RNA–Protein interactions for RNA: ENST00000522987.1

MRPS28-209, Transcript of mitochondrial ribosomal protein S28, humanhuman

TSL 3

Gene MRPS28, Length 487 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPS28-209ENST00000522987 BRIP1Q9BX63 1249 aa20.57■□□□□ 0.88
MRPS28-209ENST00000522987 DNAJC5GQ8N7S2 189 aa20.56■□□□□ 0.88
MRPS28-209ENST00000522987 KDM3BQ7LBC6 1761 aa20.54■□□□□ 0.88
MRPS28-209ENST00000522987 GLTPD2A6NH11 291 aa20.54■□□□□ 0.88
MRPS28-209ENST00000522987 SNRPA1P09661 255 aaKnown RBP20.54■□□□□ 0.88
MRPS28-209ENST00000522987 ST5P78524 1137 aa20.54■□□□□ 0.88
MRPS28-209ENST00000522987 NUP98P52948 1817 aa20.54■□□□□ 0.88
MRPS28-209ENST00000522987 NBPF26B4DH59 902 aa20.53■□□□□ 0.88
MRPS28-209ENST00000522987 NBPF10Q6P3W6 841 aaKnown RBP20.53■□□□□ 0.88
MRPS28-209ENST00000522987 NBPF5PQ86XG9 351 aaPredicted RBP20.53■□□□□ 0.88
MRPS28-209ENST00000522987 NGEFQ8N5V2 710 aa20.53■□□□□ 0.88
MRPS28-209ENST00000522987 NBPF15Q8N660 670 aa20.53■□□□□ 0.88
MRPS28-209ENST00000522987 FSTL1Q12841 308 aa20.52■□□□□ 0.88
MRPS28-209ENST00000522987 THUMPD2Q9BTF0 503 aaKnown RBP20.52■□□□□ 0.88
MRPS28-209ENST00000522987 ERFEQ4G0M1 354 aa20.51■□□□□ 0.87
MRPS28-209ENST00000522987 PRPF40BQ6NWY9 871 aaKnown RBP20.51■□□□□ 0.87
MRPS28-209ENST00000522987 SRGNP10124 158 aa20.5■□□□□ 0.87
MRPS28-209ENST00000522987 VEGFAP15692 232 aaPredicted RBP20.5■□□□□ 0.87
MRPS28-209ENST00000522987 TAF7Q15545 349 aaPredicted RBP20.5■□□□□ 0.87
MRPS28-209ENST00000522987 SMC1BQ8NDV3 1235 aa20.5■□□□□ 0.87
MRPS28-209ENST00000522987 ZC3H4Q9UPT8 1303 aaKnown RBP20.5■□□□□ 0.87
MRPS28-209ENST00000522987 HLFQ16534 295 aa20.49■□□□□ 0.87
MRPS28-209ENST00000522987 CNKSR1Q969H4 720 aa20.49■□□□□ 0.87
MRPS28-209ENST00000522987 NIP7Q9Y221 180 aaKnown RBP eCLIP20.49■□□□□ 0.87
MRPS28-209ENST00000522987 STYK1Q6J9G0 422 aa20.48■□□□□ 0.87
MRPS28-209ENST00000522987 OLFM4Q6UX06 510 aa20.48■□□□□ 0.87
MRPS28-209ENST00000522987 MASTLQ96GX5 879 aa20.48■□□□□ 0.87
MRPS28-209ENST00000522987 TAOK3Q9H2K8 898 aa20.48■□□□□ 0.87
MRPS28-209ENST00000522987 PDZRN3Q9UPQ7 1066 aa20.48■□□□□ 0.87
MRPS28-209ENST00000522987 ZNF652Q9Y2D9 606 aa20.48■□□□□ 0.87
MRPS28-209ENST00000522987 POTECB2RU33 542 aa20.47■□□□□ 0.87
MRPS28-209ENST00000522987 NEFMP07197 916 aa20.47■□□□□ 0.87
MRPS28-209ENST00000522987 KLRG1Q96E93 195 aa20.47■□□□□ 0.87
MRPS28-209ENST00000522987 HTATSF1O43719 755 aaKnown RBP20.46■□□□□ 0.87
MRPS28-209ENST00000522987 DPY19L2Q6NUT2 758 aa20.46■□□□□ 0.87
MRPS28-209ENST00000522987 RRP7AQ9Y3A4 280 aaKnown RBP20.46■□□□□ 0.87
MRPS28-209ENST00000522987 DDNO94850 711 aaPredicted RBP20.45■□□□□ 0.86
MRPS28-209ENST00000522987 CLEC4GQ6UXB4 293 aa20.45■□□□□ 0.86
MRPS28-209ENST00000522987 MYL6BP14649 208 aa20.44■□□□□ 0.86
MRPS28-209ENST00000522987 POTEIP0CG38 1075 aa20.43■□□□□ 0.86
MRPS28-209ENST00000522987 POTEJP0CG39 1038 aa20.43■□□□□ 0.86
MRPS28-209ENST00000522987 GTF2E1P29083 439 aaPredicted RBP20.43■□□□□ 0.86
MRPS28-209ENST00000522987 TPTE2Q6XPS3 522 aa20.43■□□□□ 0.86
MRPS28-209ENST00000522987 TTLL7Q6ZT98 887 aa20.43■□□□□ 0.86
MRPS28-209ENST00000522987 PLEKHF1Q96S99 279 aa20.43■□□□□ 0.86
MRPS28-209ENST00000522987 NPR1P16066 1061 aa20.42■□□□□ 0.86
MRPS28-209ENST00000522987 NFE2L2Q16236 605 aa20.42■□□□□ 0.86
MRPS28-209ENST00000522987 NUTM1Q86Y26 1132 aa20.42■□□□□ 0.86
MRPS28-209ENST00000522987 LTBP3Q9NS15 1303 aa20.42■□□□□ 0.86
MRPS28-209ENST00000522987 GPTP24298 496 aa20.41■□□□□ 0.86
MRPS28-209ENST00000522987 EIF4A1P60842 406 aaKnown RBP20.41■□□□□ 0.86
MRPS28-209ENST00000522987 ZBTB3Q9H5J0 574 aa20.41■□□□□ 0.86
MRPS28-209ENST00000522987 ZNF277Q9NRM2 450 aaPredicted RBP20.41■□□□□ 0.86
MRPS28-209ENST00000522987 MAPK8IP3Q9UPT6 1336 aa20.41■□□□□ 0.86
MRPS28-209ENST00000522987 ABCC12Q96J65 1359 aa20.41■□□□□ 0.86
MRPS28-209ENST00000522987 CCDC93Q567U6 631 aa20.4■□□□□ 0.86
MRPS28-209ENST00000522987 C7orf43Q8WVR3 580 aa20.4■□□□□ 0.86
MRPS28-209ENST00000522987 SOGA3Q5TF21 947 aa20.39■□□□□ 0.85
MRPS28-209ENST00000522987 SLC51AQ86UW1 340 aa20.39■□□□□ 0.85
MRPS28-209ENST00000522987 PNISRQ8TF01 805 aaKnown RBP20.39■□□□□ 0.85
MRPS28-209ENST00000522987 SCN4AP35499 1836 aa20.39■□□□□ 0.85
MRPS28-209ENST00000522987 MAP3K15Q6ZN16 1313 aa20.37■□□□□ 0.85
MRPS28-209ENST00000522987 ZNF541Q9H0D2 1346 aa20.37■□□□□ 0.85
MRPS28-209ENST00000522987 KIF6Q6ZMV9 814 aa20.37■□□□□ 0.85
MRPS28-209ENST00000522987 JMYQ8N9B5 988 aa20.37■□□□□ 0.85
MRPS28-209ENST00000522987 TCERG1O14776 1098 aaKnown RBP20.36■□□□□ 0.85
MRPS28-209ENST00000522987 FKBP4Q02790 459 aaKnown RBP eCLIP20.36■□□□□ 0.85
MRPS28-209ENST00000522987 UBN2Q6ZU65 1347 aa20.35■□□□□ 0.85
MRPS28-209ENST00000522987 KLRG2A4D1S0 409 aaPredicted RBP20.35■□□□□ 0.85
MRPS28-209ENST00000522987 ANXA1P04083 346 aa20.35■□□□□ 0.85
MRPS28-209ENST00000522987 EIF2S2P20042 333 aaKnown RBP20.35■□□□□ 0.85
MRPS28-209ENST00000522987 COL13A1Q5TAT6 717 aaPredicted RBP20.35■□□□□ 0.85
MRPS28-209ENST00000522987 CHADLQ6NUI6 762 aa20.35■□□□□ 0.85
MRPS28-209ENST00000522987 NECTIN2Q92692 538 aa20.35■□□□□ 0.85
MRPS28-209ENST00000522987 TSPYL4Q9UJ04 414 aa20.35■□□□□ 0.85
MRPS28-209ENST00000522987 ANKRD36CQ5JPF3 1778 aa20.34■□□□□ 0.85
MRPS28-209ENST00000522987 SYNE4Q8N205 404 aa20.34■□□□□ 0.85
MRPS28-209ENST00000522987 LAMB2P55268 1798 aa20.34■□□□□ 0.85
MRPS28-209ENST00000522987 TAF1P21675 1872 aa20.33■□□□□ 0.85
MRPS28-209ENST00000522987 RIPK4P57078 832 aa20.33■□□□□ 0.85
MRPS28-209ENST00000522987 EAPPQ56P03 285 aaPredicted RBP20.33■□□□□ 0.85
MRPS28-209ENST00000522987 SUSD4Q5VX71 490 aa20.33■□□□□ 0.85
MRPS28-209ENST00000522987 CCDC146Q8IYE0 955 aa20.33■□□□□ 0.85
MRPS28-209ENST00000522987 NYXQ9GZU5 481 aa20.33■□□□□ 0.85
MRPS28-209ENST00000522987 ERVV-1B6SEH8 477 aa20.32■□□□□ 0.84
MRPS28-209ENST00000522987 ALDH1B1P30837 517 aa20.32■□□□□ 0.84
MRPS28-209ENST00000522987 NEUROD2Q15784 382 aa20.32■□□□□ 0.84
MRPS28-209ENST00000522987 PROSER3Q2NL68 480 aa20.32■□□□□ 0.84
MRPS28-209ENST00000522987 RPGRQ92834 1020 aaKnown RBP20.32■□□□□ 0.84
MRPS28-209ENST00000522987 ZNF428Q96B54 188 aa20.32■□□□□ 0.84
MRPS28-209ENST00000522987 MKRN1Q9UHC7 482 aaKnown RBP20.32■□□□□ 0.84
MRPS28-209ENST00000522987 RGL2O15211 777 aa20.31■□□□□ 0.84
MRPS28-209ENST00000522987 HSPA1AP0DMV8 641 aaKnown RBP20.31■□□□□ 0.84
MRPS28-209ENST00000522987 HSPA1BP0DMV9 641 aaKnown RBP20.31■□□□□ 0.84
MRPS28-209ENST00000522987 IARSP41252 1262 aaKnown RBP20.31■□□□□ 0.84
MRPS28-209ENST00000522987 C3orf67Q6ZVT6 689 aa20.31■□□□□ 0.84
MRPS28-209ENST00000522987 PNNQ9H307 717 aaKnown RBP20.31■□□□□ 0.84
MRPS28-209ENST00000522987 TAF1DQ9H5J8 278 aaPredicted RBP20.31■□□□□ 0.84
MRPS28-209ENST00000522987 COL4A5P29400 1685 aa20.31■□□□□ 0.84
MRPS28-209ENST00000522987 RNF123Q5XPI4 1314 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms