RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 CCDC186Q7Z3E2 898 aa11.51□□□□□ -0.57
SYNE1-230ENST00000495090 CCDC112Q8NEF3 446 aa11.51□□□□□ -0.57
SYNE1-230ENST00000495090 ZSWIM6Q9HCJ5 1215 aa11.51□□□□□ -0.57
SYNE1-230ENST00000495090 TECPR2O15040 1411 aa11.51□□□□□ -0.57
SYNE1-230ENST00000495090 HTATSF1O43719 755 aaKnown RBP11.5□□□□□ -0.57
SYNE1-230ENST00000495090 PDCP20941 246 aa11.5□□□□□ -0.57
SYNE1-230ENST00000495090 ZNF75DP51815 510 aa11.5□□□□□ -0.57
SYNE1-230ENST00000495090 FGD1P98174 961 aa11.5□□□□□ -0.57
SYNE1-230ENST00000495090 RUFY2Q8WXA3 655 aa11.5□□□□□ -0.57
SYNE1-230ENST00000495090 NUDT16Q96DE0 195 aaKnown RBP11.5□□□□□ -0.57
SYNE1-230ENST00000495090 LRRFIP2Q9Y608 721 aaKnown RBP11.5□□□□□ -0.57
SYNE1-230ENST00000495090 PEAK1Q9H792 1746 aa11.5□□□□□ -0.57
SYNE1-230ENST00000495090 CASTP20810 708 aaKnown RBP11.5□□□□□ -0.57
SYNE1-230ENST00000495090 SLFNL1Q499Z3 407 aa11.5□□□□□ -0.57
SYNE1-230ENST00000495090 ZNF771Q7L3S4 317 aaPredicted RBP11.5□□□□□ -0.57
SYNE1-230ENST00000495090 KIF18AQ8NI77 898 aa11.5□□□□□ -0.57
SYNE1-230ENST00000495090 KIF1BPQ96EK5 621 aa11.5□□□□□ -0.57
SYNE1-230ENST00000495090 SCAND2PQ9GZW5 306 aaPredicted RBP11.5□□□□□ -0.57
SYNE1-230ENST00000495090 CBX8Q9HC52 389 aa11.5□□□□□ -0.57
SYNE1-230ENST00000495090 PDRG1Q9NUG6 133 aa11.5□□□□□ -0.57
SYNE1-230ENST00000495090 FAM53CQ9NYF3 392 aa11.5□□□□□ -0.57
SYNE1-230ENST00000495090 TTC41PQ6P2S7 1318 aa11.5□□□□□ -0.57
SYNE1-230ENST00000495090 NPHP3Q7Z494 1330 aa11.5□□□□□ -0.57
SYNE1-230ENST00000495090 KDRP35968 1356 aa11.5□□□□□ -0.57
SYNE1-230ENST00000495090 USP31Q70CQ4 1352 aa11.5□□□□□ -0.57
SYNE1-230ENST00000495090 A2ML1A8K2U0 1454 aa11.5□□□□□ -0.57
SYNE1-230ENST00000495090 A0A0U1RQG5 324 aaPredicted RBP11.49□□□□□ -0.57
SYNE1-230ENST00000495090 LARGE1O95461 756 aa11.49□□□□□ -0.57
SYNE1-230ENST00000495090 SLFN14P0C7P3 912 aa11.49□□□□□ -0.57
SYNE1-230ENST00000495090 UBTFL1P0CB47 393 aaPredicted RBP11.49□□□□□ -0.57
SYNE1-230ENST00000495090 SARM1Q6SZW1 724 aa11.49□□□□□ -0.57
SYNE1-230ENST00000495090 TTC6Q86TZ1 520 aa11.49□□□□□ -0.57
SYNE1-230ENST00000495090 CCDC83Q8IWF9 413 aa11.49□□□□□ -0.57
SYNE1-230ENST00000495090 ZNF397Q8NF99 534 aaPredicted RBP11.49□□□□□ -0.57
SYNE1-230ENST00000495090 C16orf45Q96MC5 204 aaPredicted RBP11.49□□□□□ -0.57
SYNE1-230ENST00000495090 TNMDQ9H2S6 317 aa11.49□□□□□ -0.57
SYNE1-230ENST00000495090 KCND1Q9NSA2 647 aa11.49□□□□□ -0.57
SYNE1-230ENST00000495090 BABAM1Q9NWV8 329 aa11.49□□□□□ -0.57
SYNE1-230ENST00000495090 CYP46A1Q9Y6A2 500 aa11.49□□□□□ -0.57
SYNE1-230ENST00000495090 CCDC66A2RUB6 948 aa11.48□□□□□ -0.57
SYNE1-230ENST00000495090 RBM6P78332 1123 aaKnown RBP11.48□□□□□ -0.57
SYNE1-230ENST00000495090 HSP90AB4PQ58FF6 505 aa11.48□□□□□ -0.57
SYNE1-230ENST00000495090 LUZP1Q86V48 1076 aa11.48□□□□□ -0.57
SYNE1-230ENST00000495090 KRT222Q8N1A0 295 aa11.48□□□□□ -0.57
SYNE1-230ENST00000495090 RHPN1Q8TCX5 695 aa11.48□□□□□ -0.57
SYNE1-230ENST00000495090 USP44Q9H0E7 712 aa11.48□□□□□ -0.57
SYNE1-230ENST00000495090 CLSTN2Q9H4D0 955 aa11.48□□□□□ -0.57
SYNE1-230ENST00000495090 NRXN3Q9Y4C0 1643 aa11.48□□□□□ -0.57
SYNE1-230ENST00000495090 CACNB1Q02641 598 aaPredicted RBP11.48□□□□□ -0.57
SYNE1-230ENST00000495090 ST3GAL1Q11201 340 aa11.48□□□□□ -0.57
SYNE1-230ENST00000495090 ANO6Q4KMQ2 910 aa11.48□□□□□ -0.57
SYNE1-230ENST00000495090 GIGYF1O75420 1035 aaPredicted RBP11.47□□□□□ -0.57
SYNE1-230ENST00000495090 GLRX3O76003 335 aaKnown RBP11.47□□□□□ -0.57
SYNE1-230ENST00000495090 LIG1P18858 919 aa11.47□□□□□ -0.57
SYNE1-230ENST00000495090 LRMPQ12912 555 aa11.47□□□□□ -0.57
SYNE1-230ENST00000495090 TERF2Q15554 542 aa11.47□□□□□ -0.57
SYNE1-230ENST00000495090 RNF20Q5VTR2 975 aa11.47□□□□□ -0.57
SYNE1-230ENST00000495090 CEP135Q66GS9 1140 aa11.47□□□□□ -0.57
SYNE1-230ENST00000495090 NUTM1Q86Y26 1132 aa11.47□□□□□ -0.57
SYNE1-230ENST00000495090 TRIM5Q9C035 493 aa11.47□□□□□ -0.57
SYNE1-230ENST00000495090 ALDH8A1Q9H2A2 487 aaPredicted RBP11.47□□□□□ -0.57
SYNE1-230ENST00000495090 IL1RAPL2Q9NP60 686 aa11.47□□□□□ -0.57
SYNE1-230ENST00000495090 FMN2Q9NZ56 1722 aa11.47□□□□□ -0.57
SYNE1-230ENST00000495090 VPS37CA5D8V6 355 aaPredicted RBP11.47□□□□□ -0.57
SYNE1-230ENST00000495090 NPM1P06748 294 aaKnown RBP eCLIP11.47□□□□□ -0.57
SYNE1-230ENST00000495090 TPD52L1Q16890 204 aaPredicted RBP11.47□□□□□ -0.57
SYNE1-230ENST00000495090 DRC7Q8IY82 874 aa11.47□□□□□ -0.57
SYNE1-230ENST00000495090 MRFAP1L1Q96HT8 127 aa11.47□□□□□ -0.57
SYNE1-230ENST00000495090 JAKMIP1Q96N16 626 aaKnown RBP11.47□□□□□ -0.57
SYNE1-230ENST00000495090 TOPAZ1Q8N9V7 1692 aa11.46□□□□□ -0.57
SYNE1-230ENST00000495090 KIF2AO00139 706 aaPredicted RBP11.46□□□□□ -0.58
SYNE1-230ENST00000495090 NECTIN1Q15223 517 aa11.46□□□□□ -0.58
SYNE1-230ENST00000495090 ANKRD1Q15327 319 aa11.46□□□□□ -0.58
SYNE1-230ENST00000495090 ME3Q16798 604 aa11.46□□□□□ -0.58
SYNE1-230ENST00000495090 MTHFSDQ2M296 383 aaKnown RBP11.46□□□□□ -0.58
SYNE1-230ENST00000495090 LARP1BQ659C4 914 aaKnown RBP11.46□□□□□ -0.58
SYNE1-230ENST00000495090 NYAP1Q6ZVC0 841 aa11.46□□□□□ -0.58
SYNE1-230ENST00000495090 ERO1AQ96HE7 468 aa11.46□□□□□ -0.58
SYNE1-230ENST00000495090 DACT1Q9NYF0 836 aa11.46□□□□□ -0.58
SYNE1-230ENST00000495090 CLIP2Q9UDT6 1046 aa11.46□□□□□ -0.58
SYNE1-230ENST00000495090 MAP3K19Q56UN5 1328 aa11.45□□□□□ -0.58
SYNE1-230ENST00000495090 SURF6O75683 361 aaKnown RBP11.45□□□□□ -0.58
SYNE1-230ENST00000495090 RAPGEF3O95398 923 aa11.45□□□□□ -0.58
SYNE1-230ENST00000495090 ZKSCAN1P17029 563 aaPredicted RBP11.45□□□□□ -0.58
SYNE1-230ENST00000495090 ZNF165P49910 485 aa11.45□□□□□ -0.58
SYNE1-230ENST00000495090 CWC27Q6UX04 472 aaKnown RBP11.45□□□□□ -0.58
SYNE1-230ENST00000495090 PPP1R42Q7Z4L9 355 aa11.45□□□□□ -0.58
SYNE1-230ENST00000495090 CACTINQ8WUQ7 758 aaKnown RBP11.45□□□□□ -0.58
SYNE1-230ENST00000495090 SNRKQ9NRH2 765 aa11.45□□□□□ -0.58
SYNE1-230ENST00000495090 MIS18AQ9NYP9 233 aa11.45□□□□□ -0.58
SYNE1-230ENST00000495090 STAG3Q9UJ98 1225 aa11.45□□□□□ -0.58
SYNE1-230ENST00000495090 GOLGA6L4A6NEF3 574 aa11.45□□□□□ -0.58
SYNE1-230ENST00000495090 PSMA5P28066 241 aa11.45□□□□□ -0.58
SYNE1-230ENST00000495090 PDE4CQ08493 712 aa11.45□□□□□ -0.58
SYNE1-230ENST00000495090 LRRC8AQ8IWT6 810 aa11.45□□□□□ -0.58
SYNE1-230ENST00000495090 NRBP1Q9UHY1 535 aa11.45□□□□□ -0.58
SYNE1-230ENST00000495090 SLC20A2Q08357 652 aa11.44□□□□□ -0.58
SYNE1-230ENST00000495090 ADCK5Q3MIX3 580 aa11.44□□□□□ -0.58
SYNE1-230ENST00000495090 HSP90AB2PQ58FF8 381 aa11.44□□□□□ -0.58
SYNE1-230ENST00000495090 CDC37L1Q7L3B6 337 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms