RNA–Protein interactions for RNA: ENST00000515351.1

PCDH1-208, Transcript of protocadherin 1, humanhuman

TSL 2

Gene PCDH1, Length 2,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-208ENST00000515351 SNX14Q9Y5W7 946 aa18.14■□□□□ 0.5
PCDH1-208ENST00000515351 GRM8O00222 908 aa18.14■□□□□ 0.49
PCDH1-208ENST00000515351 DDX58O95786 925 aaKnown RBP18.14■□□□□ 0.49
PCDH1-208ENST00000515351 ECHDC1Q9NTX5 307 aa18.14■□□□□ 0.49
PCDH1-208ENST00000515351 COL18A1P39060 1754 aa18.14■□□□□ 0.49
PCDH1-208ENST00000515351 PDIA6Q15084 440 aa18.13■□□□□ 0.49
PCDH1-208ENST00000515351 KIAA1211Q6ZU35 1233 aa18.13■□□□□ 0.49
PCDH1-208ENST00000515351 PA2G4Q9UQ80 394 aaKnown RBP18.13■□□□□ 0.49
PCDH1-208ENST00000515351 KDM6AO15550 1401 aaPredicted RBP18.13■□□□□ 0.49
PCDH1-208ENST00000515351 TRIM44Q96DX7 344 aaPredicted RBP18.13■□□□□ 0.49
PCDH1-208ENST00000515351 GPATCH3Q96I76 525 aa18.13■□□□□ 0.49
PCDH1-208ENST00000515351 C19orf44Q9H6X5 657 aa18.13■□□□□ 0.49
PCDH1-208ENST00000515351 ZC3H6P61129 1189 aaKnown RBP18.12■□□□□ 0.49
PCDH1-208ENST00000515351 CCDC173Q0VFZ6 552 aa18.12■□□□□ 0.49
PCDH1-208ENST00000515351 ZNF790Q6PG37 636 aa18.12■□□□□ 0.49
PCDH1-208ENST00000515351 KAZALD1Q96I82 304 aa18.12■□□□□ 0.49
PCDH1-208ENST00000515351 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.12■□□□□ 0.49
PCDH1-208ENST00000515351 IFIT2P09913 472 aaKnown RBP18.12■□□□□ 0.49
PCDH1-208ENST00000515351 RAPGEF4Q8WZA2 1011 aa18.12■□□□□ 0.49
PCDH1-208ENST00000515351 SUCLG2Q96I99 432 aa18.12■□□□□ 0.49
PCDH1-208ENST00000515351 TTC14Q96N46 770 aa18.12■□□□□ 0.49
PCDH1-208ENST00000515351 PPP1R9BQ96SB3 815 aa18.12■□□□□ 0.49
PCDH1-208ENST00000515351 DIAPH3Q9NSV4 1193 aa18.12■□□□□ 0.49
PCDH1-208ENST00000515351 ESPNB1AK53 854 aa18.11■□□□□ 0.49
PCDH1-208ENST00000515351 RASEFQ8IZ41 740 aa18.11■□□□□ 0.49
PCDH1-208ENST00000515351 RUFY2Q8WXA3 655 aa18.11■□□□□ 0.49
PCDH1-208ENST00000515351 SPG7Q9UQ90 795 aa18.11■□□□□ 0.49
PCDH1-208ENST00000515351 ABCC6O95255 1503 aa18.11■□□□□ 0.49
PCDH1-208ENST00000515351 NPHP3Q7Z494 1330 aa18.11■□□□□ 0.49
PCDH1-208ENST00000515351 SLC52A2Q9HAB3 445 aa18.11■□□□□ 0.49
PCDH1-208ENST00000515351 RBM27Q9P2N5 1060 aaKnown RBP18.11■□□□□ 0.49
PCDH1-208ENST00000515351 MBD3O95983 291 aa18.1■□□□□ 0.49
PCDH1-208ENST00000515351 AIMP1Q12904 312 aaKnown RBP18.1■□□□□ 0.49
PCDH1-208ENST00000515351 BICC1Q9H694 974 aaKnown RBP18.1■□□□□ 0.49
PCDH1-208ENST00000515351 ERBB4Q15303 1308 aa18.1■□□□□ 0.49
PCDH1-208ENST00000515351 AACSQ86V21 672 aa18.1■□□□□ 0.49
PCDH1-208ENST00000515351 ANP32BQ92688 251 aaKnown RBP18.1■□□□□ 0.49
PCDH1-208ENST00000515351 TMEM63CQ9P1W3 806 aa18.1■□□□□ 0.49
PCDH1-208ENST00000515351 AFDNP55196 1824 aaKnown RBP18.1■□□□□ 0.49
PCDH1-208ENST00000515351 SLC39A6Q13433 755 aa18.09■□□□□ 0.49
PCDH1-208ENST00000515351 NLRP2Q9NX02 1062 aa18.09■□□□□ 0.49
PCDH1-208ENST00000515351 NSFL1CQ9UNZ2 370 aaKnown RBP18.09■□□□□ 0.49
PCDH1-208ENST00000515351 MEGF6O75095 1541 aa18.09■□□□□ 0.49
PCDH1-208ENST00000515351 IGKV5-2P06315 115 aa18.09■□□□□ 0.49
PCDH1-208ENST00000515351 EVI5LQ96CN4 794 aa18.09■□□□□ 0.49
PCDH1-208ENST00000515351 WDR33Q9C0J8 1336 aaKnown RBP18.08■□□□□ 0.49
PCDH1-208ENST00000515351 SASH1O94885 1247 aa18.08■□□□□ 0.49
PCDH1-208ENST00000515351 PHKG2P15735 406 aa18.08■□□□□ 0.49
PCDH1-208ENST00000515351 PRIM1P49642 420 aaKnown RBP18.08■□□□□ 0.49
PCDH1-208ENST00000515351 AK2P54819 239 aa18.08■□□□□ 0.49
PCDH1-208ENST00000515351 LARP1Q6PKG0 1096 aaKnown RBP18.08■□□□□ 0.49
PCDH1-208ENST00000515351 RIC3Q7Z5B4 369 aa18.08■□□□□ 0.49
PCDH1-208ENST00000515351 PKD1L3Q7Z443 1732 aa18.08■□□□□ 0.48
PCDH1-208ENST00000515351 TATP17735 454 aaPredicted RBP18.08■□□□□ 0.48
PCDH1-208ENST00000515351 NFATC2IPQ8NCF5 419 aa18.07■□□□□ 0.48
PCDH1-208ENST00000515351 RBSNQ9H1K0 784 aa18.07■□□□□ 0.48
PCDH1-208ENST00000515351 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.07■□□□□ 0.48
PCDH1-208ENST00000515351 LIMCH1Q9UPQ0 1083 aa18.07■□□□□ 0.48
PCDH1-208ENST00000515351 RPAP1Q9BWH6 1393 aaPredicted RBP18.07■□□□□ 0.48
PCDH1-208ENST00000515351 MRC1P22897 1456 aa18.07■□□□□ 0.48
PCDH1-208ENST00000515351 PTH1RQ03431 593 aa18.07■□□□□ 0.48
PCDH1-208ENST00000515351 G3BP1Q13283 466 aaKnown RBP eCLIP18.07■□□□□ 0.48
PCDH1-208ENST00000515351 RUFY3Q7L099 469 aa18.07■□□□□ 0.48
PCDH1-208ENST00000515351 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.07■□□□□ 0.48
PCDH1-208ENST00000515351 STRCP1A6NGW2 1772 aa18.07■□□□□ 0.48
PCDH1-208ENST00000515351 NEXNQ0ZGT2 675 aa18.06■□□□□ 0.48
PCDH1-208ENST00000515351 EAF2Q96CJ1 260 aaPredicted RBP18.06■□□□□ 0.48
PCDH1-208ENST00000515351 ARFGEF2Q9Y6D5 1785 aa18.06■□□□□ 0.48
PCDH1-208ENST00000515351 NEURL1BA8MQ27 555 aa18.06■□□□□ 0.48
PCDH1-208ENST00000515351 MYL6BP14649 208 aa18.06■□□□□ 0.48
PCDH1-208ENST00000515351 CASTP20810 708 aaKnown RBP18.06■□□□□ 0.48
PCDH1-208ENST00000515351 LRSAM1Q6UWE0 723 aa18.06■□□□□ 0.48
PCDH1-208ENST00000515351 KCNB2Q92953 911 aa18.06■□□□□ 0.48
PCDH1-208ENST00000515351 PLEKHG2Q9H7P9 1386 aa18.05■□□□□ 0.48
PCDH1-208ENST00000515351 XAGE3Q8WTP9 111 aa18.05■□□□□ 0.48
PCDH1-208ENST00000515351 SYCE3A1L190 88 aa18.05■□□□□ 0.48
PCDH1-208ENST00000515351 GCKRQ14397 625 aa18.05■□□□□ 0.48
PCDH1-208ENST00000515351 IFNL2Q8IZJ0 200 aa18.05■□□□□ 0.48
PCDH1-208ENST00000515351 LAMB4A4D0S4 1761 aa18.04■□□□□ 0.48
PCDH1-208ENST00000515351 ATF3P18847 181 aa18.04■□□□□ 0.48
PCDH1-208ENST00000515351 COPS6Q7L5N1 327 aa18.04■□□□□ 0.48
PCDH1-208ENST00000515351 ZNF496Q96IT1 587 aaPredicted RBP18.04■□□□□ 0.48
PCDH1-208ENST00000515351 METTL22Q9BUU2 404 aaPredicted RBP18.04■□□□□ 0.48
PCDH1-208ENST00000515351 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.04■□□□□ 0.48
PCDH1-208ENST00000515351 CCDC171Q6TFL3 1326 aa18.04■□□□□ 0.48
PCDH1-208ENST00000515351 DCCP43146 1447 aa18.04■□□□□ 0.48
PCDH1-208ENST00000515351 HIP1O00291 1037 aa18.04■□□□□ 0.48
PCDH1-208ENST00000515351 PRPF40BQ6NWY9 871 aaKnown RBP18.04■□□□□ 0.48
PCDH1-208ENST00000515351 TM6SF1Q9BZW5 370 aa18.04■□□□□ 0.48
PCDH1-208ENST00000515351 CPA1P15085 419 aa18.03■□□□□ 0.48
PCDH1-208ENST00000515351 DDX17Q92841 729 aaKnown RBP18.03■□□□□ 0.48
PCDH1-208ENST00000515351 CCDC8Q9H0W5 538 aaPredicted RBP18.03■□□□□ 0.48
PCDH1-208ENST00000515351 NECTIN1Q15223 517 aa18.03■□□□□ 0.48
PCDH1-208ENST00000515351 ADCK5Q3MIX3 580 aa18.03■□□□□ 0.48
PCDH1-208ENST00000515351 VPS53Q5VIR6 699 aa18.03■□□□□ 0.48
PCDH1-208ENST00000515351 LRP10Q7Z4F1 713 aa18.03■□□□□ 0.48
PCDH1-208ENST00000515351 JAKMIP1Q96N16 626 aaKnown RBP18.03■□□□□ 0.48
PCDH1-208ENST00000515351 MYD88Q99836 296 aa18.03■□□□□ 0.48
PCDH1-208ENST00000515351 LARP6Q9BRS8 491 aaKnown RBP18.03■□□□□ 0.48
PCDH1-208ENST00000515351 SIL1Q9H173 461 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms