RNA–Protein interactions for RNA: ENST00000498725.5

CCDC171-209, Transcript of coiled-coil domain containing 171, humanhuman

TSL 3

Gene CCDC171, Length 498 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-209ENST00000498725 PIP4K2AP48426 406 aaPredicted RBP12.38□□□□□ -0.43
CCDC171-209ENST00000498725 CTCFP49711 727 aaPredicted RBP12.38□□□□□ -0.43
CCDC171-209ENST00000498725 LBX1P52954 281 aa12.38□□□□□ -0.43
CCDC171-209ENST00000498725 EIF4G2P78344 907 aaKnown RBP eCLIP12.38□□□□□ -0.43
CCDC171-209ENST00000498725 NPM2Q86SE8 214 aaKnown RBP12.38□□□□□ -0.43
CCDC171-209ENST00000498725 CNBD1Q8NA66 436 aa12.38□□□□□ -0.43
CCDC171-209ENST00000498725 ZNF496Q96IT1 587 aaPredicted RBP12.38□□□□□ -0.43
CCDC171-209ENST00000498725 SETDB2Q96T68 719 aa12.38□□□□□ -0.43
CCDC171-209ENST00000498725 ST5P78524 1137 aa12.37□□□□□ -0.43
CCDC171-209ENST00000498725 TEFQ10587 303 aa12.37□□□□□ -0.43
CCDC171-209ENST00000498725 LDHDQ86WU2 507 aa12.37□□□□□ -0.43
CCDC171-209ENST00000498725 CNKSR1Q969H4 720 aa12.37□□□□□ -0.43
CCDC171-209ENST00000498725 TAF1DQ9H5J8 278 aaPredicted RBP12.37□□□□□ -0.43
CCDC171-209ENST00000498725 PRDM10Q9NQV6 1147 aa12.37□□□□□ -0.43
CCDC171-209ENST00000498725 PDZRN3Q9UPQ7 1066 aa12.37□□□□□ -0.43
CCDC171-209ENST00000498725 LTBP3Q9NS15 1303 aa12.37□□□□□ -0.43
CCDC171-209ENST00000498725 HEG1Q9ULI3 1381 aa12.36□□□□□ -0.43
CCDC171-209ENST00000498725 IQCA1LA6NCM1 817 aa12.36□□□□□ -0.43
CCDC171-209ENST00000498725 TMEM88BA6NKF7 163 aa12.36□□□□□ -0.43
CCDC171-209ENST00000498725 FAM177BA6PVY3 158 aa12.36□□□□□ -0.43
CCDC171-209ENST00000498725 STYK1Q6J9G0 422 aa12.36□□□□□ -0.43
CCDC171-209ENST00000498725 OLFM4Q6UX06 510 aa12.36□□□□□ -0.43
CCDC171-209ENST00000498725 PASKQ96RG2 1323 aa12.36□□□□□ -0.43
CCDC171-209ENST00000498725 ZNF541Q9H0D2 1346 aa12.36□□□□□ -0.43
CCDC171-209ENST00000498725 DIAPH1O60610 1272 aaKnown RBP12.35□□□□□ -0.43
CCDC171-209ENST00000498725 SRGNP10124 158 aa12.35□□□□□ -0.43
CCDC171-209ENST00000498725 MASTLQ96GX5 879 aa12.35□□□□□ -0.43
CCDC171-209ENST00000498725 ZNF277Q9NRM2 450 aaPredicted RBP12.35□□□□□ -0.43
CCDC171-209ENST00000498725 U2SURPO15042 1029 aaKnown RBP12.34□□□□□ -0.43
CCDC171-209ENST00000498725 CAMTA2O94983 1202 aa12.34□□□□□ -0.43
CCDC171-209ENST00000498725 ITGBL1O95965 494 aaPredicted RBP12.34□□□□□ -0.43
CCDC171-209ENST00000498725 IL6STP40189 918 aaPredicted RBP12.34□□□□□ -0.43
CCDC171-209ENST00000498725 GRM1Q13255 1194 aa12.34□□□□□ -0.43
CCDC171-209ENST00000498725 FAM161AQ3B820 660 aa12.34□□□□□ -0.43
CCDC171-209ENST00000498725 SOGA3Q5TF21 947 aa12.34□□□□□ -0.43
CCDC171-209ENST00000498725 MAP1SQ66K74 1059 aaPredicted RBP12.34□□□□□ -0.43
CCDC171-209ENST00000498725 ZNF790Q6PG37 636 aa12.34□□□□□ -0.43
CCDC171-209ENST00000498725 POTEHQ6S545 545 aa12.34□□□□□ -0.43
CCDC171-209ENST00000498725 DZIP3Q86Y13 1208 aaKnown RBP12.34□□□□□ -0.43
CCDC171-209ENST00000498725 PCGF6Q9BYE7 350 aa12.34□□□□□ -0.43
CCDC171-209ENST00000498725 HACL1Q9UJ83 578 aa12.34□□□□□ -0.43
CCDC171-209ENST00000498725 RNF123Q5XPI4 1314 aa12.34□□□□□ -0.43
CCDC171-209ENST00000498725 ADAMTSL1Q8N6G6 1762 aa12.33□□□□□ -0.44
CCDC171-209ENST00000498725 KCNQ3O43525 872 aa12.33□□□□□ -0.44
CCDC171-209ENST00000498725 EPHX2P34913 555 aa12.33□□□□□ -0.44
CCDC171-209ENST00000498725 DEFB115Q30KQ5 88 aa12.33□□□□□ -0.44
CCDC171-209ENST00000498725 CCDC93Q567U6 631 aa12.33□□□□□ -0.44
CCDC171-209ENST00000498725 CC2D1BQ5T0F9 858 aaKnown RBP12.33□□□□□ -0.44
CCDC171-209ENST00000498725 PAXIP1Q6ZW49 1069 aaPredicted RBP12.33□□□□□ -0.44
CCDC171-209ENST00000498725 NBPF5PQ86XG9 351 aaPredicted RBP12.33□□□□□ -0.44
CCDC171-209ENST00000498725 IL17REQ8NFR9 667 aa12.33□□□□□ -0.44
CCDC171-209ENST00000498725 TEX13AQ9BXU3 409 aaPredicted RBP12.33□□□□□ -0.44
CCDC171-209ENST00000498725 WBP1LQ9NX94 342 aa12.33□□□□□ -0.44
CCDC171-209ENST00000498725 ABT1Q9ULW3 272 aaKnown RBP12.33□□□□□ -0.44
CCDC171-209ENST00000498725 GNAT3A8MTJ3 354 aa12.32□□□□□ -0.44
CCDC171-209ENST00000498725 HSPA8P11142 646 aaKnown RBP12.32□□□□□ -0.44
CCDC171-209ENST00000498725 FKBP4Q02790 459 aaKnown RBP eCLIP12.32□□□□□ -0.44
CCDC171-209ENST00000498725 ABHD8Q96I13 439 aa12.32□□□□□ -0.44
CCDC171-209ENST00000498725 L3MBTL3Q96JM7 780 aaPredicted RBP12.32□□□□□ -0.44
CCDC171-209ENST00000498725 FMNL2Q96PY5 1086 aa12.32□□□□□ -0.44
CCDC171-209ENST00000498725 PRAMEF22A3QJZ6 481 aa12.31□□□□□ -0.44
CCDC171-209ENST00000498725 FMR1Q06787 632 aaKnown RBP eCLIP12.31□□□□□ -0.44
CCDC171-209ENST00000498725 AMER1Q5JTC6 1135 aaPredicted RBP12.31□□□□□ -0.44
CCDC171-209ENST00000498725 CNTROBQ8N137 903 aa12.31□□□□□ -0.44
CCDC171-209ENST00000498725 GJA3Q9Y6H8 435 aa12.31□□□□□ -0.44
CCDC171-209ENST00000498725 TRPM7Q96QT4 1865 aa12.31□□□□□ -0.44
CCDC171-209ENST00000498725 WDR33Q9C0J8 1336 aaKnown RBP12.31□□□□□ -0.44
CCDC171-209ENST00000498725 CCDC85CA6NKD9 419 aa12.3□□□□□ -0.44
CCDC171-209ENST00000498725 BTBD11A6QL63 1104 aa12.3□□□□□ -0.44
CCDC171-209ENST00000498725 NPR1P16066 1061 aa12.3□□□□□ -0.44
CCDC171-209ENST00000498725 SYNE4Q8N205 404 aa12.3□□□□□ -0.44
CCDC171-209ENST00000498725 C7orf43Q8WVR3 580 aa12.3□□□□□ -0.44
CCDC171-209ENST00000498725 TIMELESSQ9UNS1 1208 aa12.3□□□□□ -0.44
CCDC171-209ENST00000498725 USP16Q9Y5T5 823 aa12.3□□□□□ -0.44
CCDC171-209ENST00000498725 IARSP41252 1262 aaKnown RBP12.29□□□□□ -0.44
CCDC171-209ENST00000498725 TRIM26Q12899 539 aaPredicted RBP12.29□□□□□ -0.44
CCDC171-209ENST00000498725 CFAP44Q96MT7 982 aa12.29□□□□□ -0.44
CCDC171-209ENST00000498725 TSKSQ9UJT2 592 aa12.29□□□□□ -0.44
CCDC171-209ENST00000498725 LTBP1Q14766 1721 aa12.28□□□□□ -0.44
CCDC171-209ENST00000498725 RASSF10A6NK89 507 aa12.28□□□□□ -0.44
CCDC171-209ENST00000498725 SLC34A2O95436 690 aa12.28□□□□□ -0.44
CCDC171-209ENST00000498725 GTF2E1P29083 439 aaPredicted RBP12.28□□□□□ -0.44
CCDC171-209ENST00000498725 PNMA8AQ86V59 439 aaPredicted RBP12.28□□□□□ -0.44
CCDC171-209ENST00000498725 GAS2L2Q8NHY3 880 aa12.28□□□□□ -0.44
CCDC171-209ENST00000498725 NIP7Q9Y221 180 aaKnown RBP eCLIP12.28□□□□□ -0.44
CCDC171-209ENST00000498725 ZNF652Q9Y2D9 606 aa12.28□□□□□ -0.44
CCDC171-209ENST00000498725 TCERG1O14776 1098 aaKnown RBP12.27□□□□□ -0.45
CCDC171-209ENST00000498725 MAP2K1Q02750 393 aaPredicted RBP12.27□□□□□ -0.45
CCDC171-209ENST00000498725 CYP4F22Q6NT55 531 aa12.27□□□□□ -0.45
CCDC171-209ENST00000498725 TPTE2Q6XPS3 522 aa12.27□□□□□ -0.45
CCDC171-209ENST00000498725 RTKN2Q8IZC4 609 aa12.27□□□□□ -0.45
CCDC171-209ENST00000498725 COL4A5P29400 1685 aa12.26□□□□□ -0.45
CCDC171-209ENST00000498725 NUP98P52948 1817 aa12.26□□□□□ -0.45
CCDC171-209ENST00000498725 ABCB7O75027 752 aa12.26□□□□□ -0.45
CCDC171-209ENST00000498725 NGEFQ8N5V2 710 aa12.26□□□□□ -0.45
CCDC171-209ENST00000498725 JDP2Q8WYK2 163 aa12.26□□□□□ -0.45
CCDC171-209ENST00000498725 CAPNS2Q96L46 248 aa12.26□□□□□ -0.45
CCDC171-209ENST00000498725 BEGAINQ9BUH8 593 aa12.26□□□□□ -0.45
CCDC171-209ENST00000498725 DDX21Q9NR30 783 aaKnown RBP eCLIP12.26□□□□□ -0.45
CCDC171-209ENST00000498725 COL3A1P02461 1466 aaPredicted RBP12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms