RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 MTHFSP49914 203 aa12.73□□□□□ -0.37
NUP54-211ENST00000512151 DGKZQ13574 1117 aa12.73□□□□□ -0.37
NUP54-211ENST00000512151 PAXIP1Q6ZW49 1069 aaPredicted RBP12.73□□□□□ -0.37
NUP54-211ENST00000512151 BEGAINQ9BUH8 593 aa12.73□□□□□ -0.37
NUP54-211ENST00000512151 BRIP1Q9BX63 1249 aa12.73□□□□□ -0.37
NUP54-211ENST00000512151 PLEKHO1Q53GL0 409 aaPredicted RBP12.72□□□□□ -0.37
NUP54-211ENST00000512151 TBC1D9BQ66K14 1250 aa12.72□□□□□ -0.37
NUP54-211ENST00000512151 PRR5LQ6MZQ0 368 aa12.72□□□□□ -0.37
NUP54-211ENST00000512151 PRPF40BQ6NWY9 871 aaKnown RBP12.72□□□□□ -0.37
NUP54-211ENST00000512151 PDE6BP35913 854 aa12.71□□□□□ -0.37
NUP54-211ENST00000512151 SOX10P56693 466 aa12.71□□□□□ -0.37
NUP54-211ENST00000512151 CST9Q5W186 159 aa12.71□□□□□ -0.37
NUP54-211ENST00000512151 C7orf43Q8WVR3 580 aa12.71□□□□□ -0.37
NUP54-211ENST00000512151 ECE1P42892 770 aa12.7□□□□□ -0.38
NUP54-211ENST00000512151 SLC39A6Q13433 755 aa12.7□□□□□ -0.38
NUP54-211ENST00000512151 PRPF38BQ5VTL8 546 aaKnown RBP12.7□□□□□ -0.38
NUP54-211ENST00000512151 OLFM4Q6UX06 510 aa12.7□□□□□ -0.38
NUP54-211ENST00000512151 ZNF277Q9NRM2 450 aaPredicted RBP12.7□□□□□ -0.38
NUP54-211ENST00000512151 ARFGEF2Q9Y6D5 1785 aa12.7□□□□□ -0.38
NUP54-211ENST00000512151 TRAF5O00463 557 aa12.69□□□□□ -0.38
NUP54-211ENST00000512151 STYK1Q6J9G0 422 aa12.69□□□□□ -0.38
NUP54-211ENST00000512151 PNMA8AQ86V59 439 aaPredicted RBP12.69□□□□□ -0.38
NUP54-211ENST00000512151 AEBP1Q8IUX7 1158 aa12.69□□□□□ -0.38
NUP54-211ENST00000512151 CNKSR1Q969H4 720 aa12.69□□□□□ -0.38
NUP54-211ENST00000512151 PDZRN3Q9UPQ7 1066 aa12.69□□□□□ -0.38
NUP54-211ENST00000512151 SCN11AQ9UI33 1791 aa12.69□□□□□ -0.38
NUP54-211ENST00000512151 SRGNP10124 158 aa12.69□□□□□ -0.38
NUP54-211ENST00000512151 CANXP27824 592 aaKnown RBP12.69□□□□□ -0.38
NUP54-211ENST00000512151 TRIM26Q12899 539 aaPredicted RBP12.69□□□□□ -0.38
NUP54-211ENST00000512151 TLL2Q9Y6L7 1015 aa12.69□□□□□ -0.38
NUP54-211ENST00000512151 FZD9O00144 591 aa12.68□□□□□ -0.38
NUP54-211ENST00000512151 MAP2K2P36507 400 aa12.68□□□□□ -0.38
NUP54-211ENST00000512151 AMOTQ4VCS5 1084 aa12.68□□□□□ -0.38
NUP54-211ENST00000512151 TRPM7Q96QT4 1865 aa12.67□□□□□ -0.38
NUP54-211ENST00000512151 EIF5P55010 431 aaKnown RBP12.67□□□□□ -0.38
NUP54-211ENST00000512151 FKBP4Q02790 459 aaKnown RBP eCLIP12.67□□□□□ -0.38
NUP54-211ENST00000512151 C1orf141Q5JVX7 400 aa12.67□□□□□ -0.38
NUP54-211ENST00000512151 SOGA3Q5TF21 947 aa12.67□□□□□ -0.38
NUP54-211ENST00000512151 LGR6Q9HBX8 967 aa12.67□□□□□ -0.38
NUP54-211ENST00000512151 SCN7AQ01118 1682 aa12.66□□□□□ -0.38
NUP54-211ENST00000512151 TNNT2P45379 298 aaPredicted RBP12.66□□□□□ -0.38
NUP54-211ENST00000512151 CCDC93Q567U6 631 aa12.66□□□□□ -0.38
NUP54-211ENST00000512151 MASTLQ96GX5 879 aa12.66□□□□□ -0.38
NUP54-211ENST00000512151 ZIC5Q96T25 663 aa12.66□□□□□ -0.38
NUP54-211ENST00000512151 SLC52A2Q9HAB3 445 aa12.66□□□□□ -0.38
NUP54-211ENST00000512151 COL4A5P29400 1685 aa12.66□□□□□ -0.38
NUP54-211ENST00000512151 CA12O43570 354 aa12.65□□□□□ -0.38
NUP54-211ENST00000512151 EPS15P42566 896 aa12.65□□□□□ -0.38
NUP54-211ENST00000512151 MRC1P22897 1456 aa12.64□□□□□ -0.39
NUP54-211ENST00000512151 CIAPIN1Q6FI81 312 aa12.64□□□□□ -0.39
NUP54-211ENST00000512151 GPC2Q8N158 579 aa12.64□□□□□ -0.39
NUP54-211ENST00000512151 CNBD1Q8NA66 436 aa12.64□□□□□ -0.39
NUP54-211ENST00000512151 TBC1D2BQ9UPU7 963 aa12.64□□□□□ -0.39
NUP54-211ENST00000512151 SLC24A1O60721 1099 aa12.63□□□□□ -0.39
NUP54-211ENST00000512151 IARSP41252 1262 aaKnown RBP12.63□□□□□ -0.39
NUP54-211ENST00000512151 BRPF1P55201 1214 aaPredicted RBP12.63□□□□□ -0.39
NUP54-211ENST00000512151 SAPCD2Q86UD0 394 aa12.63□□□□□ -0.39
NUP54-211ENST00000512151 SCNN1DP51172 638 aa12.62□□□□□ -0.39
NUP54-211ENST00000512151 SYNE4Q8N205 404 aa12.62□□□□□ -0.39
NUP54-211ENST00000512151 GJA3Q9Y6H8 435 aa12.62□□□□□ -0.39
NUP54-211ENST00000512151 A0A087WZG4 1122 aa12.61□□□□□ -0.39
NUP54-211ENST00000512151 CAMTA2O94983 1202 aa12.61□□□□□ -0.39
NUP54-211ENST00000512151 SNED1Q8TER0 1413 aa12.61□□□□□ -0.39
NUP54-211ENST00000512151 UBR2Q8IWV8 1755 aa12.61□□□□□ -0.39
NUP54-211ENST00000512151 BCORQ6W2J9 1755 aa12.6□□□□□ -0.39
NUP54-211ENST00000512151 RNMTO43148 476 aaKnown RBP12.6□□□□□ -0.39
NUP54-211ENST00000512151 CELF2O95319 508 aaKnown RBP12.6□□□□□ -0.39
NUP54-211ENST00000512151 ST5P78524 1137 aa12.6□□□□□ -0.39
NUP54-211ENST00000512151 VSIG10Q8N0Z9 540 aa12.6□□□□□ -0.39
NUP54-211ENST00000512151 SETDB2Q96T68 719 aa12.6□□□□□ -0.39
NUP54-211ENST00000512151 NPR1P16066 1061 aa12.59□□□□□ -0.39
NUP54-211ENST00000512151 AKAP4Q5JQC9 854 aa12.59□□□□□ -0.39
NUP54-211ENST00000512151 SULT6B1Q6IMI4 303 aa12.59□□□□□ -0.39
NUP54-211ENST00000512151 SLC51AQ86UW1 340 aa12.59□□□□□ -0.39
NUP54-211ENST00000512151 RTKN2Q8IZC4 609 aa12.59□□□□□ -0.39
NUP54-211ENST00000512151 ZNF330Q9Y3S2 320 aaPredicted RBP12.59□□□□□ -0.39
NUP54-211ENST00000512151 KLRG2A4D1S0 409 aaPredicted RBP12.58□□□□□ -0.4
NUP54-211ENST00000512151 NPHP1O15259 732 aa12.58□□□□□ -0.4
NUP54-211ENST00000512151 LMOD1P29536 600 aaPredicted RBP12.58□□□□□ -0.4
NUP54-211ENST00000512151 HHIPL1Q96JK4 782 aa12.58□□□□□ -0.4
NUP54-211ENST00000512151 PCGF6Q9BYE7 350 aa12.58□□□□□ -0.4
NUP54-211ENST00000512151 GLIS2Q9BZE0 524 aaPredicted RBP12.58□□□□□ -0.4
NUP54-211ENST00000512151 USP50Q70EL3 339 aaPredicted RBP12.57□□□□□ -0.4
NUP54-211ENST00000512151 PLSCR2Q9NRY7 297 aa12.57□□□□□ -0.4
NUP54-211ENST00000512151 STARD3NLO95772 234 aa12.56□□□□□ -0.4
NUP54-211ENST00000512151 EIF6P56537 245 aaKnown RBP12.56□□□□□ -0.4
NUP54-211ENST00000512151 U3KPZ7 1027 aaPredicted RBP12.56□□□□□ -0.4
NUP54-211ENST00000512151 A1BGP04217 495 aa12.56□□□□□ -0.4
NUP54-211ENST00000512151 HABP4Q5JVS0 413 aaKnown RBP12.56□□□□□ -0.4
NUP54-211ENST00000512151 JDP2Q8WYK2 163 aa12.56□□□□□ -0.4
NUP54-211ENST00000512151 ZNF496Q96IT1 587 aaPredicted RBP12.56□□□□□ -0.4
NUP54-211ENST00000512151 PSMD1Q99460 953 aa12.56□□□□□ -0.4
NUP54-211ENST00000512151 IL6STP40189 918 aaPredicted RBP12.55□□□□□ -0.4
NUP54-211ENST00000512151 DLK2Q6UY11 383 aa12.55□□□□□ -0.4
NUP54-211ENST00000512151 NBPF5PQ86XG9 351 aaPredicted RBP12.55□□□□□ -0.4
NUP54-211ENST00000512151 ZNF408Q9H9D4 720 aa12.55□□□□□ -0.4
NUP54-211ENST00000512151 IL13P35225 146 aa12.54□□□□□ -0.4
NUP54-211ENST00000512151 NOGQ13253 232 aa12.54□□□□□ -0.4
NUP54-211ENST00000512151 CDCA8Q53HL2 280 aa12.54□□□□□ -0.4
NUP54-211ENST00000512151 HEG1Q9ULI3 1381 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms