RNA–Protein interactions for RNA: ENST00000497984.5

SMC4-227, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-227ENST00000497984 USP17L2Q6R6M4 530 aa9.22□□□□□ -0.93
SMC4-227ENST00000497984 USP17L1Q7RTZ2 530 aa9.22□□□□□ -0.93
SMC4-227ENST00000497984 PIK3R2O00459 728 aa9.21□□□□□ -0.94
SMC4-227ENST00000497984 UBTFP17480 764 aaKnown RBP9.21□□□□□ -0.94
SMC4-227ENST00000497984 BAG6P46379 1132 aa9.21□□□□□ -0.94
SMC4-227ENST00000497984 LRRC69Q6ZNQ3 347 aa9.21□□□□□ -0.94
SMC4-227ENST00000497984 TRIM50Q86XT4 487 aa9.21□□□□□ -0.94
SMC4-227ENST00000497984 TPCN2Q8NHX9 752 aa9.21□□□□□ -0.94
SMC4-227ENST00000497984 MDFIQ99750 246 aa9.21□□□□□ -0.94
SMC4-227ENST00000497984 HDGFL1Q5TGJ6 251 aa9.2□□□□□ -0.94
SMC4-227ENST00000497984 CCDC102BQ68D86 513 aa9.2□□□□□ -0.94
SMC4-227ENST00000497984 PRR12Q9ULL5 1215 aa9.2□□□□□ -0.94
SMC4-227ENST00000497984 GPC6Q9Y625 555 aaPredicted RBP9.2□□□□□ -0.94
SMC4-227ENST00000497984 SERTM1A2A2V5 107 aa9.19□□□□□ -0.94
SMC4-227ENST00000497984 POTEAQ6S8J7 498 aa9.19□□□□□ -0.94
SMC4-227ENST00000497984 ZNF232Q9UNY5 417 aa9.19□□□□□ -0.94
SMC4-227ENST00000497984 C1QTNF9BB2RNN3 333 aa9.18□□□□□ -0.94
SMC4-227ENST00000497984 ATP9BO43861 1147 aa9.18□□□□□ -0.94
SMC4-227ENST00000497984 ATP1A2P50993 1020 aa9.18□□□□□ -0.94
SMC4-227ENST00000497984 CD163Q86VB7 1156 aa9.18□□□□□ -0.94
SMC4-227ENST00000497984 TRIM11Q96F44 468 aa9.18□□□□□ -0.94
SMC4-227ENST00000497984 TSPAN10Q9H1Z9 355 aaPredicted RBP9.18□□□□□ -0.94
SMC4-227ENST00000497984 NOP53Q9NZM5 478 aaKnown RBP9.18□□□□□ -0.94
SMC4-227ENST00000497984 DKK1O94907 266 aa9.17□□□□□ -0.94
SMC4-227ENST00000497984 CHRNA4P43681 627 aa9.17□□□□□ -0.94
SMC4-227ENST00000497984 HIRAP54198 1017 aaPredicted RBP9.17□□□□□ -0.94
SMC4-227ENST00000497984 PSMA6P60900 246 aaKnown RBP9.17□□□□□ -0.94
SMC4-227ENST00000497984 SFSWAPQ12872 951 aaKnown RBP9.17□□□□□ -0.94
SMC4-227ENST00000497984 OGFOD1Q8N543 542 aa9.17□□□□□ -0.94
SMC4-227ENST00000497984 ELOA3CA0A087WX78 387 aaPredicted RBP9.16□□□□□ -0.94
SMC4-227ENST00000497984 ELOA3DA6NLF2 546 aaPredicted RBP9.16□□□□□ -0.94
SMC4-227ENST00000497984 K7ELQ4 463 aaPredicted RBP9.16□□□□□ -0.94
SMC4-227ENST00000497984 M0R2N6 131 aa9.16□□□□□ -0.94
SMC4-227ENST00000497984 ELOA3BQ3SY89 546 aa9.16□□□□□ -0.94
SMC4-227ENST00000497984 SYT9Q86SS6 491 aa9.16□□□□□ -0.94
SMC4-227ENST00000497984 LARGE2Q8N3Y3 721 aa9.16□□□□□ -0.94
SMC4-227ENST00000497984 ELOA3Q8NG57 546 aa9.16□□□□□ -0.94
SMC4-227ENST00000497984 RHPN1Q8TCX5 695 aa9.16□□□□□ -0.94
SMC4-227ENST00000497984 SLC30A3Q99726 388 aa9.16□□□□□ -0.94
SMC4-227ENST00000497984 MKRN1Q9UHC7 482 aaKnown RBP9.16□□□□□ -0.94
SMC4-227ENST00000497984 C1orf53Q5VUE5 145 aa9.15□□□□□ -0.94
SMC4-227ENST00000497984 SIX5Q8N196 739 aa9.15□□□□□ -0.94
SMC4-227ENST00000497984 Q8N3U1 123 aa9.15□□□□□ -0.94
SMC4-227ENST00000497984 PALM3A6NDB9 673 aaPredicted RBP9.14□□□□□ -0.95
SMC4-227ENST00000497984 SIN3BO75182 1162 aa9.14□□□□□ -0.95
SMC4-227ENST00000497984 FURINP09958 794 aa9.14□□□□□ -0.95
SMC4-227ENST00000497984 ADARB2-AS1A8MUL3 147 aa9.13□□□□□ -0.95
SMC4-227ENST00000497984 C21orf2O43822 256 aa9.13□□□□□ -0.95
SMC4-227ENST00000497984 TSEN2Q8NCE0 465 aaKnown RBP9.13□□□□□ -0.95
SMC4-227ENST00000497984 HSH2DQ96JZ2 352 aa9.13□□□□□ -0.95
SMC4-227ENST00000497984 PLVAPQ9BX97 442 aa9.13□□□□□ -0.95
SMC4-227ENST00000497984 PHACTR1Q9C0D0 580 aa9.13□□□□□ -0.95
SMC4-227ENST00000497984 NEUROD4Q9HD90 331 aa9.13□□□□□ -0.95
SMC4-227ENST00000497984 HCN4Q9Y3Q4 1203 aa9.13□□□□□ -0.95
SMC4-227ENST00000497984 SFI1A8K8P3 1242 aa9.12□□□□□ -0.95
SMC4-227ENST00000497984 FNBP4Q8N3X1 1017 aaPredicted RBP9.12□□□□□ -0.95
SMC4-227ENST00000497984 TNFRSF25Q93038 417 aa9.12□□□□□ -0.95
SMC4-227ENST00000497984 ZNF594Q96JF6 807 aaPredicted RBP9.11□□□□□ -0.95
SMC4-227ENST00000497984 STARD13Q9Y3M8 1113 aa9.11□□□□□ -0.95
SMC4-227ENST00000497984 ALAS2P22557 587 aa9.1□□□□□ -0.95
SMC4-227ENST00000497984 KCNQ4P56696 695 aa9.1□□□□□ -0.95
SMC4-227ENST00000497984 TYRO3Q06418 890 aa9.1□□□□□ -0.95
SMC4-227ENST00000497984 SPEM2Q0P670 501 aa9.1□□□□□ -0.95
SMC4-227ENST00000497984 COL9A3Q14050 684 aaPredicted RBP9.1□□□□□ -0.95
SMC4-227ENST00000497984 ZNF280CQ8ND82 737 aa9.1□□□□□ -0.95
SMC4-227ENST00000497984 CLUAP1Q96AJ1 413 aa9.1□□□□□ -0.95
SMC4-227ENST00000497984 BRD7Q9NPI1 651 aa9.1□□□□□ -0.95
SMC4-227ENST00000497984 PPP1R12BO60237 982 aaPredicted RBP9.09□□□□□ -0.95
SMC4-227ENST00000497984 SPATA31C1P0DKV0 1188 aa9.09□□□□□ -0.95
SMC4-227ENST00000497984 GLMNQ92990 594 aa9.09□□□□□ -0.95
SMC4-227ENST00000497984 SUSD3Q96L08 255 aa9.09□□□□□ -0.95
SMC4-227ENST00000497984 CEP63Q96MT8 703 aa9.09□□□□□ -0.95
SMC4-227ENST00000497984 ANKIB1Q9P2G1 1089 aa9.09□□□□□ -0.95
SMC4-227ENST00000497984 CHMP3Q9Y3E7 222 aa9.09□□□□□ -0.95
SMC4-227ENST00000497984 RAB44Q7Z6P3 723 aaPredicted RBP9.08□□□□□ -0.96
SMC4-227ENST00000497984 STAG2Q8N3U4 1231 aa9.08□□□□□ -0.96
SMC4-227ENST00000497984 TFIP11Q9UBB9 837 aaKnown RBP9.08□□□□□ -0.96
SMC4-227ENST00000497984 MAFBQ9Y5Q3 323 aaPredicted RBP9.08□□□□□ -0.96
SMC4-227ENST00000497984 M0R082 166 aa9.07□□□□□ -0.96
SMC4-227ENST00000497984 ALBP02768 609 aa9.07□□□□□ -0.96
SMC4-227ENST00000497984 PROSER2Q86WR7 435 aaPredicted RBP9.07□□□□□ -0.96
SMC4-227ENST00000497984 ALDH16A1Q8IZ83 802 aa9.07□□□□□ -0.96
SMC4-227ENST00000497984 ZNF417Q8TAU3 575 aa9.07□□□□□ -0.96
SMC4-227ENST00000497984 ZNF587Q96SQ5 575 aaPredicted RBP9.07□□□□□ -0.96
SMC4-227ENST00000497984 C2orf49Q9BVC5 232 aaPredicted RBP9.07□□□□□ -0.96
SMC4-227ENST00000497984 PRDM6Q9NQX0 595 aa9.07□□□□□ -0.96
SMC4-227ENST00000497984 KCNH4Q9UQ05 1017 aa9.07□□□□□ -0.96
SMC4-227ENST00000497984 ATAD2Q6PL18 1390 aa9.07□□□□□ -0.96
SMC4-227ENST00000497984 RASA1P20936 1047 aa9.06□□□□□ -0.96
SMC4-227ENST00000497984 ADH7P40394 386 aa9.06□□□□□ -0.96
SMC4-227ENST00000497984 LCE3BQ5TA77 95 aa9.06□□□□□ -0.96
SMC4-227ENST00000497984 MICALL1Q8N3F8 863 aa9.06□□□□□ -0.96
SMC4-227ENST00000497984 ITGB7P26010 798 aa9.05□□□□□ -0.96
SMC4-227ENST00000497984 SEC13P55735 322 aa9.05□□□□□ -0.96
SMC4-227ENST00000497984 C20orf204Q6ZNR8 217 aa9.05□□□□□ -0.96
SMC4-227ENST00000497984 C8orf86Q6ZUL3 223 aa9.05□□□□□ -0.96
SMC4-227ENST00000497984 SCG3Q8WXD2 468 aaKnown RBP9.05□□□□□ -0.96
SMC4-227ENST00000497984 NID1P14543 1247 aa9.04□□□□□ -0.96
SMC4-227ENST00000497984 NEUROD1Q13562 356 aa9.04□□□□□ -0.96
SMC4-227ENST00000497984 DOC2BQ14184 412 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms