RNA–Protein interactions for RNA: ENST00000497597.5

TRAPPC12-223, Transcript of trafficking protein particle complex 12, human

TSL 2

Gene TRAPPC12, Length 3,401 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAPPC12-223	ENST00000497597	NME9	Q86XW9	330 aa		12.48	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	LRRC8A	Q8IWT6	810 aa		12.48	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	DRC1	Q96MC2	740 aa		12.48	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	POLK	Q9UBT6	870 aa		12.48	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	CCDC171	Q6TFL3	1326 aa		12.48	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	KIN	O60870	393 aa	Known RBP	12.48	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	SF3A1	Q15459	793 aa	Known RBP	12.48	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	ADCK5	Q3MIX3	580 aa		12.48	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	MYO5C	Q9NQX4	1742 aa		12.48	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	RTL1	A6NKG5	1358 aa		12.48	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	UBTFL1	P0CB47	393 aa	Predicted RBP	12.47	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	PDILT	Q8N807	584 aa		12.47	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	CARD6	Q9BX69	1037 aa		12.47	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	LCMT1	Q9UIC8	334 aa		12.47	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	OAS2	P29728	719 aa	Known RBP	12.47	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	MCM6	Q14566	821 aa		12.47	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	ZSCAN26	Q16670	478 aa		12.47	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	CNTROB	Q8N137	903 aa		12.47	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	LRRC2	Q9BYS8	371 aa		12.47	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	RPAP1	Q9BWH6	1393 aa	Predicted RBP	12.47	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	LOC102724159	A0A0B4J2E5	919 aa		12.47	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	SFPQ	P23246	707 aa	Known RBP eCLIP	12.47	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	ME1	P48163	572 aa		12.47	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	HAP1	P54257	671 aa	Predicted RBP	12.47	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	PWP2	Q15269	919 aa	Known RBP	12.47	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	LARP1	Q6PKG0	1096 aa	Known RBP	12.47	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	GOLGA6L1	Q8N7Z2	621 aa		12.47	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	ZNF446	Q9NWS9	450 aa		12.47	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	UGGT1	Q9NYU2	1555 aa		12.46	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	PNMA6A	P0CW24	399 aa	Predicted RBP	12.46	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	C11orf57	Q6ZUT1	292 aa	Predicted RBP	12.46	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	SRGAP3	O43295	1099 aa		12.46	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	EP400NL	Q6ZTU2	488 aa		12.46	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	STK11IP	Q8N1F8	1099 aa		12.46	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	CDK19	Q9BWU1	502 aa		12.46	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	CWC15	Q9P013	229 aa	Known RBP	12.46	□□□□□ -0.41
TRAPPC12-223	ENST00000497597	ME3	Q16798	604 aa		12.46	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	LEKR1	Q6ZMV7	388 aa		12.46	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	SMARCE1	Q969G3	411 aa		12.46	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	FUCA2	Q9BTY2	467 aa		12.46	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	TSPYL1	Q9H0U9	437 aa		12.46	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	DDX19A	Q9NUU7	478 aa	Known RBP	12.46	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	RGS12	O14924	1447 aa		12.45	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	HSPA4	P34932	840 aa		12.45	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	GOLGA8F	Q08AF8	430 aa		12.45	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	GOLGA8DP	Q0D2H9	430 aa		12.45	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	AK7	Q96M32	723 aa		12.45	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	FTO	Q9C0B1	505 aa	Known RBP eCLIP	12.45	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	PLEKHA4	Q9H4M7	779 aa		12.45	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	C14orf93	Q9H972	538 aa	Known RBP	12.45	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	E2F4	Q16254	413 aa		12.44	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	SCAND2P	Q9GZW5	306 aa	Predicted RBP	12.44	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	CYP2C19	P33261	490 aa		12.44	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	PTH1R	Q03431	593 aa		12.44	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	TXLNB	Q8N3L3	684 aa		12.44	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	LTV1	Q96GA3	475 aa	Predicted RBP	12.44	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	IFNK	Q9P0W0	207 aa		12.44	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	CDC42BPA	Q5VT25	1732 aa		12.43	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	CROCC2	H7BZ55	1655 aa		12.43	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	ARAP3	Q8WWN8	1544 aa		12.43	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	MYO1C	O00159	1063 aa		12.43	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	FOXO3	O43524	673 aa		12.43	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	JAK2	O60674	1132 aa		12.43	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	GNAI3	P08754	354 aa		12.43	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	PDC	P20941	246 aa		12.43	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	LMOD1	P29536	600 aa	Predicted RBP	12.43	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	EVC	P57679	992 aa		12.43	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	SART3	Q15020	963 aa	Known RBP	12.43	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	CCAR1	Q8IX12	1150 aa	Known RBP	12.43	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	CEP57L1	Q8IYX8	460 aa		12.43	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	LEO1	Q8WVC0	666 aa	Predicted RBP	12.43	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	COG3	Q96JB2	828 aa		12.43	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	PRR29	P0C7W0	189 aa		12.43	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	BLOC1S2	Q6QNY1	142 aa		12.43	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	RABEP2	Q9H5N1	569 aa		12.43	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	RNF216	Q9NWF9	866 aa	Predicted RBP	12.43	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	MYOM1	P52179	1685 aa		12.43	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	VGF	O15240	615 aa	Predicted RBP	12.43	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	CCT4	P50991	539 aa	Known RBP	12.43	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	WAPL	Q7Z5K2	1190 aa		12.43	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	TMEM87A	Q8NBN3	555 aa		12.43	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	RGS22	Q8NE09	1264 aa		12.43	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	RUFY2	Q8WXA3	655 aa		12.43	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	VPS18	Q9P253	973 aa		12.43	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	TRAPPC8	Q9Y2L5	1435 aa		12.42	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	IFIT2	P09913	472 aa	Known RBP	12.42	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	CCDC102A	Q96A19	550 aa		12.42	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	CLSTN2	Q9H4D0	955 aa		12.42	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	PPP6R1	Q9UPN7	881 aa		12.42	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	PPP1R42	Q7Z4L9	355 aa		12.42	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	FSIP1	Q8NA03	581 aa		12.42	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	12.42	□□□□□ -0.42	1e-6	■□□□□ 10.1
TRAPPC12-223	ENST00000497597	NPHP3	Q7Z494	1330 aa		12.42	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	SGSM2	O43147	1006 aa		12.42	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	SMC1A	Q14683	1233 aa	Known RBP	12.42	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	BRF1	Q92994	677 aa		12.42	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	SRRT	Q9BXP5	876 aa	Known RBP	12.42	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	12.42	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	TPCN1	Q9ULQ1	816 aa		12.42	□□□□□ -0.42
TRAPPC12-223	ENST00000497597	GNG11	P61952	73 aa		12.41	□□□□□ -0.42

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