RNA–Protein interactions for RNA: ENST00000495817.1

CCDC39-207, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 1,047 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-207ENST00000495817 RNFT1Q5M7Z0 435 aa10.56□□□□□ -0.72
CCDC39-207ENST00000495817 ALDH16A1Q8IZ83 802 aa10.56□□□□□ -0.72
CCDC39-207ENST00000495817 C7orf43Q8WVR3 580 aa10.56□□□□□ -0.72
CCDC39-207ENST00000495817 VTI1AQ96AJ9 217 aa10.56□□□□□ -0.72
CCDC39-207ENST00000495817 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.56□□□□□ -0.72
CCDC39-207ENST00000495817 NDFIP2Q9NV92 336 aa10.56□□□□□ -0.72
CCDC39-207ENST00000495817 ANKIB1Q9P2G1 1089 aa10.56□□□□□ -0.72
CCDC39-207ENST00000495817 GPR25O00155 361 aa10.55□□□□□ -0.72
CCDC39-207ENST00000495817 FAM157BP0CG42 384 aa10.55□□□□□ -0.72
CCDC39-207ENST00000495817 SRSF11Q05519 484 aaKnown RBP10.55□□□□□ -0.72
CCDC39-207ENST00000495817 ZCCHC2Q9C0B9 1178 aaKnown RBP10.55□□□□□ -0.72
CCDC39-207ENST00000495817 NSFL1CQ9UNZ2 370 aaKnown RBP10.55□□□□□ -0.72
CCDC39-207ENST00000495817 HCN4Q9Y3Q4 1203 aa10.55□□□□□ -0.72
CCDC39-207ENST00000495817 ATXN7O15265 892 aaPredicted RBP10.54□□□□□ -0.72
CCDC39-207ENST00000495817 PRMT3O60678 531 aa10.54□□□□□ -0.72
CCDC39-207ENST00000495817 LGR5O75473 907 aa10.54□□□□□ -0.72
CCDC39-207ENST00000495817 COL26A1Q96A83 441 aa10.54□□□□□ -0.72
CCDC39-207ENST00000495817 CNTNAP3BQ96NU0 1288 aa10.54□□□□□ -0.72
CCDC39-207ENST00000495817 CNTNAP3Q9BZ76 1288 aa10.54□□□□□ -0.72
CCDC39-207ENST00000495817 NEUROD4Q9HD90 331 aa10.54□□□□□ -0.72
CCDC39-207ENST00000495817 CXXC1Q9P0U4 656 aaPredicted RBP10.54□□□□□ -0.72
CCDC39-207ENST00000495817 USTQ9Y2C2 406 aa10.54□□□□□ -0.72
CCDC39-207ENST00000495817 MX2P20592 715 aa10.53□□□□□ -0.72
CCDC39-207ENST00000495817 BNIP3LO60238 219 aa10.52□□□□□ -0.73
CCDC39-207ENST00000495817 SLURP2P0DP57 97 aa10.52□□□□□ -0.73
CCDC39-207ENST00000495817 FKBP5Q13451 457 aaPredicted RBP10.52□□□□□ -0.73
CCDC39-207ENST00000495817 LAMC2Q13753 1193 aa10.52□□□□□ -0.73
CCDC39-207ENST00000495817 ABHD17AQ96GS6 310 aa10.52□□□□□ -0.73
CCDC39-207ENST00000495817 PRIMPOLQ96LW4 560 aa10.52□□□□□ -0.73
CCDC39-207ENST00000495817 PTCD1O75127 700 aaKnown RBP10.51□□□□□ -0.73
CCDC39-207ENST00000495817 FGFR3P22607 806 aa10.51□□□□□ -0.73
CCDC39-207ENST00000495817 MAP2K3P46734 347 aa10.51□□□□□ -0.73
CCDC39-207ENST00000495817 IER5Q5VY09 327 aa10.51□□□□□ -0.73
CCDC39-207ENST00000495817 LRRC69Q6ZNQ3 347 aa10.51□□□□□ -0.73
CCDC39-207ENST00000495817 MYO19Q96H55 970 aa10.51□□□□□ -0.73
CCDC39-207ENST00000495817 NGLY1Q96IV0 654 aa10.51□□□□□ -0.73
CCDC39-207ENST00000495817 TMEM88BA6NKF7 163 aa10.5□□□□□ -0.73
CCDC39-207ENST00000495817 ATP2B4P23634 1241 aa10.5□□□□□ -0.73
CCDC39-207ENST00000495817 FAM182BQ5T319 152 aa10.5□□□□□ -0.73
CCDC39-207ENST00000495817 QTRT2Q9H974 415 aaKnown RBP10.5□□□□□ -0.73
CCDC39-207ENST00000495817 EFSO43281 561 aa10.49□□□□□ -0.73
CCDC39-207ENST00000495817 TNP2Q05952 138 aa10.49□□□□□ -0.73
CCDC39-207ENST00000495817 ZSCAN1Q8NBB4 408 aa10.49□□□□□ -0.73
CCDC39-207ENST00000495817 SUSD3Q96L08 255 aa10.49□□□□□ -0.73
CCDC39-207ENST00000495817 DCDC2BA2VCK2 349 aa10.48□□□□□ -0.73
CCDC39-207ENST00000495817 ADAMTS2O95450 1211 aa10.48□□□□□ -0.73
CCDC39-207ENST00000495817 MAPTP10636 758 aaKnown RBP10.48□□□□□ -0.73
CCDC39-207ENST00000495817 IGF1RP08069 1367 aa10.48□□□□□ -0.73
CCDC39-207ENST00000495817 TGFBR3LH3BV60 316 aa10.47□□□□□ -0.73
CCDC39-207ENST00000495817 KHNYNO15037 678 aaKnown RBP10.47□□□□□ -0.73
CCDC39-207ENST00000495817 HSH2DQ96JZ2 352 aa10.47□□□□□ -0.73
CCDC39-207ENST00000495817 FAM181BA6NEQ2 426 aa10.45□□□□□ -0.74
CCDC39-207ENST00000495817 PATL2C9JE40 543 aaKnown RBP10.45□□□□□ -0.74
CCDC39-207ENST00000495817 BMP4P12644 408 aa10.45□□□□□ -0.74
CCDC39-207ENST00000495817 TYRO3Q06418 890 aa10.45□□□□□ -0.74
CCDC39-207ENST00000495817 B4GALNT3Q6L9W6 998 aa10.45□□□□□ -0.74
CCDC39-207ENST00000495817 AEBP1Q8IUX7 1158 aa10.45□□□□□ -0.74
CCDC39-207ENST00000495817 LRRC4BQ9NT99 713 aa10.45□□□□□ -0.74
CCDC39-207ENST00000495817 SLAIN2Q9P270 581 aa10.45□□□□□ -0.74
CCDC39-207ENST00000495817 STK17AQ9UEE5 414 aa10.45□□□□□ -0.74
CCDC39-207ENST00000495817 LORP23490 312 aaPredicted RBP10.44□□□□□ -0.74
CCDC39-207ENST00000495817 KCNQ4P56696 695 aa10.44□□□□□ -0.74
CCDC39-207ENST00000495817 C11orf91Q3C1V1 193 aa10.44□□□□□ -0.74
CCDC39-207ENST00000495817 C16orf46Q6P387 395 aa10.44□□□□□ -0.74
CCDC39-207ENST00000495817 BTLAQ7Z6A9 289 aa10.44□□□□□ -0.74
CCDC39-207ENST00000495817 ZNF280CQ8ND82 737 aa10.44□□□□□ -0.74
CCDC39-207ENST00000495817 KLRG1Q96E93 195 aa10.44□□□□□ -0.74
CCDC39-207ENST00000495817 CEP63Q96MT8 703 aa10.44□□□□□ -0.74
CCDC39-207ENST00000495817 AVENQ9NQS1 362 aaPredicted RBP10.44□□□□□ -0.74
CCDC39-207ENST00000495817 MARK1Q9P0L2 795 aa10.44□□□□□ -0.74
CCDC39-207ENST00000495817 BRD1O95696 1058 aa10.43□□□□□ -0.74
CCDC39-207ENST00000495817 DGKZQ13574 1117 aa10.43□□□□□ -0.74
CCDC39-207ENST00000495817 BRD7Q9NPI1 651 aa10.43□□□□□ -0.74
CCDC39-207ENST00000495817 GDF2Q9UK05 429 aaPredicted RBP10.43□□□□□ -0.74
CCDC39-207ENST00000495817 ARAFP10398 606 aa10.42□□□□□ -0.74
CCDC39-207ENST00000495817 CD33P20138 364 aa10.42□□□□□ -0.74
CCDC39-207ENST00000495817 SSFA2P28290 1259 aa10.42□□□□□ -0.74
CCDC39-207ENST00000495817 OXCT2Q9BYC2 517 aaPredicted RBP10.42□□□□□ -0.74
CCDC39-207ENST00000495817 KLK14Q9P0G3 267 aa10.42□□□□□ -0.74
CCDC39-207ENST00000495817 EPB42P16452 691 aa10.41□□□□□ -0.74
CCDC39-207ENST00000495817 CTBSQ01459 385 aa10.41□□□□□ -0.74
CCDC39-207ENST00000495817 SVOPQ8N4V2 548 aa10.41□□□□□ -0.74
CCDC39-207ENST00000495817 MKNK1Q9BUB5 465 aa10.41□□□□□ -0.74
CCDC39-207ENST00000495817 BCS1LQ9Y276 419 aa10.41□□□□□ -0.74
CCDC39-207ENST00000495817 MAP3K10Q02779 954 aa10.4□□□□□ -0.74
CCDC39-207ENST00000495817 KCNA1Q09470 495 aa10.4□□□□□ -0.74
CCDC39-207ENST00000495817 COX20Q5RI15 118 aa10.4□□□□□ -0.74
CCDC39-207ENST00000495817 GOLGA6L1Q8N7Z2 621 aa10.4□□□□□ -0.74
CCDC39-207ENST00000495817 DMGDHQ9UI17 866 aaKnown RBP10.4□□□□□ -0.74
CCDC39-207ENST00000495817 HCN2Q9UL51 889 aa10.4□□□□□ -0.74
CCDC39-207ENST00000495817 LRFN2Q9ULH4 789 aa10.4□□□□□ -0.74
CCDC39-207ENST00000495817 ZNF468Q5VIY5 522 aaPredicted RBP10.39□□□□□ -0.75
CCDC39-207ENST00000495817 ZNF385CQ66K41 422 aaPredicted RBP10.39□□□□□ -0.75
CCDC39-207ENST00000495817 SLCO4C1Q6ZQN7 724 aa10.39□□□□□ -0.75
CCDC39-207ENST00000495817 ACDQ96AP0 544 aa10.39□□□□□ -0.75
CCDC39-207ENST00000495817 STRN4Q9NRL3 753 aa10.39□□□□□ -0.75
CCDC39-207ENST00000495817 KCNH4Q9UQ05 1017 aa10.39□□□□□ -0.75
CCDC39-207ENST00000495817 MTMR7Q9Y216 660 aa10.39□□□□□ -0.75
CCDC39-207ENST00000495817 C2CD2LO14523 706 aa10.38□□□□□ -0.75
CCDC39-207ENST00000495817 NEUROD1Q13562 356 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms