RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 LRRIQ1Q96JM4 1722 aa10.08□□□□□ -0.8
LIMCH1-218ENST00000513024 PAFAH1B1P43034 410 aa10.08□□□□□ -0.8
LIMCH1-218ENST00000513024 RPAINQ86UA6 219 aa10.08□□□□□ -0.8
LIMCH1-218ENST00000513024 CCDC83Q8IWF9 413 aa10.08□□□□□ -0.8
LIMCH1-218ENST00000513024 DDX54Q8TDD1 881 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-218ENST00000513024 TBC1D2BQ9UPU7 963 aa10.08□□□□□ -0.8
LIMCH1-218ENST00000513024 RBBP5Q15291 538 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-218ENST00000513024 CCDC114Q96M63 670 aa10.08□□□□□ -0.8
LIMCH1-218ENST00000513024 TANGO6Q9C0B7 1094 aa10.08□□□□□ -0.8
LIMCH1-218ENST00000513024 LMTK3Q96Q04 1460 aa10.08□□□□□ -0.8
LIMCH1-218ENST00000513024 NOL3O60936 208 aaKnown RBP10.07□□□□□ -0.8
LIMCH1-218ENST00000513024 CEP112Q8N8E3 955 aa10.07□□□□□ -0.8
LIMCH1-218ENST00000513024 ANKRD18BA2A2Z9 1011 aa10.07□□□□□ -0.8
LIMCH1-218ENST00000513024 GDPD2Q9HCC8 539 aa10.07□□□□□ -0.8
LIMCH1-218ENST00000513024 C9orf84Q5VXU9 1444 aa10.07□□□□□ -0.8
LIMCH1-218ENST00000513024 EIF4G3O43432 1585 aaKnown RBP10.07□□□□□ -0.8
LIMCH1-218ENST00000513024 DNMT1P26358 1616 aaKnown RBP10.07□□□□□ -0.8
LIMCH1-218ENST00000513024 KIF4AO95239 1232 aa10.07□□□□□ -0.8
LIMCH1-218ENST00000513024 TMEM57Q8N5G2 664 aa10.07□□□□□ -0.8
LIMCH1-218ENST00000513024 ATRIPQ8WXE1 791 aa10.07□□□□□ -0.8
LIMCH1-218ENST00000513024 RPGRIP1LQ68CZ1 1315 aa10.07□□□□□ -0.8
LIMCH1-218ENST00000513024 GCKP35557 465 aa10.07□□□□□ -0.8
LIMCH1-218ENST00000513024 ZBTB17Q13105 803 aa10.07□□□□□ -0.8
LIMCH1-218ENST00000513024 LMNTD2Q8IXW0 634 aa10.07□□□□□ -0.8
LIMCH1-218ENST00000513024 RAPGEF3O95398 923 aa10.06□□□□□ -0.8
LIMCH1-218ENST00000513024 KRT18P05783 430 aaKnown RBP10.06□□□□□ -0.8
LIMCH1-218ENST00000513024 DDX23Q9BUQ8 820 aaKnown RBP10.06□□□□□ -0.8
LIMCH1-218ENST00000513024 SRRTQ9BXP5 876 aaKnown RBP10.06□□□□□ -0.8
LIMCH1-218ENST00000513024 BAG6P46379 1132 aa10.06□□□□□ -0.8
LIMCH1-218ENST00000513024 STIM1Q13586 685 aa10.06□□□□□ -0.8
LIMCH1-218ENST00000513024 DBN1Q16643 649 aa10.06□□□□□ -0.8
LIMCH1-218ENST00000513024 HDGFL1Q5TGJ6 251 aa10.06□□□□□ -0.8
LIMCH1-218ENST00000513024 CKAP2LQ8IYA6 745 aa10.06□□□□□ -0.8
LIMCH1-218ENST00000513024 AFAP1Q8N556 730 aa10.06□□□□□ -0.8
LIMCH1-218ENST00000513024 RALGAPBQ86X10 1494 aa10.06□□□□□ -0.8
LIMCH1-218ENST00000513024 EXOC5O00471 708 aa10.06□□□□□ -0.8
LIMCH1-218ENST00000513024 CASTP20810 708 aaKnown RBP10.06□□□□□ -0.8
LIMCH1-218ENST00000513024 TRIM22Q8IYM9 498 aa10.06□□□□□ -0.8
LIMCH1-218ENST00000513024 ZSCAN31Q96LW9 406 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-218ENST00000513024 ZHX3Q9H4I2 956 aa10.06□□□□□ -0.8
LIMCH1-218ENST00000513024 STARD3NLO95772 234 aa10.06□□□□□ -0.8
LIMCH1-218ENST00000513024 RBM5P52756 815 aaKnown RBP eCLIP10.06□□□□□ -0.8
LIMCH1-218ENST00000513024 CCDC183Q5T5S1 534 aa10.06□□□□□ -0.8
LIMCH1-218ENST00000513024 RAI14Q9P0K7 980 aa10.06□□□□□ -0.8
LIMCH1-218ENST00000513024 CLIP2Q9UDT6 1046 aa10.06□□□□□ -0.8
LIMCH1-218ENST00000513024 EXOC6BQ9Y2D4 811 aa10.06□□□□□ -0.8
LIMCH1-218ENST00000513024 SCAPERQ9BY12 1400 aa10.05□□□□□ -0.8
LIMCH1-218ENST00000513024 GABPB1Q06547 395 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-218ENST00000513024 SLFN5Q08AF3 891 aa10.05□□□□□ -0.8
LIMCH1-218ENST00000513024 WHAMMP3Q1A5X7 153 aa10.05□□□□□ -0.8
LIMCH1-218ENST00000513024 CEP135Q66GS9 1140 aa10.05□□□□□ -0.8
LIMCH1-218ENST00000513024 PPFIBP2Q8ND30 876 aa10.05□□□□□ -0.8
LIMCH1-218ENST00000513024 NSRP1Q9H0G5 558 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-218ENST00000513024 TMX1Q9H3N1 280 aa10.05□□□□□ -0.8
LIMCH1-218ENST00000513024 CCDC171Q6TFL3 1326 aa10.05□□□□□ -0.8
LIMCH1-218ENST00000513024 CEP120Q8N960 986 aa10.05□□□□□ -0.8
LIMCH1-218ENST00000513024 FAM177BA6PVY3 158 aa10.05□□□□□ -0.8
LIMCH1-218ENST00000513024 SRGAP3O43295 1099 aa10.05□□□□□ -0.8
LIMCH1-218ENST00000513024 CCT4P50991 539 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-218ENST00000513024 SH2D4BQ5SQS7 431 aa10.05□□□□□ -0.8
LIMCH1-218ENST00000513024 ANKS4BQ8N8V4 417 aa10.05□□□□□ -0.8
LIMCH1-218ENST00000513024 NAA15Q9BXJ9 866 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-218ENST00000513024 STIM2Q9P246 746 aa10.05□□□□□ -0.8
LIMCH1-218ENST00000513024 UHRF1BP1Q6BDS2 1440 aa10.05□□□□□ -0.8
LIMCH1-218ENST00000513024 SNW1Q13573 536 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-218ENST00000513024 PANK2Q9BZ23 570 aa10.05□□□□□ -0.8
LIMCH1-218ENST00000513024 CLEC11AQ9Y240 323 aa10.05□□□□□ -0.8
LIMCH1-218ENST00000513024 PER1O15534 1290 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-218ENST00000513024 GSDMDP57764 484 aa10.04□□□□□ -0.8
LIMCH1-218ENST00000513024 ZNF397Q8NF99 534 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-218ENST00000513024 FAM114A2Q9NRY5 505 aa10.04□□□□□ -0.8
LIMCH1-218ENST00000513024 ZNF853P0CG23 659 aa10.04□□□□□ -0.8
LIMCH1-218ENST00000513024 MCM6Q14566 821 aa10.04□□□□□ -0.8
LIMCH1-218ENST00000513024 MAATS1Q7Z4T9 603 aa10.04□□□□□ -0.8
LIMCH1-218ENST00000513024 NBPF11Q86T75 865 aa10.04□□□□□ -0.8
LIMCH1-218ENST00000513024 SRCIN1Q9C0H9 1055 aa10.04□□□□□ -0.8
LIMCH1-218ENST00000513024 EIF5P55010 431 aaKnown RBP10.04□□□□□ -0.8
LIMCH1-218ENST00000513024 SULT6B1Q6IMI4 303 aa10.04□□□□□ -0.8
LIMCH1-218ENST00000513024 SPATS2LQ9NUQ6 558 aaKnown RBP10.04□□□□□ -0.8
LIMCH1-218ENST00000513024 STK32BQ9NY57 414 aa10.04□□□□□ -0.8
LIMCH1-218ENST00000513024 ADCY5O95622 1261 aa10.04□□□□□ -0.8
LIMCH1-218ENST00000513024 HLTFQ14527 1009 aaKnown RBP eCLIP10.04□□□□□ -0.8
LIMCH1-218ENST00000513024 AACSQ86V21 672 aa10.04□□□□□ -0.8
LIMCH1-218ENST00000513024 GSTTP1A0A1W2PQM5 241 aa10.03□□□□□ -0.8
LIMCH1-218ENST00000513024 XRCC6P12956 609 aaKnown RBP eCLIP10.03□□□□□ -0.8
LIMCH1-218ENST00000513024 KRBA2Q6ZNG9 492 aa10.03□□□□□ -0.8
LIMCH1-218ENST00000513024 RBM27Q9P2N5 1060 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-218ENST00000513024 PBRM1Q86U86 1689 aa10.03□□□□□ -0.8
LIMCH1-218ENST00000513024 HSF2BPO75031 334 aa10.03□□□□□ -0.8
LIMCH1-218ENST00000513024 TACC1O75410 805 aa10.03□□□□□ -0.8
LIMCH1-218ENST00000513024 SH3BGRP55822 239 aaPredicted RBP10.03□□□□□ -0.8
LIMCH1-218ENST00000513024 MAP3K9P80192 1104 aa10.03□□□□□ -0.8
LIMCH1-218ENST00000513024 NOLC1Q14978 699 aaKnown RBP eCLIP10.03□□□□□ -0.8
LIMCH1-218ENST00000513024 TMEM132AQ24JP5 1023 aa10.03□□□□□ -0.8
LIMCH1-218ENST00000513024 SMARCA5O60264 1052 aaPredicted RBP10.03□□□□□ -0.8
LIMCH1-218ENST00000513024 PCK1P35558 622 aa10.03□□□□□ -0.8
LIMCH1-218ENST00000513024 SPA17Q15506 151 aa10.03□□□□□ -0.8
LIMCH1-218ENST00000513024 NUTM1Q86Y26 1132 aa10.03□□□□□ -0.8
LIMCH1-218ENST00000513024 GBP7Q8N8V2 638 aaPredicted RBP10.03□□□□□ -0.8
LIMCH1-218ENST00000513024 DISP1Q96F81 1524 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms