023 GJB2P29033 226 aa13.28□□□□□ -0.28
HDAC9-228ENST00000524023 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.28□□□□□ -0.28
HDAC9-228ENST00000524023 KRT28Q7Z3Y7 464 aa13.28□□□□□ -0.28
HDAC9-228ENST00000524023 CCDC8Q9H0W5 538 aaPredicted RBP13.28□□□□□ -0.28
HDAC9-228ENST00000524023 CCDC39Q9UFE4 941 aa13.28□□□□□ -0.28
HDAC9-228ENST00000524023 ZKSCAN5Q9Y2L8 839 aa13.28□□□□□ -0.28
HDAC9-228ENST00000524023 ATP6V1DQ9Y5K8 247 aa13.28□□□□□ -0.28
HDAC9-228ENST00000524023 RBM8AQ9Y5S9 174 aaKnown RBP13.28□□□□□ -0.28
HDAC9-228ENST00000524023 SCN11AQ9UI33 1791 aa13.28□□□□□ -0.28
HDAC9-228ENST00000524023 NPHP4O75161 1426 aaPredicted RBP13.28□□□□□ -0.28
HDAC9-228ENST00000524023 ERBB3P21860 1342 aa13.28□□□□□ -0.28
HDAC9-228ENST00000524023 TPM2P07951 284 aa13.28□□□□□ -0.28
HDAC9-228ENST00000524023 ZKSCAN1P17029 563 aaPredicted RBP13.28□□□□□ -0.28
HDAC9-228ENST00000524023 MCM5P33992 734 aa13.28□□□□□ -0.28
HDAC9-228ENST00000524023 UBE2HP62256 183 aa13.28□□□□□ -0.28
HDAC9-228ENST00000524023 NMIQ13287 307 aaPredicted RBP13.28□□□□□ -0.28
HDAC9-228ENST00000524023 CCDC183Q5T5S1 534 aa13.28□□□□□ -0.28
HDAC9-228ENST00000524023 CREB3L3Q68CJ9 461 aa13.28□□□□□ -0.28
HDAC9-228ENST00000524023 ZNF790Q6PG37 636 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms