RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 FUCA2Q9BTY2 467 aa11.12□□□□□ -0.63
PDGFRA-208ENST00000509490 ZSWIM6Q9HCJ5 1215 aa11.12□□□□□ -0.63
PDGFRA-208ENST00000509490 RGPD2P0DJD1 1756 aa11.12□□□□□ -0.63
PDGFRA-208ENST00000509490 RFX7Q2KHR2 1363 aa11.12□□□□□ -0.63
PDGFRA-208ENST00000509490 TSHZ3Q63HK5 1081 aa11.12□□□□□ -0.63
PDGFRA-208ENST00000509490 SURF6O75683 361 aaKnown RBP11.11□□□□□ -0.63
PDGFRA-208ENST00000509490 AMOTQ4VCS5 1084 aa11.11□□□□□ -0.63
PDGFRA-208ENST00000509490 RUFY3Q7L099 469 aa11.11□□□□□ -0.63
PDGFRA-208ENST00000509490 MTERF4Q7Z6M4 381 aaKnown RBP11.11□□□□□ -0.63
PDGFRA-208ENST00000509490 TICAM2Q86XR7 235 aa11.11□□□□□ -0.63
PDGFRA-208ENST00000509490 KCNH5Q8NCM2 988 aa11.11□□□□□ -0.63
PDGFRA-208ENST00000509490 HIP1O00291 1037 aa11.11□□□□□ -0.63
PDGFRA-208ENST00000509490 PHAXQ9H814 394 aaKnown RBP11.11□□□□□ -0.63
PDGFRA-208ENST00000509490 HYPKQ9NX55 129 aa11.11□□□□□ -0.63
PDGFRA-208ENST00000509490 F13A1P00488 732 aa11.1□□□□□ -0.63
PDGFRA-208ENST00000509490 TSGA10IPQ3SY00 556 aa11.1□□□□□ -0.63
PDGFRA-208ENST00000509490 DYNC1I1O14576 645 aa11.1□□□□□ -0.63
PDGFRA-208ENST00000509490 SRGAP3O43295 1099 aa11.1□□□□□ -0.63
PDGFRA-208ENST00000509490 STX6O43752 255 aa11.1□□□□□ -0.63
PDGFRA-208ENST00000509490 AK2P54819 239 aa11.1□□□□□ -0.63
PDGFRA-208ENST00000509490 NECTIN1Q15223 517 aa11.1□□□□□ -0.63
PDGFRA-208ENST00000509490 DBF4Q9UBU7 674 aaPredicted RBP11.1□□□□□ -0.63
PDGFRA-208ENST00000509490 TCHHQ07283 1943 aa11.1□□□□□ -0.63
PDGFRA-208ENST00000509490 ELP1O95163 1332 aa11.1□□□□□ -0.63
PDGFRA-208ENST00000509490 ECHDC1Q9NTX5 307 aa11.1□□□□□ -0.63
PDGFRA-208ENST00000509490 KIF1AQ12756 1690 aa11.09□□□□□ -0.63
PDGFRA-208ENST00000509490 NBPF7P0C2Y1 421 aaPredicted RBP11.09□□□□□ -0.63
PDGFRA-208ENST00000509490 SASS6Q6UVJ0 657 aa11.09□□□□□ -0.63
PDGFRA-208ENST00000509490 RASEFQ8IZ41 740 aa11.09□□□□□ -0.63
PDGFRA-208ENST00000509490 EVI5LQ96CN4 794 aa11.09□□□□□ -0.63
PDGFRA-208ENST00000509490 UPF3BQ9BZI7 483 aaKnown RBP11.09□□□□□ -0.63
PDGFRA-208ENST00000509490 GADD45BO75293 160 aaPredicted RBP11.09□□□□□ -0.63
PDGFRA-208ENST00000509490 SYT1P21579 422 aa11.09□□□□□ -0.63
PDGFRA-208ENST00000509490 NUTM1Q86Y26 1132 aa11.09□□□□□ -0.63
PDGFRA-208ENST00000509490 IL1RAPL2Q9NP60 686 aa11.09□□□□□ -0.63
PDGFRA-208ENST00000509490 SPTLC3Q9NUV7 552 aa11.09□□□□□ -0.63
PDGFRA-208ENST00000509490 SCN11AQ9UI33 1791 aa11.09□□□□□ -0.63
PDGFRA-208ENST00000509490 TMEM94Q12767 1356 aa11.08□□□□□ -0.64
PDGFRA-208ENST00000509490 KSR2Q6VAB6 950 aa11.08□□□□□ -0.64
PDGFRA-208ENST00000509490 GPATCH3Q96I76 525 aa11.08□□□□□ -0.64
PDGFRA-208ENST00000509490 MED23Q9ULK4 1368 aa11.08□□□□□ -0.64
PDGFRA-208ENST00000509490 GTF2F1P35269 517 aaKnown RBP eCLIP11.08□□□□□ -0.64
PDGFRA-208ENST00000509490 ABTB2Q8N961 1025 aa11.08□□□□□ -0.64
PDGFRA-208ENST00000509490 CHPF2Q9P2E5 772 aa11.08□□□□□ -0.64
PDGFRA-208ENST00000509490 PHF8Q9UPP1 1060 aa11.08□□□□□ -0.64
PDGFRA-208ENST00000509490 MTMR6Q9Y217 621 aa11.08□□□□□ -0.64
PDGFRA-208ENST00000509490 NUTM2FA1L443 756 aa11.07□□□□□ -0.64
PDGFRA-208ENST00000509490 PI4KAP2A4QPH2 592 aa11.07□□□□□ -0.64
PDGFRA-208ENST00000509490 TPM3P06753 285 aa11.07□□□□□ -0.64
PDGFRA-208ENST00000509490 KCNA6P17658 529 aa11.07□□□□□ -0.64
PDGFRA-208ENST00000509490 PLEKHO1Q53GL0 409 aaPredicted RBP11.07□□□□□ -0.64
PDGFRA-208ENST00000509490 NBPF6Q5VWK0 638 aa11.07□□□□□ -0.64
PDGFRA-208ENST00000509490 CLASRPQ8N2M8 674 aaKnown RBP11.07□□□□□ -0.64
PDGFRA-208ENST00000509490 PI4KAP1Q8N8J0 262 aa11.07□□□□□ -0.64
PDGFRA-208ENST00000509490 PIBF1Q8WXW3 757 aa11.07□□□□□ -0.64
PDGFRA-208ENST00000509490 MAP4K1Q92918 833 aa11.07□□□□□ -0.64
PDGFRA-208ENST00000509490 CHAMP1Q96JM3 812 aa11.07□□□□□ -0.64
PDGFRA-208ENST00000509490 NBPF4Q96M43 638 aa11.07□□□□□ -0.64
PDGFRA-208ENST00000509490 USP25Q9UHP3 1055 aa11.07□□□□□ -0.64
PDGFRA-208ENST00000509490 PXDNQ92626 1479 aa11.07□□□□□ -0.64
PDGFRA-208ENST00000509490 NPHP4O75161 1426 aaPredicted RBP11.07□□□□□ -0.64
PDGFRA-208ENST00000509490 PLCB2Q00722 1185 aa11.07□□□□□ -0.64
PDGFRA-208ENST00000509490 RNMTO43148 476 aaKnown RBP11.07□□□□□ -0.64
PDGFRA-208ENST00000509490 KIAA2012Q0VF49 1180 aa11.07□□□□□ -0.64
PDGFRA-208ENST00000509490 PRIMPOLQ96LW4 560 aa11.07□□□□□ -0.64
PDGFRA-208ENST00000509490 SMC3Q9UQE7 1217 aa11.07□□□□□ -0.64
PDGFRA-208ENST00000509490 GIGYF1O75420 1035 aaPredicted RBP11.06□□□□□ -0.64
PDGFRA-208ENST00000509490 ST3GAL1Q11201 340 aa11.06□□□□□ -0.64
PDGFRA-208ENST00000509490 LINS1Q8NG48 757 aa11.06□□□□□ -0.64
PDGFRA-208ENST00000509490 PARP4Q9UKK3 1724 aaKnown RBP11.06□□□□□ -0.64
PDGFRA-208ENST00000509490 RBM43Q6ZSC3 357 aaKnown RBP11.06□□□□□ -0.64
PDGFRA-208ENST00000509490 C5P01031 1676 aa11.06□□□□□ -0.64
PDGFRA-208ENST00000509490 ANKRD1Q15327 319 aa11.05□□□□□ -0.64
PDGFRA-208ENST00000509490 USPL1Q5W0Q7 1092 aa11.05□□□□□ -0.64
PDGFRA-208ENST00000509490 LGR6Q9HBX8 967 aa11.05□□□□□ -0.64
PDGFRA-208ENST00000509490 DIAPH3Q9NSV4 1193 aa11.05□□□□□ -0.64
PDGFRA-208ENST00000509490 CYP46A1Q9Y6A2 500 aa11.05□□□□□ -0.64
PDGFRA-208ENST00000509490 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.05□□□□□ -0.64
PDGFRA-208ENST00000509490 ALS2Q96Q42 1657 aa11.05□□□□□ -0.64
PDGFRA-208ENST00000509490 SOX12O15370 315 aa11.05□□□□□ -0.64
PDGFRA-208ENST00000509490 KDM4AO75164 1064 aa11.05□□□□□ -0.64
PDGFRA-208ENST00000509490 PSMA5P28066 241 aa11.05□□□□□ -0.64
PDGFRA-208ENST00000509490 PDRG1Q9NUG6 133 aa11.05□□□□□ -0.64
PDGFRA-208ENST00000509490 HMG20BQ9P0W2 317 aa11.05□□□□□ -0.64
PDGFRA-208ENST00000509490 HMGN5P82970 282 aaKnown RBP11.04□□□□□ -0.64
PDGFRA-208ENST00000509490 ARHGEF25Q86VW2 580 aa11.04□□□□□ -0.64
PDGFRA-208ENST00000509490 CNPY2Q9Y2B0 182 aa11.04□□□□□ -0.64
PDGFRA-208ENST00000509490 LAMB4A4D0S4 1761 aa11.04□□□□□ -0.64
PDGFRA-208ENST00000509490 BTBD11A6QL63 1104 aa11.04□□□□□ -0.64
PDGFRA-208ENST00000509490 PDCP20941 246 aa11.04□□□□□ -0.64
PDGFRA-208ENST00000509490 PKD1L3Q7Z443 1732 aa11.04□□□□□ -0.64
PDGFRA-208ENST00000509490 GLI3P10071 1580 aa11.04□□□□□ -0.64
PDGFRA-208ENST00000509490 XPCQ01831 940 aaPredicted RBP11.04□□□□□ -0.64
PDGFRA-208ENST00000509490 PTH1RQ03431 593 aa11.04□□□□□ -0.64
PDGFRA-208ENST00000509490 MYRIPQ8NFW9 859 aa11.04□□□□□ -0.64
PDGFRA-208ENST00000509490 KAZALD1Q96I82 304 aa11.04□□□□□ -0.64
PDGFRA-208ENST00000509490 DDX21Q9NR30 783 aaKnown RBP eCLIP11.04□□□□□ -0.64
PDGFRA-208ENST00000509490 CASTP20810 708 aaKnown RBP11.03□□□□□ -0.64
PDGFRA-208ENST00000509490 GJB2P29033 226 aa11.03□□□□□ -0.64
PDGFRA-208ENST00000509490 CWC27Q6UX04 472 aaKnown RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms