RNA–Protein interactions for RNA: ENST00000508546.5

NEDD9-211, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5

Gene NEDD9, Length 581 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-211ENST00000508546 SOX10P56693 466 aa12.78□□□□□ -0.36
NEDD9-211ENST00000508546 BICDL1Q6ZP65 573 aa12.78□□□□□ -0.36
NEDD9-211ENST00000508546 ZNF622Q969S3 477 aaKnown RBP eCLIP12.78□□□□□ -0.36
NEDD9-211ENST00000508546 CAPNS2Q96L46 248 aa12.78□□□□□ -0.36
NEDD9-211ENST00000508546 BEGAINQ9BUH8 593 aa12.78□□□□□ -0.36
NEDD9-211ENST00000508546 BCORQ6W2J9 1755 aa12.78□□□□□ -0.36
NEDD9-211ENST00000508546 EIF4G2P78344 907 aaKnown RBP eCLIP12.77□□□□□ -0.37
NEDD9-211ENST00000508546 TBC1D9BQ66K14 1250 aa12.77□□□□□ -0.37
NEDD9-211ENST00000508546 MAP1SQ66K74 1059 aaPredicted RBP12.77□□□□□ -0.37
NEDD9-211ENST00000508546 PRR5LQ6MZQ0 368 aa12.77□□□□□ -0.37
NEDD9-211ENST00000508546 TAOK3Q9H2K8 898 aa12.77□□□□□ -0.37
NEDD9-211ENST00000508546 ZNF219Q9P2Y4 722 aaPredicted RBP12.77□□□□□ -0.37
NEDD9-211ENST00000508546 KNSTRNQ9Y448 316 aa12.77□□□□□ -0.37
NEDD9-211ENST00000508546 TRPM7Q96QT4 1865 aa12.76□□□□□ -0.37
NEDD9-211ENST00000508546 GRM1Q13255 1194 aa12.76□□□□□ -0.37
NEDD9-211ENST00000508546 DGKZQ13574 1117 aa12.76□□□□□ -0.37
NEDD9-211ENST00000508546 MTHFSDQ2M296 383 aaKnown RBP12.76□□□□□ -0.37
NEDD9-211ENST00000508546 SOGA3Q5TF21 947 aa12.76□□□□□ -0.37
NEDD9-211ENST00000508546 CYP4F22Q6NT55 531 aa12.76□□□□□ -0.37
NEDD9-211ENST00000508546 PAXIP1Q6ZW49 1069 aaPredicted RBP12.76□□□□□ -0.37
NEDD9-211ENST00000508546 TTC5Q8N0Z6 440 aa12.76□□□□□ -0.37
NEDD9-211ENST00000508546 CNKSR1Q969H4 720 aa12.76□□□□□ -0.37
NEDD9-211ENST00000508546 TEX13AQ9BXU3 409 aaPredicted RBP12.76□□□□□ -0.37
NEDD9-211ENST00000508546 ZNF541Q9H0D2 1346 aa12.76□□□□□ -0.37
NEDD9-211ENST00000508546 CLSPNQ9HAW4 1339 aa12.76□□□□□ -0.37
NEDD9-211ENST00000508546 HMOX1P09601 288 aa12.75□□□□□ -0.37
NEDD9-211ENST00000508546 HSPA5P11021 654 aaKnown RBP12.75□□□□□ -0.37
NEDD9-211ENST00000508546 STYK1Q6J9G0 422 aa12.75□□□□□ -0.37
NEDD9-211ENST00000508546 HEG1Q9ULI3 1381 aa12.75□□□□□ -0.37
NEDD9-211ENST00000508546 SRGNP10124 158 aa12.74□□□□□ -0.37
NEDD9-211ENST00000508546 IL6STP40189 918 aaPredicted RBP12.74□□□□□ -0.37
NEDD9-211ENST00000508546 AMER1Q5JTC6 1135 aaPredicted RBP12.74□□□□□ -0.37
NEDD9-211ENST00000508546 CNTROBQ8N137 903 aa12.74□□□□□ -0.37
NEDD9-211ENST00000508546 ZNF496Q96IT1 587 aaPredicted RBP12.74□□□□□ -0.37
NEDD9-211ENST00000508546 GPR101Q96P66 508 aaPredicted RBP12.74□□□□□ -0.37
NEDD9-211ENST00000508546 CLEC11AQ9Y240 323 aa12.74□□□□□ -0.37
NEDD9-211ENST00000508546 AOC2O75106 756 aa12.73□□□□□ -0.37
NEDD9-211ENST00000508546 EPHX2P34913 555 aa12.73□□□□□ -0.37
NEDD9-211ENST00000508546 FMR1Q06787 632 aaKnown RBP eCLIP12.73□□□□□ -0.37
NEDD9-211ENST00000508546 PRPF40BQ6NWY9 871 aaKnown RBP12.73□□□□□ -0.37
NEDD9-211ENST00000508546 ZNF790Q6PG37 636 aa12.73□□□□□ -0.37
NEDD9-211ENST00000508546 CNBD1Q8NA66 436 aa12.73□□□□□ -0.37
NEDD9-211ENST00000508546 MASTLQ96GX5 879 aa12.73□□□□□ -0.37
NEDD9-211ENST00000508546 SETDB2Q96T68 719 aa12.73□□□□□ -0.37
NEDD9-211ENST00000508546 DDX21Q9NR30 783 aaKnown RBP eCLIP12.73□□□□□ -0.37
NEDD9-211ENST00000508546 HACL1Q9UJ83 578 aa12.73□□□□□ -0.37
NEDD9-211ENST00000508546 TBC1D2BQ9UPU7 963 aa12.73□□□□□ -0.37
NEDD9-211ENST00000508546 RNF123Q5XPI4 1314 aa12.72□□□□□ -0.37
NEDD9-211ENST00000508546 CAMTA2O94983 1202 aa12.72□□□□□ -0.37
NEDD9-211ENST00000508546 ECE1P42892 770 aa12.72□□□□□ -0.37
NEDD9-211ENST00000508546 ST5P78524 1137 aa12.72□□□□□ -0.37
NEDD9-211ENST00000508546 CCDC24Q8N4L8 307 aa12.72□□□□□ -0.37
NEDD9-211ENST00000508546 DIAPH1O60610 1272 aaKnown RBP12.71□□□□□ -0.37
NEDD9-211ENST00000508546 TEFQ10587 303 aa12.71□□□□□ -0.37
NEDD9-211ENST00000508546 TRIM26Q12899 539 aaPredicted RBP12.71□□□□□ -0.37
NEDD9-211ENST00000508546 C7orf43Q8WVR3 580 aa12.71□□□□□ -0.37
NEDD9-211ENST00000508546 NPHP1O15259 732 aa12.7□□□□□ -0.38
NEDD9-211ENST00000508546 NPM2Q86SE8 214 aaKnown RBP12.7□□□□□ -0.38
NEDD9-211ENST00000508546 IL17REQ8NFR9 667 aa12.7□□□□□ -0.38
NEDD9-211ENST00000508546 FMNL2Q96PY5 1086 aa12.7□□□□□ -0.38
NEDD9-211ENST00000508546 ZNF330Q9Y3S2 320 aaPredicted RBP12.7□□□□□ -0.38
NEDD9-211ENST00000508546 GNAT3A8MTJ3 354 aa12.69□□□□□ -0.38
NEDD9-211ENST00000508546 CA12O43570 354 aa12.69□□□□□ -0.38
NEDD9-211ENST00000508546 A1BGP04217 495 aa12.69□□□□□ -0.38
NEDD9-211ENST00000508546 CCDC93Q567U6 631 aa12.69□□□□□ -0.38
NEDD9-211ENST00000508546 CLEC4GQ6UXB4 293 aa12.69□□□□□ -0.38
NEDD9-211ENST00000508546 GAS2L2Q8NHY3 880 aa12.69□□□□□ -0.38
NEDD9-211ENST00000508546 CEMIPQ8WUJ3 1361 aa12.69□□□□□ -0.38
NEDD9-211ENST00000508546 COL3A1P02461 1466 aaPredicted RBP12.68□□□□□ -0.38
NEDD9-211ENST00000508546 KLRG2A4D1S0 409 aaPredicted RBP12.68□□□□□ -0.38
NEDD9-211ENST00000508546 FKBP4Q02790 459 aaKnown RBP eCLIP12.68□□□□□ -0.38
NEDD9-211ENST00000508546 DZIP3Q86Y13 1208 aaKnown RBP12.68□□□□□ -0.38
NEDD9-211ENST00000508546 TLL2Q9Y6L7 1015 aa12.68□□□□□ -0.38
NEDD9-211ENST00000508546 NPR1P16066 1061 aa12.67□□□□□ -0.38
NEDD9-211ENST00000508546 MAP2K2P36507 400 aa12.67□□□□□ -0.38
NEDD9-211ENST00000508546 PNMA8AQ86V59 439 aaPredicted RBP12.67□□□□□ -0.38
NEDD9-211ENST00000508546 TRAF5O00463 557 aa12.66□□□□□ -0.38
NEDD9-211ENST00000508546 RGL2O15211 777 aa12.66□□□□□ -0.38
NEDD9-211ENST00000508546 BRPF1P55201 1214 aaPredicted RBP12.66□□□□□ -0.38
NEDD9-211ENST00000508546 CST9Q5W186 159 aa12.66□□□□□ -0.38
NEDD9-211ENST00000508546 NBPF5PQ86XG9 351 aaPredicted RBP12.66□□□□□ -0.38
NEDD9-211ENST00000508546 RTKN2Q8IZC4 609 aa12.66□□□□□ -0.38
NEDD9-211ENST00000508546 COL4A5P29400 1685 aa12.66□□□□□ -0.38
NEDD9-211ENST00000508546 FZD9O00144 591 aa12.65□□□□□ -0.38
NEDD9-211ENST00000508546 PER1O15534 1290 aaPredicted RBP12.65□□□□□ -0.38
NEDD9-211ENST00000508546 ZNF277Q9NRM2 450 aaPredicted RBP12.65□□□□□ -0.38
NEDD9-211ENST00000508546 ZNF652Q9Y2D9 606 aa12.65□□□□□ -0.38
NEDD9-211ENST00000508546 BTBD11A6QL63 1104 aa12.64□□□□□ -0.39
NEDD9-211ENST00000508546 CIAPIN1Q6FI81 312 aa12.64□□□□□ -0.39
NEDD9-211ENST00000508546 TPTE2Q6XPS3 522 aa12.64□□□□□ -0.39
NEDD9-211ENST00000508546 USP16Q9Y5T5 823 aa12.64□□□□□ -0.39
NEDD9-211ENST00000508546 NUP98P52948 1817 aa12.64□□□□□ -0.39
NEDD9-211ENST00000508546 SNED1Q8TER0 1413 aa12.63□□□□□ -0.39
NEDD9-211ENST00000508546 KCNQ3O43525 872 aa12.63□□□□□ -0.39
NEDD9-211ENST00000508546 ALDH1B1P30837 517 aa12.63□□□□□ -0.39
NEDD9-211ENST00000508546 IARSP41252 1262 aaKnown RBP12.63□□□□□ -0.39
NEDD9-211ENST00000508546 HABP4Q5JVS0 413 aaKnown RBP12.63□□□□□ -0.39
NEDD9-211ENST00000508546 GPC2Q8N158 579 aa12.63□□□□□ -0.39
NEDD9-211ENST00000508546 NPC1L1Q9UHC9 1359 aa12.63□□□□□ -0.39
NEDD9-211ENST00000508546 KIF7Q2M1P5 1343 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms