RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 BCAR3O75815 825 aa19.64■□□□□ 0.73
LSM1-203ENST00000520755 MRPL50Q8N5N7 158 aaKnown RBP19.64■□□□□ 0.73
LSM1-203ENST00000520755 NUP98P52948 1817 aa19.64■□□□□ 0.73
LSM1-203ENST00000520755 GYS1P13807 737 aa19.63■□□□□ 0.73
LSM1-203ENST00000520755 TTLL7Q6ZT98 887 aa19.63■□□□□ 0.73
LSM1-203ENST00000520755 STK31Q9BXU1 1019 aa19.63■□□□□ 0.73
LSM1-203ENST00000520755 SMC4Q9NTJ3 1288 aa19.63■□□□□ 0.73
LSM1-203ENST00000520755 AFDNP55196 1824 aaKnown RBP19.62■□□□□ 0.73
LSM1-203ENST00000520755 AIMP1Q12904 312 aaKnown RBP19.62■□□□□ 0.73
LSM1-203ENST00000520755 KIF6Q6ZMV9 814 aa19.62■□□□□ 0.73
LSM1-203ENST00000520755 XAGE3Q8WTP9 111 aa19.62■□□□□ 0.73
LSM1-203ENST00000520755 SPON1Q9HCB6 807 aa19.62■□□□□ 0.73
LSM1-203ENST00000520755 HYPKQ9NX55 129 aa19.62■□□□□ 0.73
LSM1-203ENST00000520755 CAMTA2O94983 1202 aa19.61■□□□□ 0.73
LSM1-203ENST00000520755 BRPF1P55201 1214 aaPredicted RBP19.61■□□□□ 0.73
LSM1-203ENST00000520755 FKBP8Q14318 412 aa19.61■□□□□ 0.73
LSM1-203ENST00000520755 COPS6Q7L5N1 327 aa19.61■□□□□ 0.73
LSM1-203ENST00000520755 G2E3Q7L622 706 aa19.61■□□□□ 0.73
LSM1-203ENST00000520755 PHAXQ9H814 394 aaKnown RBP19.6■□□□□ 0.73
LSM1-203ENST00000520755 BCL2L12Q9HB09 334 aa19.6■□□□□ 0.73
LSM1-203ENST00000520755 LRP5O75197 1615 aa19.59■□□□□ 0.73
LSM1-203ENST00000520755 SLC4A2P04920 1241 aa19.59■□□□□ 0.73
LSM1-203ENST00000520755 NLGN1Q8N2Q7 840 aa19.59■□□□□ 0.73
LSM1-203ENST00000520755 ZBTB3Q9H5J0 574 aa19.59■□□□□ 0.73
LSM1-203ENST00000520755 RNF123Q5XPI4 1314 aa19.58■□□□□ 0.73
LSM1-203ENST00000520755 MAP3K15Q6ZN16 1313 aa19.58■□□□□ 0.73
LSM1-203ENST00000520755 POLD1P28340 1107 aa19.58■□□□□ 0.72
LSM1-203ENST00000520755 PTGER2P43116 358 aa19.57■□□□□ 0.72
LSM1-203ENST00000520755 HLFQ16534 295 aa19.57■□□□□ 0.72
LSM1-203ENST00000520755 BICDL1Q6ZP65 573 aa19.57■□□□□ 0.72
LSM1-203ENST00000520755 ZNF652Q9Y2D9 606 aa19.57■□□□□ 0.72
LSM1-203ENST00000520755 KIF16BQ96L93 1317 aa19.56■□□□□ 0.72
LSM1-203ENST00000520755 ERVV-1B6SEH8 477 aa19.56■□□□□ 0.72
LSM1-203ENST00000520755 MMP10P09238 476 aa19.56■□□□□ 0.72
LSM1-203ENST00000520755 TNNQ9UQP3 1299 aa19.56■□□□□ 0.72
LSM1-203ENST00000520755 FLIIQ13045 1269 aa19.55■□□□□ 0.72
LSM1-203ENST00000520755 TBC1D9BQ66K14 1250 aa19.55■□□□□ 0.72
LSM1-203ENST00000520755 SGIP1Q9BQI5 828 aa19.55■□□□□ 0.72
LSM1-203ENST00000520755 ADCY9O60503 1353 aa19.55■□□□□ 0.72
LSM1-203ENST00000520755 RRP1P56182 461 aaKnown RBP19.54■□□□□ 0.72
LSM1-203ENST00000520755 NFIXQ14938 502 aa19.54■□□□□ 0.72
LSM1-203ENST00000520755 CLEC4GQ6UXB4 293 aa19.54■□□□□ 0.72
LSM1-203ENST00000520755 ANKRD13DQ6ZTN6 518 aa19.54■□□□□ 0.72
LSM1-203ENST00000520755 PPP1R1BQ9UD71 204 aaPredicted RBP19.54■□□□□ 0.72
LSM1-203ENST00000520755 NOB1Q9ULX3 412 aaKnown RBP19.54■□□□□ 0.72
LSM1-203ENST00000520755 SUPT16HQ9Y5B9 1047 aaKnown RBP19.54■□□□□ 0.72
LSM1-203ENST00000520755 PXDNLA1KZ92 1463 aa19.54■□□□□ 0.72
LSM1-203ENST00000520755 PLIN1O60240 522 aa19.53■□□□□ 0.72
LSM1-203ENST00000520755 TM4SF1P30408 202 aa19.53■□□□□ 0.72
LSM1-203ENST00000520755 DDR1Q08345 913 aa19.53■□□□□ 0.72
LSM1-203ENST00000520755 PLBD2Q8NHP8 589 aa19.53■□□□□ 0.72
LSM1-203ENST00000520755 PARP3Q9Y6F1 533 aa19.53■□□□□ 0.72
LSM1-203ENST00000520755 DDX58O95786 925 aaKnown RBP19.52■□□□□ 0.72
LSM1-203ENST00000520755 GIGYF2Q6Y7W6 1299 aaKnown RBP19.52■□□□□ 0.72
LSM1-203ENST00000520755 RIC3Q7Z5B4 369 aa19.52■□□□□ 0.72
LSM1-203ENST00000520755 PTPRCP08575 1304 aa19.51■□□□□ 0.71
LSM1-203ENST00000520755 RGL2O15211 777 aa19.51■□□□□ 0.71
LSM1-203ENST00000520755 TRIM27P14373 513 aa19.51■□□□□ 0.71
LSM1-203ENST00000520755 FKBP5Q13451 457 aaPredicted RBP19.51■□□□□ 0.71
LSM1-203ENST00000520755 FRAT1Q92837 279 aaPredicted RBP19.51■□□□□ 0.71
LSM1-203ENST00000520755 SETDB2Q96T68 719 aa19.51■□□□□ 0.71
LSM1-203ENST00000520755 NIP7Q9Y221 180 aaKnown RBP eCLIP19.51■□□□□ 0.71
LSM1-203ENST00000520755 ATP10DQ9P241 1426 aa19.51■□□□□ 0.71
LSM1-203ENST00000520755 CARMIL3Q8ND23 1372 aa19.5■□□□□ 0.71
LSM1-203ENST00000520755 POLRMTO00411 1230 aaKnown RBP19.5■□□□□ 0.71
LSM1-203ENST00000520755 GPTP24298 496 aa19.5■□□□□ 0.71
LSM1-203ENST00000520755 KLHL34Q8N239 644 aa19.5■□□□□ 0.71
LSM1-203ENST00000520755 NRXN2Q9P2S2 1712 aa19.5■□□□□ 0.71
LSM1-203ENST00000520755 ABCC4O15439 1325 aa19.5■□□□□ 0.71
LSM1-203ENST00000520755 HSP90AB3PQ58FF7 597 aa19.49■□□□□ 0.71
LSM1-203ENST00000520755 ZKSCAN2Q63HK3 967 aa19.49■□□□□ 0.71
LSM1-203ENST00000520755 ATF7IPQ6VMQ6 1270 aa19.49■□□□□ 0.71
LSM1-203ENST00000520755 ARHGAP45Q92619 1136 aa19.49■□□□□ 0.71
LSM1-203ENST00000520755 MAP3K2Q9Y2U5 619 aa19.49■□□□□ 0.71
LSM1-203ENST00000520755 PI4KAP2A4QPH2 592 aa19.48■□□□□ 0.71
LSM1-203ENST00000520755 FAM177BA6PVY3 158 aa19.48■□□□□ 0.71
LSM1-203ENST00000520755 F6X3S4 739 aa19.48■□□□□ 0.71
LSM1-203ENST00000520755 SERPINB2P05120 415 aa19.48■□□□□ 0.71
LSM1-203ENST00000520755 RLBP1P12271 317 aa19.48■□□□□ 0.71
LSM1-203ENST00000520755 TCIRG1Q13488 830 aa19.48■□□□□ 0.71
LSM1-203ENST00000520755 C20orf194Q5TEA3 1177 aa19.48■□□□□ 0.71
LSM1-203ENST00000520755 KSR2Q6VAB6 950 aa19.48■□□□□ 0.71
LSM1-203ENST00000520755 PI4KAP1Q8N8J0 262 aa19.48■□□□□ 0.71
LSM1-203ENST00000520755 NPHP1O15259 732 aa19.47■□□□□ 0.71
LSM1-203ENST00000520755 ZNF34Q8IZ26 560 aa19.47■□□□□ 0.71
LSM1-203ENST00000520755 MYD88Q99836 296 aa19.47■□□□□ 0.71
LSM1-203ENST00000520755 UBN2Q6ZU65 1347 aa19.47■□□□□ 0.71
LSM1-203ENST00000520755 LAMB2P55268 1798 aa19.47■□□□□ 0.71
LSM1-203ENST00000520755 KIF13BQ9NQT8 1826 aa19.46■□□□□ 0.71
LSM1-203ENST00000520755 ATP5J2-PTCD1G3V325 749 aa19.46■□□□□ 0.71
LSM1-203ENST00000520755 NBPF5PQ86XG9 351 aaPredicted RBP19.46■□□□□ 0.71
LSM1-203ENST00000520755 API5Q9BZZ5 524 aaKnown RBP19.46■□□□□ 0.71
LSM1-203ENST00000520755 SRCAPQ6ZRS2 3230 aa19.45■□□□□ 0.7
LSM1-203ENST00000520755 CLUAP1Q96AJ1 413 aa19.45■□□□□ 0.7
LSM1-203ENST00000520755 METTL22Q9BUU2 404 aaPredicted RBP19.45■□□□□ 0.7
LSM1-203ENST00000520755 ANKRD31Q8N7Z5 1873 aa19.44■□□□□ 0.7
LSM1-203ENST00000520755 IPO8O15397 1037 aaKnown RBP19.44■□□□□ 0.7
LSM1-203ENST00000520755 SUSD4Q5VX71 490 aa19.44■□□□□ 0.7
LSM1-203ENST00000520755 CCDC24Q8N4L8 307 aa19.44■□□□□ 0.7
LSM1-203ENST00000520755 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms