RNA–Protein interactions for RNA: ENST00000498751.1

SYNE1-231, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 578 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-231ENST00000498751 NLRP2Q9NX02 1062 aa9.58□□□□□ -0.88
SYNE1-231ENST00000498751 COL15A1P39059 1388 aa9.58□□□□□ -0.88
SYNE1-231ENST00000498751 LAMB4A4D0S4 1761 aa9.58□□□□□ -0.88
SYNE1-231ENST00000498751 UTYO14607 1347 aa9.57□□□□□ -0.88
SYNE1-231ENST00000498751 FKBP5Q13451 457 aaPredicted RBP9.57□□□□□ -0.88
SYNE1-231ENST00000498751 MTX1Q13505 466 aa9.57□□□□□ -0.88
SYNE1-231ENST00000498751 MEIS3Q99687 375 aa9.57□□□□□ -0.88
SYNE1-231ENST00000498751 TMEM121BQ9BXQ6 578 aaPredicted RBP9.57□□□□□ -0.88
SYNE1-231ENST00000498751 HYPKQ9NX55 129 aa9.57□□□□□ -0.88
SYNE1-231ENST00000498751 HDAC5Q9UQL6 1122 aa9.57□□□□□ -0.88
SYNE1-231ENST00000498751 COL16A1Q07092 1604 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-231ENST00000498751 ADCY9O60503 1353 aa9.56□□□□□ -0.88
SYNE1-231ENST00000498751 G3V3G9 751 aa9.56□□□□□ -0.88
SYNE1-231ENST00000498751 ALDH1L1O75891 902 aa9.56□□□□□ -0.88
SYNE1-231ENST00000498751 ECM2O94769 699 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-231ENST00000498751 GNAI2P04899 355 aa9.56□□□□□ -0.88
SYNE1-231ENST00000498751 ATP8B2P98198 1209 aa9.56□□□□□ -0.88
SYNE1-231ENST00000498751 PDIA6Q15084 440 aa9.56□□□□□ -0.88
SYNE1-231ENST00000498751 BEND3Q5T5X7 828 aa9.56□□□□□ -0.88
SYNE1-231ENST00000498751 LRP10Q7Z4F1 713 aa9.56□□□□□ -0.88
SYNE1-231ENST00000498751 DNAAF4Q8WXU2 420 aa9.56□□□□□ -0.88
SYNE1-231ENST00000498751 USP44Q9H0E7 712 aa9.56□□□□□ -0.88
SYNE1-231ENST00000498751 KCNQ3O43525 872 aa9.55□□□□□ -0.88
SYNE1-231ENST00000498751 CSB-PGBD3P0DP91 1061 aa9.55□□□□□ -0.88
SYNE1-231ENST00000498751 IL2RBP14784 551 aa9.55□□□□□ -0.88
SYNE1-231ENST00000498751 CHRNA2Q15822 529 aa9.55□□□□□ -0.88
SYNE1-231ENST00000498751 ZCRB1Q8TBF4 217 aaKnown RBP9.55□□□□□ -0.88
SYNE1-231ENST00000498751 SSH3Q8TE77 659 aa9.55□□□□□ -0.88
SYNE1-231ENST00000498751 SRCIN1Q9C0H9 1055 aa9.55□□□□□ -0.88
SYNE1-231ENST00000498751 BCL11BQ9C0K0 894 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-231ENST00000498751 SALL3Q9BXA9 1300 aa9.55□□□□□ -0.88
SYNE1-231ENST00000498751 C5P01031 1676 aa9.55□□□□□ -0.88
SYNE1-231ENST00000498751 ZBTB7CA1YPR0 619 aa9.54□□□□□ -0.88
SYNE1-231ENST00000498751 F6X3S4 739 aa9.54□□□□□ -0.88
SYNE1-231ENST00000498751 KSR2Q6VAB6 950 aa9.54□□□□□ -0.88
SYNE1-231ENST00000498751 CDAN1Q8IWY9 1227 aa9.54□□□□□ -0.88
SYNE1-231ENST00000498751 MARVELD3Q96A59 401 aa9.54□□□□□ -0.88
SYNE1-231ENST00000498751 PHAXQ9H814 394 aaKnown RBP9.54□□□□□ -0.88
SYNE1-231ENST00000498751 CHPF2Q9P2E5 772 aa9.54□□□□□ -0.88
SYNE1-231ENST00000498751 KCPQ6ZWJ8 1503 aa9.54□□□□□ -0.88
SYNE1-231ENST00000498751 RGL2O15211 777 aa9.53□□□□□ -0.88
SYNE1-231ENST00000498751 SNRPA1P09661 255 aaKnown RBP9.53□□□□□ -0.88
SYNE1-231ENST00000498751 ANKRD45Q5TZF3 282 aa9.53□□□□□ -0.88
SYNE1-231ENST00000498751 LINS1Q8NG48 757 aa9.53□□□□□ -0.88
SYNE1-231ENST00000498751 TBC1D32Q96NH3 1257 aa9.53□□□□□ -0.88
SYNE1-231ENST00000498751 FMNL2Q96PY5 1086 aa9.53□□□□□ -0.88
SYNE1-231ENST00000498751 LNPKQ9C0E8 428 aa9.53□□□□□ -0.88
SYNE1-231ENST00000498751 NOP58Q9Y2X3 529 aaKnown RBP9.53□□□□□ -0.88
SYNE1-231ENST00000498751 WNK3Q9BYP7 1800 aa9.53□□□□□ -0.88
SYNE1-231ENST00000498751 AOX1Q06278 1338 aa9.53□□□□□ -0.88
SYNE1-231ENST00000498751 CICQ96RK0 1608 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-231ENST00000498751 PI4KAP2A4QPH2 592 aa9.52□□□□□ -0.89
SYNE1-231ENST00000498751 RAB11FIP3O75154 756 aa9.52□□□□□ -0.89
SYNE1-231ENST00000498751 DDX58O95786 925 aaKnown RBP9.52□□□□□ -0.89
SYNE1-231ENST00000498751 RBM25P49756 843 aaKnown RBP9.52□□□□□ -0.89
SYNE1-231ENST00000498751 TOM1L2Q6ZVM7 507 aa9.52□□□□□ -0.89
SYNE1-231ENST00000498751 NRAPQ86VF7 1730 aa9.52□□□□□ -0.89
SYNE1-231ENST00000498751 PLEKHM2Q8IWE5 1019 aa9.52□□□□□ -0.89
SYNE1-231ENST00000498751 MICALL2Q8IY33 904 aa9.52□□□□□ -0.89
SYNE1-231ENST00000498751 VSIG10Q8N0Z9 540 aa9.52□□□□□ -0.89
SYNE1-231ENST00000498751 PI4KAP1Q8N8J0 262 aa9.52□□□□□ -0.89
SYNE1-231ENST00000498751 NFATC2IPQ8NCF5 419 aa9.52□□□□□ -0.89
SYNE1-231ENST00000498751 CDCA7Q9BWT1 371 aaPredicted RBP9.52□□□□□ -0.89
SYNE1-231ENST00000498751 C1orf115Q9H7X2 142 aa9.52□□□□□ -0.89
SYNE1-231ENST00000498751 UPF2Q9HAU5 1272 aaKnown RBP9.52□□□□□ -0.89
SYNE1-231ENST00000498751 NWD2Q9ULI1 1742 aa9.52□□□□□ -0.89
SYNE1-231ENST00000498751 THRAP3Q9Y2W1 955 aaKnown RBP9.52□□□□□ -0.89
SYNE1-231ENST00000498751 EPB41L2O43491 1005 aaKnown RBP9.51□□□□□ -0.89
SYNE1-231ENST00000498751 UBTFL1P0CB47 393 aaPredicted RBP9.51□□□□□ -0.89
SYNE1-231ENST00000498751 IL27Q8NEV9 243 aa9.51□□□□□ -0.89
SYNE1-231ENST00000498751 ZNF496Q96IT1 587 aaPredicted RBP9.51□□□□□ -0.89
SYNE1-231ENST00000498751 STAP2Q9UGK3 403 aa9.51□□□□□ -0.89
SYNE1-231ENST00000498751 STK24Q9Y6E0 443 aa9.51□□□□□ -0.89
SYNE1-231ENST00000498751 TOGARAM1Q9Y4F4 1720 aa9.51□□□□□ -0.89
SYNE1-231ENST00000498751 CABP4P57796 275 aa9.5□□□□□ -0.89
SYNE1-231ENST00000498751 HSP90AB4PQ58FF6 505 aa9.5□□□□□ -0.89
SYNE1-231ENST00000498751 LARP1Q6PKG0 1096 aaKnown RBP9.5□□□□□ -0.89
SYNE1-231ENST00000498751 SLC4A10Q6U841 1118 aa9.5□□□□□ -0.89
SYNE1-231ENST00000498751 TMEM92Q6UXU6 159 aa9.5□□□□□ -0.89
SYNE1-231ENST00000498751 TTC5Q8N0Z6 440 aa9.5□□□□□ -0.89
SYNE1-231ENST00000498751 ANP32EQ9BTT0 268 aa9.5□□□□□ -0.89
SYNE1-231ENST00000498751 SLIT2O94813 1529 aa9.5□□□□□ -0.89
SYNE1-231ENST00000498751 TUBGCP6Q96RT7 1819 aa9.49□□□□□ -0.89
SYNE1-231ENST00000498751 HOXB3P14651 431 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-231ENST00000498751 EIF2S2P20042 333 aaKnown RBP9.49□□□□□ -0.89
SYNE1-231ENST00000498751 TTC22Q5TAA0 569 aa9.49□□□□□ -0.89
SYNE1-231ENST00000498751 FBXO22Q8NEZ5 403 aa9.49□□□□□ -0.89
SYNE1-231ENST00000498751 METTL22Q9BUU2 404 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-231ENST00000498751 TAOK2Q9UL54 1235 aa9.49□□□□□ -0.89
SYNE1-231ENST00000498751 USP42Q9H9J4 1324 aaKnown RBP9.49□□□□□ -0.89
SYNE1-231ENST00000498751 PHLPP1O60346 1717 aa9.48□□□□□ -0.89
SYNE1-231ENST00000498751 PNMA6EA0A0J9YXQ4 647 aa9.48□□□□□ -0.89
SYNE1-231ENST00000498751 STK25O00506 426 aa9.48□□□□□ -0.89
SYNE1-231ENST00000498751 GSPT1P15170 499 aaKnown RBP9.48□□□□□ -0.89
SYNE1-231ENST00000498751 TEX13AQ9BXU3 409 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-231ENST00000498751 LRRCC1Q9C099 1032 aa9.48□□□□□ -0.89
SYNE1-231ENST00000498751 LRRFIP2Q9Y608 721 aaKnown RBP9.48□□□□□ -0.89
SYNE1-231ENST00000498751 BCL9O00512 1426 aa9.48□□□□□ -0.89
SYNE1-231ENST00000498751 GRM8O00222 908 aa9.47□□□□□ -0.89
SYNE1-231ENST00000498751 TOM1O60784 492 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms