RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, humanhuman

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-223ENST00000515459 CEMIPQ8WUJ3 1361 aa21.18■□□□□ 0.98
LMNA-223ENST00000515459 NPC1L1Q9UHC9 1359 aa21.18■□□□□ 0.98
LMNA-223ENST00000515459 BTBD11A6QL63 1104 aa21.17■□□□□ 0.98
LMNA-223ENST00000515459 SOGA3Q5TF21 947 aa21.17■□□□□ 0.98
LMNA-223ENST00000515459 SRGNP10124 158 aa21.16■□□□□ 0.98
LMNA-223ENST00000515459 PRPF40BQ6NWY9 871 aaKnown RBP21.16■□□□□ 0.98
LMNA-223ENST00000515459 DZIP3Q86Y13 1208 aaKnown RBP21.16■□□□□ 0.98
LMNA-223ENST00000515459 MASTLQ96GX5 879 aa21.16■□□□□ 0.98
LMNA-223ENST00000515459 CNGB1Q14028 1251 aaPredicted RBP21.15■□□□□ 0.98
LMNA-223ENST00000515459 CHADLQ6NUI6 762 aa21.15■□□□□ 0.98
LMNA-223ENST00000515459 KCNQ3O43525 872 aa21.14■□□□□ 0.97
LMNA-223ENST00000515459 DDNO94850 711 aaPredicted RBP21.14■□□□□ 0.97
LMNA-223ENST00000515459 CREBZFQ9NS37 354 aa21.14■□□□□ 0.97
LMNA-223ENST00000515459 PHACTR3Q96KR7 559 aa21.13■□□□□ 0.97
LMNA-223ENST00000515459 USP16Q9Y5T5 823 aa21.13■□□□□ 0.97
LMNA-223ENST00000515459 PRKAR2BP31323 418 aa21.12■□□□□ 0.97
LMNA-223ENST00000515459 CLEC4GQ6UXB4 293 aa21.12■□□□□ 0.97
LMNA-223ENST00000515459 NBPF5PQ86XG9 351 aaPredicted RBP21.12■□□□□ 0.97
LMNA-223ENST00000515459 SCN4AP35499 1836 aa21.12■□□□□ 0.97
LMNA-223ENST00000515459 POTEIP0CG38 1075 aa21.11■□□□□ 0.97
LMNA-223ENST00000515459 POTEJP0CG39 1038 aa21.11■□□□□ 0.97
LMNA-223ENST00000515459 PIP4K2AP48426 406 aaPredicted RBP21.11■□□□□ 0.97
LMNA-223ENST00000515459 ZNF652Q9Y2D9 606 aa21.11■□□□□ 0.97
LMNA-223ENST00000515459 IQCA1LA6NCM1 817 aa21.1■□□□□ 0.97
LMNA-223ENST00000515459 CFAP53Q96M91 514 aa21.1■□□□□ 0.97
LMNA-223ENST00000515459 RSPH6AQ9H0K4 717 aa21.1■□□□□ 0.97
LMNA-223ENST00000515459 MKRN1Q9UHC7 482 aaKnown RBP21.1■□□□□ 0.97
LMNA-223ENST00000515459 NPR1P16066 1061 aa21.09■□□□□ 0.97
LMNA-223ENST00000515459 CCDC93Q567U6 631 aa21.09■□□□□ 0.97
LMNA-223ENST00000515459 PRAMEF22A3QJZ6 481 aa21.08■□□□□ 0.97
LMNA-223ENST00000515459 SNRPA1P09661 255 aaKnown RBP21.08■□□□□ 0.97
LMNA-223ENST00000515459 C7orf43Q8WVR3 580 aa21.08■□□□□ 0.97
LMNA-223ENST00000515459 RTF1Q92541 710 aaKnown RBP21.08■□□□□ 0.97
LMNA-223ENST00000515459 TPTE2Q6XPS3 522 aa21.07■□□□□ 0.96
LMNA-223ENST00000515459 LDHDQ86WU2 507 aa21.07■□□□□ 0.96
LMNA-223ENST00000515459 L3MBTL3Q96JM7 780 aaPredicted RBP21.07■□□□□ 0.96
LMNA-223ENST00000515459 NUDCQ9Y266 331 aa21.07■□□□□ 0.96
LMNA-223ENST00000515459 KLRG2A4D1S0 409 aaPredicted RBP21.06■□□□□ 0.96
LMNA-223ENST00000515459 PASKQ96RG2 1323 aa21.05■□□□□ 0.96
LMNA-223ENST00000515459 RGL2O15211 777 aa21.05■□□□□ 0.96
LMNA-223ENST00000515459 FKBP4Q02790 459 aaKnown RBP eCLIP21.05■□□□□ 0.96
LMNA-223ENST00000515459 MCM10Q7L590 875 aa21.05■□□□□ 0.96
LMNA-223ENST00000515459 TAF1DQ9H5J8 278 aaPredicted RBP21.05■□□□□ 0.96
LMNA-223ENST00000515459 NIP7Q9Y221 180 aaKnown RBP eCLIP21.05■□□□□ 0.96
LMNA-223ENST00000515459 CNTNAP1P78357 1384 aa21.04■□□□□ 0.96
LMNA-223ENST00000515459 NBPF26B4DH59 902 aa21.03■□□□□ 0.96
LMNA-223ENST00000515459 NBPF10Q6P3W6 841 aaKnown RBP21.03■□□□□ 0.96
LMNA-223ENST00000515459 RTKN2Q8IZC4 609 aa21.03■□□□□ 0.96
LMNA-223ENST00000515459 NBPF15Q8N660 670 aa21.03■□□□□ 0.96
LMNA-223ENST00000515459 ZNF277Q9NRM2 450 aaPredicted RBP21.03■□□□□ 0.96
LMNA-223ENST00000515459 U2AF1L5P0DN76 240 aaPredicted RBP21.02■□□□□ 0.96
LMNA-223ENST00000515459 ALDH1B1P30837 517 aa21.02■□□□□ 0.96
LMNA-223ENST00000515459 U2AF1Q01081 240 aaKnown RBP eCLIP21.02■□□□□ 0.96
LMNA-223ENST00000515459 HACL1Q9UJ83 578 aa21.02■□□□□ 0.96
LMNA-223ENST00000515459 ZNF541Q9H0D2 1346 aa21.02■□□□□ 0.95
LMNA-223ENST00000515459 FAM177BA6PVY3 158 aa21.01■□□□□ 0.95
LMNA-223ENST00000515459 EAPPQ56P03 285 aaPredicted RBP21.01■□□□□ 0.95
LMNA-223ENST00000515459 LAMB4A4D0S4 1761 aa21■□□□□ 0.95
LMNA-223ENST00000515459 TMEM88BA6NKF7 163 aa21■□□□□ 0.95
LMNA-223ENST00000515459 HTATSF1O43719 755 aaKnown RBP21■□□□□ 0.95
LMNA-223ENST00000515459 ITGBL1O95965 494 aaPredicted RBP21■□□□□ 0.95
LMNA-223ENST00000515459 GTF2E1P29083 439 aaPredicted RBP21■□□□□ 0.95
LMNA-223ENST00000515459 DCTN1Q14203 1278 aa21■□□□□ 0.95
LMNA-223ENST00000515459 OLFM4Q6UX06 510 aa21■□□□□ 0.95
LMNA-223ENST00000515459 CLEC11AQ9Y240 323 aa21■□□□□ 0.95
LMNA-223ENST00000515459 ADAMTSL1Q8N6G6 1762 aa21■□□□□ 0.95
LMNA-223ENST00000515459 FOXN1O15353 648 aa20.99■□□□□ 0.95
LMNA-223ENST00000515459 EPHX2P34913 555 aa20.99■□□□□ 0.95
LMNA-223ENST00000515459 IARSP41252 1262 aaKnown RBP20.99■□□□□ 0.95
LMNA-223ENST00000515459 HLFQ16534 295 aa20.99■□□□□ 0.95
LMNA-223ENST00000515459 TAF7Q15545 349 aaPredicted RBP20.98■□□□□ 0.95
LMNA-223ENST00000515459 PNMA8AQ86V59 439 aaPredicted RBP20.98■□□□□ 0.95
LMNA-223ENST00000515459 FZD9O00144 591 aa20.97■□□□□ 0.95
LMNA-223ENST00000515459 PPP2R1AP30153 589 aa20.97■□□□□ 0.95
LMNA-223ENST00000515459 VEGFBP49765 207 aa20.97■□□□□ 0.95
LMNA-223ENST00000515459 SYNE4Q8N205 404 aa20.97■□□□□ 0.95
LMNA-223ENST00000515459 PRDM10Q9NQV6 1147 aa20.97■□□□□ 0.95
LMNA-223ENST00000515459 RNF123Q5XPI4 1314 aa20.97■□□□□ 0.95
LMNA-223ENST00000515459 AIDAQ96BJ3 306 aa20.96■□□□□ 0.95
LMNA-223ENST00000515459 NYXQ9GZU5 481 aa20.96■□□□□ 0.95
LMNA-223ENST00000515459 NUP98P52948 1817 aa20.96■□□□□ 0.95
LMNA-223ENST00000515459 GPC2Q8N158 579 aa20.95■□□□□ 0.94
LMNA-223ENST00000515459 JDP2Q8WYK2 163 aa20.95■□□□□ 0.94
LMNA-223ENST00000515459 PSMD1Q99460 953 aa20.95■□□□□ 0.94
LMNA-223ENST00000515459 CTCFP49711 727 aaPredicted RBP20.94■□□□□ 0.94
LMNA-223ENST00000515459 CRY2Q49AN0 593 aa20.94■□□□□ 0.94
LMNA-223ENST00000515459 CNTROBQ8N137 903 aa20.94■□□□□ 0.94
LMNA-223ENST00000515459 MIS18AQ9NYP9 233 aa20.94■□□□□ 0.94
LMNA-223ENST00000515459 SNED1Q8TER0 1413 aa20.94■□□□□ 0.94
LMNA-223ENST00000515459 DLG5Q8TDM6 1919 aa20.94■□□□□ 0.94
LMNA-223ENST00000515459 KDM3BQ7LBC6 1761 aa20.93■□□□□ 0.94
LMNA-223ENST00000515459 ERVV-1B6SEH8 477 aa20.93■□□□□ 0.94
LMNA-223ENST00000515459 CC2D2BQ6DHV5 1058 aa20.93■□□□□ 0.94
LMNA-223ENST00000515459 NUTM1Q86Y26 1132 aa20.93■□□□□ 0.94
LMNA-223ENST00000515459 NGEFQ8N5V2 710 aa20.93■□□□□ 0.94
LMNA-223ENST00000515459 MAP1SQ66K74 1059 aaPredicted RBP20.92■□□□□ 0.94
LMNA-223ENST00000515459 ABCC12Q96J65 1359 aa20.92■□□□□ 0.94
LMNA-223ENST00000515459 RASSF10A6NK89 507 aa20.91■□□□□ 0.94
LMNA-223ENST00000515459 NEFMP07197 916 aa20.91■□□□□ 0.94
LMNA-223ENST00000515459 EIF6P56537 245 aaKnown RBP20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms