RNA–Protein interactions for RNA: ENST00000511774.1

HMGCS1-206, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 4

Gene HMGCS1, Length 500 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-206ENST00000511774 ZNF541Q9H0D2 1346 aa25.85■■□□□ 1.73
HMGCS1-206ENST00000511774 IL6STP40189 918 aaPredicted RBP25.84■■□□□ 1.73
HMGCS1-206ENST00000511774 OLFM4Q6UX06 510 aa25.83■■□□□ 1.73
HMGCS1-206ENST00000511774 MASTLQ96GX5 879 aa25.83■■□□□ 1.73
HMGCS1-206ENST00000511774 SETDB2Q96T68 719 aa25.83■■□□□ 1.73
HMGCS1-206ENST00000511774 WBP1LQ9NX94 342 aa25.83■■□□□ 1.73
HMGCS1-206ENST00000511774 KCNQ3O43525 872 aa25.82■■□□□ 1.72
HMGCS1-206ENST00000511774 CTCFP49711 727 aaPredicted RBP25.82■■□□□ 1.72
HMGCS1-206ENST00000511774 IQCA1LA6NCM1 817 aa25.81■■□□□ 1.72
HMGCS1-206ENST00000511774 TMEM88BA6NKF7 163 aa25.81■■□□□ 1.72
HMGCS1-206ENST00000511774 PIP4K2AP48426 406 aaPredicted RBP25.81■■□□□ 1.72
HMGCS1-206ENST00000511774 LBX1P52954 281 aa25.81■■□□□ 1.72
HMGCS1-206ENST00000511774 COL3A1P02461 1466 aaPredicted RBP25.8■■□□□ 1.72
HMGCS1-206ENST00000511774 DIAPH1O60610 1272 aaKnown RBP25.79■■□□□ 1.72
HMGCS1-206ENST00000511774 EAPPQ56P03 285 aaPredicted RBP25.79■■□□□ 1.72
HMGCS1-206ENST00000511774 ZNF277Q9NRM2 450 aaPredicted RBP25.79■■□□□ 1.72
HMGCS1-206ENST00000511774 ST5P78524 1137 aa25.78■■□□□ 1.72
HMGCS1-206ENST00000511774 TEX13AQ9BXU3 409 aaPredicted RBP25.78■■□□□ 1.72
HMGCS1-206ENST00000511774 TEFQ10587 303 aa25.77■■□□□ 1.72
HMGCS1-206ENST00000511774 SOGA3Q5TF21 947 aa25.77■■□□□ 1.72
HMGCS1-206ENST00000511774 DZIP3Q86Y13 1208 aaKnown RBP25.77■■□□□ 1.72
HMGCS1-206ENST00000511774 AIDAQ96BJ3 306 aa25.77■■□□□ 1.72
HMGCS1-206ENST00000511774 PRAMEF22A3QJZ6 481 aa25.76■■□□□ 1.71
HMGCS1-206ENST00000511774 NPHP1O15259 732 aa25.76■■□□□ 1.71
HMGCS1-206ENST00000511774 HSPA8P11142 646 aaKnown RBP25.76■■□□□ 1.71
HMGCS1-206ENST00000511774 CCDC93Q567U6 631 aa25.76■■□□□ 1.71
HMGCS1-206ENST00000511774 GNAT3A8MTJ3 354 aa25.75■■□□□ 1.71
HMGCS1-206ENST00000511774 SLC34A2O95436 690 aa25.75■■□□□ 1.71
HMGCS1-206ENST00000511774 FKBP4Q02790 459 aaKnown RBP eCLIP25.75■■□□□ 1.71
HMGCS1-206ENST00000511774 FMNL2Q96PY5 1086 aa25.75■■□□□ 1.71
HMGCS1-206ENST00000511774 USP16Q9Y5T5 823 aa25.75■■□□□ 1.71
HMGCS1-206ENST00000511774 CEMIPQ8WUJ3 1361 aa25.74■■□□□ 1.71
HMGCS1-206ENST00000511774 RNF123Q5XPI4 1314 aa25.74■■□□□ 1.71
HMGCS1-206ENST00000511774 RASSF10A6NK89 507 aa25.74■■□□□ 1.71
HMGCS1-206ENST00000511774 EPHX2P34913 555 aa25.74■■□□□ 1.71
HMGCS1-206ENST00000511774 MAP1SQ66K74 1059 aaPredicted RBP25.74■■□□□ 1.71
HMGCS1-206ENST00000511774 HACL1Q9UJ83 578 aa25.74■■□□□ 1.71
HMGCS1-206ENST00000511774 KLRG2A4D1S0 409 aaPredicted RBP25.73■■□□□ 1.71
HMGCS1-206ENST00000511774 TRIM26Q12899 539 aaPredicted RBP25.73■■□□□ 1.71
HMGCS1-206ENST00000511774 ABHD8Q96I13 439 aa25.73■■□□□ 1.71
HMGCS1-206ENST00000511774 CLEC11AQ9Y240 323 aa25.73■■□□□ 1.71
HMGCS1-206ENST00000511774 LTBP1Q14766 1721 aa25.73■■□□□ 1.71
HMGCS1-206ENST00000511774 COL4A5P29400 1685 aa25.73■■□□□ 1.71
HMGCS1-206ENST00000511774 SNED1Q8TER0 1413 aa25.72■■□□□ 1.71
HMGCS1-206ENST00000511774 PER1O15534 1290 aaPredicted RBP25.72■■□□□ 1.71
HMGCS1-206ENST00000511774 NPR1P16066 1061 aa25.72■■□□□ 1.71
HMGCS1-206ENST00000511774 NBPF5PQ86XG9 351 aaPredicted RBP25.72■■□□□ 1.71
HMGCS1-206ENST00000511774 FMR1Q06787 632 aaKnown RBP eCLIP25.71■■□□□ 1.715e-7■■□□□ 12.6
HMGCS1-206ENST00000511774 CC2D1BQ5T0F9 858 aaKnown RBP25.71■■□□□ 1.71
HMGCS1-206ENST00000511774 CNTROBQ8N137 903 aa25.71■■□□□ 1.71
HMGCS1-206ENST00000511774 FZD9O00144 591 aa25.7■■□□□ 1.7
HMGCS1-206ENST00000511774 DEFB115Q30KQ5 88 aa25.7■■□□□ 1.7
HMGCS1-206ENST00000511774 FAM161AQ3B820 660 aa25.7■■□□□ 1.7
HMGCS1-206ENST00000511774 GAS2L2Q8NHY3 880 aa25.69■■□□□ 1.7
HMGCS1-206ENST00000511774 THSD7BQ9C0I4 1608 aa25.69■■□□□ 1.7
HMGCS1-206ENST00000511774 KIF7Q2M1P5 1343 aa25.68■■□□□ 1.7
HMGCS1-206ENST00000511774 WDR33Q9C0J8 1336 aaKnown RBP25.68■■□□□ 1.7
HMGCS1-206ENST00000511774 U2SURPO15042 1029 aaKnown RBP25.68■■□□□ 1.7
HMGCS1-206ENST00000511774 CLEC4GQ6UXB4 293 aa25.68■■□□□ 1.7
HMGCS1-206ENST00000511774 PHACTR3Q96KR7 559 aa25.68■■□□□ 1.7
HMGCS1-206ENST00000511774 CLSPNQ9HAW4 1339 aa25.67■■□□□ 1.7
HMGCS1-206ENST00000511774 BTBD11A6QL63 1104 aa25.67■■□□□ 1.7
HMGCS1-206ENST00000511774 NBPF26B4DH59 902 aa25.67■■□□□ 1.7
HMGCS1-206ENST00000511774 IARSP41252 1262 aaKnown RBP25.67■■□□□ 1.7
HMGCS1-206ENST00000511774 NBPF10Q6P3W6 841 aaKnown RBP25.67■■□□□ 1.7
HMGCS1-206ENST00000511774 SLC51AQ86UW1 340 aa25.67■■□□□ 1.7
HMGCS1-206ENST00000511774 SYNE4Q8N205 404 aa25.67■■□□□ 1.7
HMGCS1-206ENST00000511774 NBPF15Q8N660 670 aa25.67■■□□□ 1.7
HMGCS1-206ENST00000511774 FAM177BA6PVY3 158 aa25.66■■□□□ 1.7
HMGCS1-206ENST00000511774 NPM2Q86SE8 214 aaKnown RBP25.66■■□□□ 1.7
HMGCS1-206ENST00000511774 PNMA8AQ86V59 439 aaPredicted RBP25.64■■□□□ 1.7
HMGCS1-206ENST00000511774 RTKN2Q8IZC4 609 aa25.64■■□□□ 1.7
HMGCS1-206ENST00000511774 PCGF6Q9BYE7 350 aa25.64■■□□□ 1.7
HMGCS1-206ENST00000511774 NIP7Q9Y221 180 aaKnown RBP eCLIP25.64■■□□□ 1.7
HMGCS1-206ENST00000511774 HLFQ16534 295 aa25.63■■□□□ 1.69
HMGCS1-206ENST00000511774 GPC2Q8N158 579 aa25.63■■□□□ 1.69
HMGCS1-206ENST00000511774 DDX21Q9NR30 783 aaKnown RBP eCLIP25.63■■□□□ 1.69
HMGCS1-206ENST00000511774 ABT1Q9ULW3 272 aaKnown RBP25.63■■□□□ 1.69
HMGCS1-206ENST00000511774 ABCC12Q96J65 1359 aa25.62■■□□□ 1.69
HMGCS1-206ENST00000511774 TRPM7Q96QT4 1865 aa25.62■■□□□ 1.69
HMGCS1-206ENST00000511774 MAP2K1Q02750 393 aaPredicted RBP25.61■■□□□ 1.69
HMGCS1-206ENST00000511774 TPTE2Q6XPS3 522 aa25.61■■□□□ 1.69
HMGCS1-206ENST00000511774 CNGB1Q14028 1251 aaPredicted RBP25.6■■□□□ 1.69
HMGCS1-206ENST00000511774 ZNF652Q9Y2D9 606 aa25.6■■□□□ 1.69
HMGCS1-206ENST00000511774 PRKAR2BP31323 418 aa25.59■■□□□ 1.69
HMGCS1-206ENST00000511774 EPS15P42566 896 aa25.59■■□□□ 1.69
HMGCS1-206ENST00000511774 RSPH6AQ9H0K4 717 aa25.59■■□□□ 1.69
HMGCS1-206ENST00000511774 SNRPA1P09661 255 aaKnown RBP25.58■■□□□ 1.69
HMGCS1-206ENST00000511774 SCNN1DP51172 638 aa25.58■■□□□ 1.69
HMGCS1-206ENST00000511774 CST9Q5W186 159 aa25.58■■□□□ 1.69
HMGCS1-206ENST00000511774 CYP4F22Q6NT55 531 aa25.58■■□□□ 1.69
HMGCS1-206ENST00000511774 CAPNS2Q96L46 248 aa25.58■■□□□ 1.69
HMGCS1-206ENST00000511774 PSMD1Q99460 953 aa25.58■■□□□ 1.69
HMGCS1-206ENST00000511774 GJA3Q9Y6H8 435 aa25.58■■□□□ 1.69
HMGCS1-206ENST00000511774 TRAF5O00463 557 aa25.57■■□□□ 1.68
HMGCS1-206ENST00000511774 CRY2Q49AN0 593 aa25.57■■□□□ 1.68
HMGCS1-206ENST00000511774 MCM10Q7L590 875 aa25.57■■□□□ 1.68
HMGCS1-206ENST00000511774 TSKSQ9UJT2 592 aa25.57■■□□□ 1.68
HMGCS1-206ENST00000511774 NUP98P52948 1817 aa25.57■■□□□ 1.68
HMGCS1-206ENST00000511774 ALDH1B1P30837 517 aa25.56■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms