RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 NBPF4Q96M43 638 aa8.63□□□□□ -1.03
USP39-219ENST00000496047 ARFGEF2Q9Y6D5 1785 aa8.63□□□□□ -1.03
USP39-219ENST00000496047 RGS12O14924 1447 aa8.63□□□□□ -1.03
USP39-219ENST00000496047 BTBD11A6QL63 1104 aa8.62□□□□□ -1.03
USP39-219ENST00000496047 FKBP5Q13451 457 aaPredicted RBP8.62□□□□□ -1.03
USP39-219ENST00000496047 ZNF772Q68DY9 489 aaPredicted RBP8.62□□□□□ -1.03
USP39-219ENST00000496047 NLRP2Q9NX02 1062 aa8.62□□□□□ -1.03
USP39-219ENST00000496047 UBR2Q8IWV8 1755 aa8.62□□□□□ -1.03
USP39-219ENST00000496047 SHANK3Q9BYB0 1731 aa8.62□□□□□ -1.03
USP39-219ENST00000496047 MRC1P22897 1456 aa8.62□□□□□ -1.03
USP39-219ENST00000496047 ITGB4P16144 1822 aa8.61□□□□□ -1.03
USP39-219ENST00000496047 RNMTO43148 476 aaKnown RBP8.61□□□□□ -1.03
USP39-219ENST00000496047 ZC3H6P61129 1189 aaKnown RBP8.61□□□□□ -1.03
USP39-219ENST00000496047 NUCB1Q02818 461 aa8.61□□□□□ -1.03
USP39-219ENST00000496047 FLIIQ13045 1269 aa8.61□□□□□ -1.03
USP39-219ENST00000496047 CASC1Q6TDU7 716 aa8.61□□□□□ -1.03
USP39-219ENST00000496047 SLC4A10Q6U841 1118 aa8.61□□□□□ -1.03
USP39-219ENST00000496047 CHD1LQ86WJ1 897 aa8.61□□□□□ -1.03
USP39-219ENST00000496047 ZNF710Q8N1W2 664 aa8.61□□□□□ -1.03
USP39-219ENST00000496047 LRRC59Q96AG4 307 aaKnown RBP8.61□□□□□ -1.03
USP39-219ENST00000496047 ROBO1Q9Y6N7 1651 aa8.61□□□□□ -1.03
USP39-219ENST00000496047 PAPPAQ13219 1627 aa8.61□□□□□ -1.03
USP39-219ENST00000496047 COL22A1Q8NFW1 1626 aaPredicted RBP8.61□□□□□ -1.03
USP39-219ENST00000496047 PHLPP1O60346 1717 aa8.6□□□□□ -1.03
USP39-219ENST00000496047 GNAI2P04899 355 aa8.6□□□□□ -1.03
USP39-219ENST00000496047 RTL5Q5HYW3 569 aaPredicted RBP8.6□□□□□ -1.03
USP39-219ENST00000496047 ANKRD45Q5TZF3 282 aa8.6□□□□□ -1.03
USP39-219ENST00000496047 ANKRD44Q8N8A2 993 aa8.6□□□□□ -1.03
USP39-219ENST00000496047 IL17REQ8NFR9 667 aa8.6□□□□□ -1.03
USP39-219ENST00000496047 BOLA1Q9Y3E2 137 aa8.6□□□□□ -1.03
USP39-219ENST00000496047 AHDC1Q5TGY3 1603 aaPredicted RBP8.59□□□□□ -1.03
USP39-219ENST00000496047 DDX58O95786 925 aaKnown RBP8.59□□□□□ -1.03
USP39-219ENST00000496047 RXRBP28702 533 aa8.59□□□□□ -1.03
USP39-219ENST00000496047 KRT24Q2M2I5 525 aa8.59□□□□□ -1.03
USP39-219ENST00000496047 BRINP3Q76B58 766 aa8.59□□□□□ -1.03
USP39-219ENST00000496047 SKAP1Q86WV1 359 aa8.59□□□□□ -1.03
USP39-219ENST00000496047 IFNL2Q8IZJ0 200 aa8.59□□□□□ -1.03
USP39-219ENST00000496047 C1orf115Q9H7X2 142 aa8.59□□□□□ -1.03
USP39-219ENST00000496047 MIS18AQ9NYP9 233 aa8.59□□□□□ -1.03
USP39-219ENST00000496047 ATP10DQ9P241 1426 aa8.59□□□□□ -1.03
USP39-219ENST00000496047 EIF4A1P60842 406 aaKnown RBP8.58□□□□□ -1.04
USP39-219ENST00000496047 BMP2KLQ5H9B9 411 aa8.58□□□□□ -1.04
USP39-219ENST00000496047 TTC5Q8N0Z6 440 aa8.58□□□□□ -1.04
USP39-219ENST00000496047 LNPKQ9C0E8 428 aa8.58□□□□□ -1.04
USP39-219ENST00000496047 PRDM11Q9NQV5 511 aa8.58□□□□□ -1.04
USP39-219ENST00000496047 DBF4Q9UBU7 674 aaPredicted RBP8.58□□□□□ -1.04
USP39-219ENST00000496047 MEGF6O75095 1541 aa8.58□□□□□ -1.04
USP39-219ENST00000496047 MYH3P11055 1940 aa8.58□□□□□ -1.04
USP39-219ENST00000496047 NWD2Q9ULI1 1742 aa8.57□□□□□ -1.04
USP39-219ENST00000496047 SOS2Q07890 1332 aaPredicted RBP8.57□□□□□ -1.04
USP39-219ENST00000496047 PCDH11XQ9BZA7 1347 aa8.57□□□□□ -1.04
USP39-219ENST00000496047 PCDH11YQ9BZA8 1340 aa8.57□□□□□ -1.04
USP39-219ENST00000496047 UBTFL1P0CB47 393 aaPredicted RBP8.57□□□□□ -1.04
USP39-219ENST00000496047 EIF2S2P20042 333 aaKnown RBP8.57□□□□□ -1.04
USP39-219ENST00000496047 CEP85Q6P2H3 762 aa8.57□□□□□ -1.04
USP39-219ENST00000496047 MPRIPQ6WCQ1 1025 aa8.57□□□□□ -1.04
USP39-219ENST00000496047 SRCIN1Q9C0H9 1055 aa8.57□□□□□ -1.04
USP39-219ENST00000496047 DCTPP1Q9H773 170 aa8.57□□□□□ -1.04
USP39-219ENST00000496047 SLAIN2Q9P270 581 aa8.57□□□□□ -1.04
USP39-219ENST00000496047 ANKRD36CQ5JPF3 1778 aa8.57□□□□□ -1.04
USP39-219ENST00000496047 NUP188Q5SRE5 1749 aa8.57□□□□□ -1.04
USP39-219ENST00000496047 COL5A2P05997 1499 aaPredicted RBP8.57□□□□□ -1.04
USP39-219ENST00000496047 WDR17Q8IZU2 1322 aa8.56□□□□□ -1.04
USP39-219ENST00000496047 PPP1R37O75864 691 aa8.56□□□□□ -1.04
USP39-219ENST00000496047 HSP90AB4PQ58FF6 505 aa8.56□□□□□ -1.04
USP39-219ENST00000496047 NECTIN2Q92692 538 aa8.56□□□□□ -1.04
USP39-219ENST00000496047 DCAF5Q96JK2 942 aa8.56□□□□□ -1.04
USP39-219ENST00000496047 MEIS3Q99687 375 aa8.56□□□□□ -1.04
USP39-219ENST00000496047 SLC52A2Q9HAB3 445 aa8.56□□□□□ -1.04
USP39-219ENST00000496047 HYPKQ9NX55 129 aa8.56□□□□□ -1.04
USP39-219ENST00000496047 CDC45O75419 566 aa8.55□□□□□ -1.04
USP39-219ENST00000496047 HOXB3P14651 431 aaPredicted RBP8.55□□□□□ -1.04
USP39-219ENST00000496047 PHKG2P15735 406 aa8.55□□□□□ -1.04
USP39-219ENST00000496047 NEXNQ0ZGT2 675 aa8.55□□□□□ -1.04
USP39-219ENST00000496047 TOM1L2Q6ZVM7 507 aa8.55□□□□□ -1.04
USP39-219ENST00000496047 DNAAF4Q8WXU2 420 aa8.55□□□□□ -1.04
USP39-219ENST00000496047 LGR6Q9HBX8 967 aa8.55□□□□□ -1.04
USP39-219ENST00000496047 AXIN2Q9Y2T1 843 aa8.55□□□□□ -1.04
USP39-219ENST00000496047 KDM6AO15550 1401 aaPredicted RBP8.54□□□□□ -1.04
USP39-219ENST00000496047 LRP6O75581 1613 aa8.54□□□□□ -1.04
USP39-219ENST00000496047 TOGARAM1Q9Y4F4 1720 aa8.54□□□□□ -1.04
USP39-219ENST00000496047 F6X3S4 739 aa8.54□□□□□ -1.04
USP39-219ENST00000496047 TULP1O00294 542 aaPredicted RBP8.54□□□□□ -1.04
USP39-219ENST00000496047 ALDH1L1O75891 902 aa8.54□□□□□ -1.04
USP39-219ENST00000496047 HOXB1P14653 301 aaPredicted RBP8.54□□□□□ -1.04
USP39-219ENST00000496047 YY1P25490 414 aa8.54□□□□□ -1.04
USP39-219ENST00000496047 MFAP1P55081 439 aaKnown RBP8.54□□□□□ -1.04
USP39-219ENST00000496047 CABP4P57796 275 aa8.54□□□□□ -1.04
USP39-219ENST00000496047 EVA1CP58658 441 aa8.54□□□□□ -1.04
USP39-219ENST00000496047 CHRNA2Q15822 529 aa8.54□□□□□ -1.04
USP39-219ENST00000496047 DOK7Q18PE1 504 aa8.54□□□□□ -1.04
USP39-219ENST00000496047 G2E3Q7L622 706 aa8.54□□□□□ -1.04
USP39-219ENST00000496047 DDX17Q92841 729 aaKnown RBP8.54□□□□□ -1.04
USP39-219ENST00000496047 TBC1D32Q96NH3 1257 aa8.54□□□□□ -1.04
USP39-219ENST00000496047 CHPF2Q9P2E5 772 aa8.54□□□□□ -1.04
USP39-219ENST00000496047 DOT1LQ8TEK3 1739 aa8.54□□□□□ -1.04
USP39-219ENST00000496047 IBTKQ9P2D0 1353 aaPredicted RBP8.53□□□□□ -1.04
USP39-219ENST00000496047 RAB11FIP3O75154 756 aa8.53□□□□□ -1.04
USP39-219ENST00000496047 ZNF790Q6PG37 636 aa8.53□□□□□ -1.04
USP39-219ENST00000496047 HSCBQ8IWL3 235 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms