RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, human

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B1-212	ENST00000496458	DCDC2B	A2VCK2	349 aa		11.33	□□□□□ -0.6
SF3B1-212	ENST00000496458	ATXN7	O15265	892 aa	Predicted RBP	11.33	□□□□□ -0.6
SF3B1-212	ENST00000496458	PRMT3	O60678	531 aa		11.33	□□□□□ -0.6
SF3B1-212	ENST00000496458	ADAMTS2	O95450	1211 aa		11.33	□□□□□ -0.6
SF3B1-212	ENST00000496458	SRSF11	Q05519	484 aa	Known RBP	11.33	□□□□□ -0.6
SF3B1-212	ENST00000496458	NEUROD4	Q9HD90	331 aa		11.33	□□□□□ -0.6
SF3B1-212	ENST00000496458	NDFIP2	Q9NV92	336 aa		11.33	□□□□□ -0.6
SF3B1-212	ENST00000496458	C7orf43	Q8WVR3	580 aa		11.32	□□□□□ -0.6
SF3B1-212	ENST00000496458	GPC6	Q9Y625	555 aa	Predicted RBP	11.32	□□□□□ -0.6
SF3B1-212	ENST00000496458	IGF1R	P08069	1367 aa		11.31	□□□□□ -0.6
SF3B1-212	ENST00000496458	FOXO3	O43524	673 aa		11.31	□□□□□ -0.6
SF3B1-212	ENST00000496458	PPP1R15A	O75807	674 aa	Predicted RBP	11.31	□□□□□ -0.6
SF3B1-212	ENST00000496458	VTI1A	Q96AJ9	217 aa		11.31	□□□□□ -0.6
SF3B1-212	ENST00000496458	HSH2D	Q96JZ2	352 aa		11.31	□□□□□ -0.6
SF3B1-212	ENST00000496458	KHNYN	O15037	678 aa	Known RBP	11.3	□□□□□ -0.6
SF3B1-212	ENST00000496458	SLURP2	P0DP57	97 aa		11.3	□□□□□ -0.6
SF3B1-212	ENST00000496458	FGFR3	P22607	806 aa		11.3	□□□□□ -0.6
SF3B1-212	ENST00000496458	MAPT	P10636	758 aa	Known RBP	11.29	□□□□□ -0.6
SF3B1-212	ENST00000496458	SAMD5	Q5TGI4	173 aa		11.29	□□□□□ -0.6
SF3B1-212	ENST00000496458	NSFL1C	Q9UNZ2	370 aa	Known RBP	11.29	□□□□□ -0.6
SF3B1-212	ENST00000496458	FAM157B	P0CG42	384 aa		11.28	□□□□□ -0.6
SF3B1-212	ENST00000496458	TNP2	Q05952	138 aa		11.28	□□□□□ -0.6
SF3B1-212	ENST00000496458	FKBP5	Q13451	457 aa	Predicted RBP	11.28	□□□□□ -0.6
SF3B1-212	ENST00000496458	OCLN	Q16625	522 aa		11.28	□□□□□ -0.6
SF3B1-212	ENST00000496458	WHAMM	Q8TF30	809 aa		11.28	□□□□□ -0.6
SF3B1-212	ENST00000496458	CTBS	Q01459	385 aa		11.27	□□□□□ -0.61
SF3B1-212	ENST00000496458	RTN1	Q16799	776 aa		11.27	□□□□□ -0.61
SF3B1-212	ENST00000496458	ZNF280C	Q8ND82	737 aa		11.27	□□□□□ -0.61
SF3B1-212	ENST00000496458	SUSD3	Q96L08	255 aa		11.27	□□□□□ -0.61
SF3B1-212	ENST00000496458	ANKIB1	Q9P2G1	1089 aa		11.27	□□□□□ -0.61
SF3B1-212	ENST00000496458	HCN2	Q9UL51	889 aa		11.27	□□□□□ -0.61
SF3B1-212	ENST00000496458	BMP4	P12644	408 aa		11.26	□□□□□ -0.61
SF3B1-212	ENST00000496458	CD33	P20138	364 aa		11.26	□□□□□ -0.61
SF3B1-212	ENST00000496458	MAP2K3	P46734	347 aa		11.26	□□□□□ -0.61
SF3B1-212	ENST00000496458	ZNF385C	Q66K41	422 aa	Predicted RBP	11.26	□□□□□ -0.61
SF3B1-212	ENST00000496458	SVOP	Q8N4V2	548 aa		11.26	□□□□□ -0.61
SF3B1-212	ENST00000496458	CLP1	Q92989	425 aa	Known RBP	11.26	□□□□□ -0.61
SF3B1-212	ENST00000496458	STK17A	Q9UEE5	414 aa		11.26	□□□□□ -0.61
SF3B1-212	ENST00000496458	QTRT2	Q9H974	415 aa	Known RBP	11.25	□□□□□ -0.61
SF3B1-212	ENST00000496458	CXXC1	Q9P0U4	656 aa	Predicted RBP	11.25	□□□□□ -0.61
SF3B1-212	ENST00000496458	SLAIN2	Q9P270	581 aa		11.25	□□□□□ -0.61
SF3B1-212	ENST00000496458	C2CD2L	O14523	706 aa		11.24	□□□□□ -0.61
SF3B1-212	ENST00000496458	EFS	O43281	561 aa		11.24	□□□□□ -0.61
SF3B1-212	ENST00000496458	LYPD4	Q6UWN0	246 aa		11.24	□□□□□ -0.61
SF3B1-212	ENST00000496458	MKNK1	Q9BUB5	465 aa		11.24	□□□□□ -0.61
SF3B1-212	ENST00000496458	STRN4	Q9NRL3	753 aa		11.24	□□□□□ -0.61
SF3B1-212	ENST00000496458	HIF1A	Q16665	826 aa		11.23	□□□□□ -0.61
SF3B1-212	ENST00000496458	ACD	Q96AP0	544 aa		11.23	□□□□□ -0.61
SF3B1-212	ENST00000496458	CEP63	Q96MT8	703 aa		11.23	□□□□□ -0.61
SF3B1-212	ENST00000496458	KLK14	Q9P0G3	267 aa		11.23	□□□□□ -0.61
SF3B1-212	ENST00000496458	FAM181B	A6NEQ2	426 aa		11.22	□□□□□ -0.61
SF3B1-212	ENST00000496458	DGKZ	Q13574	1117 aa		11.22	□□□□□ -0.61
SF3B1-212	ENST00000496458	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	11.22	□□□□□ -0.61
SF3B1-212	ENST00000496458	TMEM88B	A6NKF7	163 aa		11.21	□□□□□ -0.61
SF3B1-212	ENST00000496458	CELA2B	P08218	269 aa	Predicted RBP	11.21	□□□□□ -0.61
SF3B1-212	ENST00000496458	ATP2B4	P23634	1241 aa		11.21	□□□□□ -0.61
SF3B1-212	ENST00000496458	TYRO3	Q06418	890 aa		11.21	□□□□□ -0.61
SF3B1-212	ENST00000496458	OXCT2	Q9BYC2	517 aa	Predicted RBP	11.21	□□□□□ -0.61
SF3B1-212	ENST00000496458	BRD7	Q9NPI1	651 aa		11.21	□□□□□ -0.61
SF3B1-212	ENST00000496458	MARK1	Q9P0L2	795 aa		11.21	□□□□□ -0.61
SF3B1-212	ENST00000496458	MAP3K10	Q02779	954 aa		11.2	□□□□□ -0.62
SF3B1-212	ENST00000496458	SFSWAP	Q12872	951 aa	Known RBP	11.2	□□□□□ -0.62
SF3B1-212	ENST00000496458	LAMC2	Q13753	1193 aa		11.2	□□□□□ -0.62
SF3B1-212	ENST00000496458	FAM182B	Q5T319	152 aa		11.2	□□□□□ -0.62
SF3B1-212	ENST00000496458	BTLA	Q7Z6A9	289 aa		11.2	□□□□□ -0.62
SF3B1-212	ENST00000496458	MYO19	Q96H55	970 aa		11.2	□□□□□ -0.62
SF3B1-212	ENST00000496458	BCS1L	Q9Y276	419 aa		11.2	□□□□□ -0.62
SF3B1-212	ENST00000496458	CARNS1	A5YM72	827 aa		11.19	□□□□□ -0.62
SF3B1-212	ENST00000496458	TGFBR3L	H3BV60	316 aa		11.19	□□□□□ -0.62
SF3B1-212	ENST00000496458	CAPN12	Q6ZSI9	719 aa		11.19	□□□□□ -0.62
SF3B1-212	ENST00000496458	BCR	P11274	1271 aa		11.18	□□□□□ -0.62
SF3B1-212	ENST00000496458	GRIN2C	Q14957	1233 aa		11.18	□□□□□ -0.62
SF3B1-212	ENST00000496458	IER5	Q5VY09	327 aa		11.18	□□□□□ -0.62
SF3B1-212	ENST00000496458	LRFN2	Q9ULH4	789 aa		11.18	□□□□□ -0.62
SF3B1-212	ENST00000496458	COX20	Q5RI15	118 aa		11.17	□□□□□ -0.62
SF3B1-212	ENST00000496458	SAP130	Q9H0E3	1048 aa		11.17	□□□□□ -0.62
SF3B1-212	ENST00000496458	NAA30	Q147X3	362 aa	Predicted RBP	11.16	□□□□□ -0.62
SF3B1-212	ENST00000496458	C11orf91	Q3C1V1	193 aa		11.16	□□□□□ -0.62
SF3B1-212	ENST00000496458	GOLGA6L1	Q8N7Z2	621 aa		11.16	□□□□□ -0.62
SF3B1-212	ENST00000496458	COL26A1	Q96A83	441 aa		11.16	□□□□□ -0.62
SF3B1-212	ENST00000496458	GGA1	Q9UJY5	639 aa		11.16	□□□□□ -0.62
SF3B1-212	ENST00000496458	GDF2	Q9UK05	429 aa	Predicted RBP	11.16	□□□□□ -0.62
SF3B1-212	ENST00000496458	PRR12	Q9ULL5	1215 aa		11.16	□□□□□ -0.62
SF3B1-212	ENST00000496458	PTCD1	O75127	700 aa	Known RBP	11.15	□□□□□ -0.62
SF3B1-212	ENST00000496458	ARHGEF15	O94989	841 aa		11.15	□□□□□ -0.62
SF3B1-212	ENST00000496458	ARAF	P10398	606 aa		11.15	□□□□□ -0.62
SF3B1-212	ENST00000496458	C16orf46	Q6P387	395 aa		11.15	□□□□□ -0.62
SF3B1-212	ENST00000496458	DMGDH	Q9UI17	866 aa	Known RBP	11.15	□□□□□ -0.62
SF3B1-212	ENST00000496458	KCNH4	Q9UQ05	1017 aa		11.15	□□□□□ -0.62
SF3B1-212	ENST00000496458	NEURL1B	A8MQ27	555 aa		11.14	□□□□□ -0.63
SF3B1-212	ENST00000496458	OIP5	O43482	229 aa		11.14	□□□□□ -0.63
SF3B1-212	ENST00000496458	SLC30A3	Q99726	388 aa		11.14	□□□□□ -0.63
SF3B1-212	ENST00000496458	IDH3A	P50213	366 aa		11.13	□□□□□ -0.63
SF3B1-212	ENST00000496458	KCNQ4	P56696	695 aa		11.13	□□□□□ -0.63
SF3B1-212	ENST00000496458	PCBP4	P57723	403 aa	Known RBP	11.13	□□□□□ -0.63
SF3B1-212	ENST00000496458	ZNF468	Q5VIY5	522 aa	Predicted RBP	11.13	□□□□□ -0.63
SF3B1-212	ENST00000496458	C1orf229	Q6ZS94	237 aa	Predicted RBP	11.13	□□□□□ -0.63
SF3B1-212	ENST00000496458	IFT43	Q96FT9	208 aa		11.13	□□□□□ -0.63
SF3B1-212	ENST00000496458	ENAM	Q9NRM1	1142 aa		11.13	□□□□□ -0.63
SF3B1-212	ENST00000496458	ADAMTS8	Q9UP79	889 aa		11.13	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms