RNA–Protein interactions for RNA: ENST00000504663.1

TPM3-217, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-217ENST00000504663 MEIS3Q99687 375 aa13.18□□□□□ -0.3
TPM3-217ENST00000504663 RBM42Q9BTD8 480 aaKnown RBP13.18□□□□□ -0.3
TPM3-217ENST00000504663 C4AP0C0L4 1744 aa13.17□□□□□ -0.3
TPM3-217ENST00000504663 C4BP0C0L5 1744 aa13.17□□□□□ -0.3
TPM3-217ENST00000504663 MYL6BP14649 208 aa13.17□□□□□ -0.3
TPM3-217ENST00000504663 CCT4P50991 539 aaKnown RBP13.17□□□□□ -0.3
TPM3-217ENST00000504663 TTLL7Q6ZT98 887 aa13.17□□□□□ -0.3
TPM3-217ENST00000504663 COPS6Q7L5N1 327 aa13.17□□□□□ -0.3
TPM3-217ENST00000504663 KRT27Q7Z3Y8 459 aa13.17□□□□□ -0.3
TPM3-217ENST00000504663 SIRT2Q8IXJ6 389 aa13.17□□□□□ -0.3
TPM3-217ENST00000504663 DNAAF4Q8WXU2 420 aa13.17□□□□□ -0.3
TPM3-217ENST00000504663 CCDC136Q96JN2 1154 aa13.17□□□□□ -0.3
TPM3-217ENST00000504663 ZBTB1Q9Y2K1 713 aa13.17□□□□□ -0.3
TPM3-217ENST00000504663 NUP98P52948 1817 aa13.17□□□□□ -0.3
TPM3-217ENST00000504663 IGKV5-2P06315 115 aa13.16□□□□□ -0.3
TPM3-217ENST00000504663 INTS5Q6P9B9 1019 aaKnown RBP13.16□□□□□ -0.3
TPM3-217ENST00000504663 SMARCC1Q92922 1105 aaPredicted RBP13.16□□□□□ -0.3
TPM3-217ENST00000504663 TEX13AQ9BXU3 409 aaPredicted RBP13.16□□□□□ -0.3
TPM3-217ENST00000504663 C1orf115Q9H7X2 142 aa13.16□□□□□ -0.3
TPM3-217ENST00000504663 MAP3K2Q9Y2U5 619 aa13.16□□□□□ -0.3
TPM3-217ENST00000504663 UBR3Q6ZT12 1888 aa13.16□□□□□ -0.3
TPM3-217ENST00000504663 LINC00116Q8NCU8 138 aa13.15□□□□□ -0.3
TPM3-217ENST00000504663 TUBGCP6Q96RT7 1819 aa13.15□□□□□ -0.3
TPM3-217ENST00000504663 SLC4A10Q6U841 1118 aa13.14□□□□□ -0.31
TPM3-217ENST00000504663 METTL22Q9BUU2 404 aaPredicted RBP13.14□□□□□ -0.31
TPM3-217ENST00000504663 BCL11BQ9C0K0 894 aaPredicted RBP13.14□□□□□ -0.31
TPM3-217ENST00000504663 USP44Q9H0E7 712 aa13.14□□□□□ -0.31
TPM3-217ENST00000504663 UTYO14607 1347 aa13.13□□□□□ -0.31
TPM3-217ENST00000504663 STARD3NLO95772 234 aa13.13□□□□□ -0.31
TPM3-217ENST00000504663 RXRBP28702 533 aa13.13□□□□□ -0.31
TPM3-217ENST00000504663 AIMP1Q12904 312 aaKnown RBP13.13□□□□□ -0.31
TPM3-217ENST00000504663 HDAC1Q13547 482 aaPredicted RBP13.13□□□□□ -0.31
TPM3-217ENST00000504663 FAM196AQ6ZSG2 479 aa13.13□□□□□ -0.31
TPM3-217ENST00000504663 PLBD2Q8NHP8 589 aa13.13□□□□□ -0.31
TPM3-217ENST00000504663 COL24A1Q17RW2 1714 aa13.13□□□□□ -0.31
TPM3-217ENST00000504663 CNTNAP4Q9C0A0 1308 aa13.13□□□□□ -0.31
TPM3-217ENST00000504663 ALDH1L1O75891 902 aa13.12□□□□□ -0.31
TPM3-217ENST00000504663 ATP6V1AP38606 617 aa13.12□□□□□ -0.31
TPM3-217ENST00000504663 CRKLP46109 303 aaKnown RBP13.12□□□□□ -0.31
TPM3-217ENST00000504663 EIF5P55010 431 aaKnown RBP13.12□□□□□ -0.31
TPM3-217ENST00000504663 CWF19L2Q2TBE0 894 aaKnown RBP13.12□□□□□ -0.31
TPM3-217ENST00000504663 CEP85Q6P2H3 762 aa13.12□□□□□ -0.31
TPM3-217ENST00000504663 ANKRD13DQ6ZTN6 518 aa13.12□□□□□ -0.31
TPM3-217ENST00000504663 SRCIN1Q9C0H9 1055 aa13.12□□□□□ -0.31
TPM3-217ENST00000504663 ATF5Q9Y2D1 282 aaPredicted RBP13.12□□□□□ -0.31
TPM3-217ENST00000504663 NEURL1BA8MQ27 555 aa13.11□□□□□ -0.31
TPM3-217ENST00000504663 DDX58O95786 925 aaKnown RBP13.11□□□□□ -0.31
TPM3-217ENST00000504663 IL6STP40189 918 aaPredicted RBP13.11□□□□□ -0.31
TPM3-217ENST00000504663 KCNQ4P56696 695 aa13.11□□□□□ -0.31
TPM3-217ENST00000504663 CENPQQ7L2Z9 268 aaPredicted RBP13.11□□□□□ -0.31
TPM3-217ENST00000504663 AMIGO3Q86WK7 504 aa13.11□□□□□ -0.31
TPM3-217ENST00000504663 SKAP1Q86WV1 359 aa13.11□□□□□ -0.31
TPM3-217ENST00000504663 LINS1Q8NG48 757 aa13.11□□□□□ -0.31
TPM3-217ENST00000504663 CCDC87Q9NVE4 849 aa13.11□□□□□ -0.31
TPM3-217ENST00000504663 LAMB2P55268 1798 aa13.11□□□□□ -0.31
TPM3-217ENST00000504663 COL15A1P39059 1388 aa13.1□□□□□ -0.31
TPM3-217ENST00000504663 CASZ1Q86V15 1759 aa13.1□□□□□ -0.31
TPM3-217ENST00000504663 NBPF7P0C2Y1 421 aaPredicted RBP13.1□□□□□ -0.31
TPM3-217ENST00000504663 CASP7P55210 303 aa13.1□□□□□ -0.31
TPM3-217ENST00000504663 ANKRD44Q8N8A2 993 aa13.1□□□□□ -0.31
TPM3-217ENST00000504663 KAZALD1Q96I82 304 aa13.1□□□□□ -0.31
TPM3-217ENST00000504663 MYD88Q99836 296 aa13.1□□□□□ -0.31
TPM3-217ENST00000504663 ISCA1Q9BUE6 129 aa13.1□□□□□ -0.31
TPM3-217ENST00000504663 LRRC4BQ9NT99 713 aa13.1□□□□□ -0.31
TPM3-217ENST00000504663 MAP3K15Q6ZN16 1313 aa13.1□□□□□ -0.31
TPM3-217ENST00000504663 RIC3Q7Z5B4 369 aa13.09□□□□□ -0.31
TPM3-217ENST00000504663 SMC5Q8IY18 1101 aa13.09□□□□□ -0.31
TPM3-217ENST00000504663 DDX60Q8IY21 1712 aaKnown RBP13.08□□□□□ -0.32
TPM3-217ENST00000504663 TRIM37O94972 964 aa13.08□□□□□ -0.32
TPM3-217ENST00000504663 GCKRQ14397 625 aa13.08□□□□□ -0.32
TPM3-217ENST00000504663 HLFQ16534 295 aa13.08□□□□□ -0.32
TPM3-217ENST00000504663 RC3H1Q5TC82 1133 aaKnown RBP13.08□□□□□ -0.32
TPM3-217ENST00000504663 PROM2Q8N271 834 aa13.08□□□□□ -0.32
TPM3-217ENST00000504663 CHMP4BQ9H444 224 aaKnown RBP13.08□□□□□ -0.32
TPM3-217ENST00000504663 ZBTB3Q9H5J0 574 aa13.08□□□□□ -0.32
TPM3-217ENST00000504663 LRRFIP2Q9Y608 721 aaKnown RBP13.08□□□□□ -0.32
TPM3-217ENST00000504663 CAMTA2O94983 1202 aa13.07□□□□□ -0.32
TPM3-217ENST00000504663 GNAI3P08754 354 aa13.07□□□□□ -0.32
TPM3-217ENST00000504663 CCNL1Q9UK58 526 aaPredicted RBP13.07□□□□□ -0.32
TPM3-217ENST00000504663 GRM8O00222 908 aa13.06□□□□□ -0.32
TPM3-217ENST00000504663 GNAI2P04899 355 aa13.06□□□□□ -0.32
TPM3-217ENST00000504663 MTX1Q13505 466 aa13.06□□□□□ -0.32
TPM3-217ENST00000504663 GIGYF2Q6Y7W6 1299 aaKnown RBP13.06□□□□□ -0.32
TPM3-217ENST00000504663 ILDR1Q86SU0 546 aaPredicted RBP13.06□□□□□ -0.32
TPM3-217ENST00000504663 RPAP2Q8IXW5 612 aaPredicted RBP13.06□□□□□ -0.32
TPM3-217ENST00000504663 SUCLG2Q96I99 432 aa13.06□□□□□ -0.32
TPM3-217ENST00000504663 UBN2Q6ZU65 1347 aa13.06□□□□□ -0.32
TPM3-217ENST00000504663 MYH3P11055 1940 aa13.05□□□□□ -0.32
TPM3-217ENST00000504663 QSER1Q2KHR3 1735 aa13.05□□□□□ -0.32
TPM3-217ENST00000504663 PNMA6EA0A0J9YXQ4 647 aa13.05□□□□□ -0.32
TPM3-217ENST00000504663 ERVV-1B6SEH8 477 aa13.05□□□□□ -0.32
TPM3-217ENST00000504663 ATP5J2-PTCD1G3V325 749 aa13.05□□□□□ -0.32
TPM3-217ENST00000504663 H7C1W4 665 aa13.05□□□□□ -0.32
TPM3-217ENST00000504663 UBTFL1P0CB47 393 aaPredicted RBP13.05□□□□□ -0.32
TPM3-217ENST00000504663 TRIM28Q13263 835 aaKnown RBP13.05□□□□□ -0.32
TPM3-217ENST00000504663 TCIRG1Q13488 830 aa13.05□□□□□ -0.32
TPM3-217ENST00000504663 POLA2Q14181 598 aa13.05□□□□□ -0.32
TPM3-217ENST00000504663 EPHA10Q5JZY3 1008 aa13.05□□□□□ -0.32
TPM3-217ENST00000504663 SMIM5Q71RC9 77 aa13.05□□□□□ -0.32
TPM3-217ENST00000504663 DZIP3Q86Y13 1208 aaKnown RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms