RNA–Protein interactions for RNA: ENST00000494047.5

RFC4-214, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 1,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-214ENST00000494047 CARD10Q9BWT7 1032 aa13.93□□□□□ -0.18
RFC4-214ENST00000494047 ATP6V1DQ9Y5K8 247 aa13.93□□□□□ -0.18
RFC4-214ENST00000494047 RGPD5Q99666 1765 aa13.92□□□□□ -0.18
RFC4-214ENST00000494047 CD2BP2O95400 341 aaKnown RBP13.92□□□□□ -0.18
RFC4-214ENST00000494047 CSB-PGBD3P0DP91 1061 aa13.92□□□□□ -0.18
RFC4-214ENST00000494047 FAM196AQ6ZSG2 479 aa13.92□□□□□ -0.18
RFC4-214ENST00000494047 CNTROBQ8N137 903 aa13.92□□□□□ -0.18
RFC4-214ENST00000494047 FAM184AQ8NB25 1140 aa13.92□□□□□ -0.18
RFC4-214ENST00000494047 EP400Q96L91 3159 aa13.91□□□□□ -0.18
RFC4-214ENST00000494047 WDR33Q9C0J8 1336 aaKnown RBP13.91□□□□□ -0.18
RFC4-214ENST00000494047 USP42Q9H9J4 1324 aaKnown RBP13.91□□□□□ -0.18
RFC4-214ENST00000494047 HIP1O00291 1037 aa13.91□□□□□ -0.18
RFC4-214ENST00000494047 LETM1O95202 739 aaPredicted RBP13.91□□□□□ -0.18
RFC4-214ENST00000494047 HDGFL1Q5TGJ6 251 aa13.91□□□□□ -0.18
RFC4-214ENST00000494047 PARP4Q9UKK3 1724 aaKnown RBP13.91□□□□□ -0.18
RFC4-214ENST00000494047 MSNP26038 577 aaKnown RBP13.9□□□□□ -0.18
RFC4-214ENST00000494047 IP6K1Q92551 441 aa13.9□□□□□ -0.18
RFC4-214ENST00000494047 ERBB3P21860 1342 aa13.89□□□□□ -0.19
RFC4-214ENST00000494047 ALDH1L1O75891 902 aa13.89□□□□□ -0.19
RFC4-214ENST00000494047 TPM2P07951 284 aa13.89□□□□□ -0.19
RFC4-214ENST00000494047 CHMLP26374 656 aa13.89□□□□□ -0.19
RFC4-214ENST00000494047 MTX1Q13505 466 aa13.89□□□□□ -0.19
RFC4-214ENST00000494047 POLA2Q14181 598 aa13.89□□□□□ -0.19
RFC4-214ENST00000494047 MCTP1Q6DN14 999 aa13.89□□□□□ -0.19
RFC4-214ENST00000494047 ZSCAN30Q86W11 494 aa13.89□□□□□ -0.19
RFC4-214ENST00000494047 LMBRD1Q9NUN5 540 aa13.89□□□□□ -0.19
RFC4-214ENST00000494047 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.89□□□□□ -0.19
RFC4-214ENST00000494047 NEK4P51957 841 aa13.88□□□□□ -0.19
RFC4-214ENST00000494047 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.88□□□□□ -0.19
RFC4-214ENST00000494047 RBM42Q9BTD8 480 aaKnown RBP13.88□□□□□ -0.19
RFC4-214ENST00000494047 RAD50Q92878 1312 aa13.88□□□□□ -0.19
RFC4-214ENST00000494047 TRIM6-TRIM34B2RNG4 842 aa13.87□□□□□ -0.19
RFC4-214ENST00000494047 GLRX3O76003 335 aaKnown RBP13.87□□□□□ -0.19
RFC4-214ENST00000494047 BRD1O95696 1058 aa13.87□□□□□ -0.19
RFC4-214ENST00000494047 BAG6P46379 1132 aa13.87□□□□□ -0.19
RFC4-214ENST00000494047 DDB1Q16531 1140 aa13.87□□□□□ -0.19
RFC4-214ENST00000494047 KRT24Q2M2I5 525 aa13.87□□□□□ -0.19
RFC4-214ENST00000494047 ZSCAN23Q3MJ62 389 aa13.87□□□□□ -0.19
RFC4-214ENST00000494047 PLEKHO1Q53GL0 409 aaPredicted RBP13.87□□□□□ -0.19
RFC4-214ENST00000494047 AKAP4Q5JQC9 854 aa13.87□□□□□ -0.19
RFC4-214ENST00000494047 LRSAM1Q6UWE0 723 aa13.87□□□□□ -0.19
RFC4-214ENST00000494047 KIAA1211Q6ZU35 1233 aa13.87□□□□□ -0.19
RFC4-214ENST00000494047 TICAM2Q86XR7 235 aa13.87□□□□□ -0.19
RFC4-214ENST00000494047 C16orf71Q8IYS4 520 aaPredicted RBP13.87□□□□□ -0.19
RFC4-214ENST00000494047 ANKRD24Q8TF21 1146 aa13.87□□□□□ -0.19
RFC4-214ENST00000494047 TMX3Q96JJ7 454 aa13.87□□□□□ -0.19
RFC4-214ENST00000494047 ANO2Q9NQ90 1003 aa13.87□□□□□ -0.19
RFC4-214ENST00000494047 RRAGDQ9NQL2 400 aaPredicted RBP13.87□□□□□ -0.19
RFC4-214ENST00000494047 WNK3Q9BYP7 1800 aa13.86□□□□□ -0.19
RFC4-214ENST00000494047 HSPA4P34932 840 aa13.86□□□□□ -0.19
RFC4-214ENST00000494047 GLIPR1L2Q4G1C9 344 aa13.86□□□□□ -0.19
RFC4-214ENST00000494047 PANK2Q9BZ23 570 aa13.86□□□□□ -0.19
RFC4-214ENST00000494047 ADAMTS7Q9UKP4 1686 aa13.86□□□□□ -0.19
RFC4-214ENST00000494047 EXOC5O00471 708 aa13.85□□□□□ -0.19
RFC4-214ENST00000494047 SMARCA5O60264 1052 aaPredicted RBP13.85□□□□□ -0.19
RFC4-214ENST00000494047 TEFQ10587 303 aa13.85□□□□□ -0.19
RFC4-214ENST00000494047 G2E3Q7L622 706 aa13.85□□□□□ -0.19
RFC4-214ENST00000494047 TMEM87AQ8NBN3 555 aa13.85□□□□□ -0.19
RFC4-214ENST00000494047 OTUD7AQ8TE49 926 aaPredicted RBP13.85□□□□□ -0.19
RFC4-214ENST00000494047 DNAAF4Q8WXU2 420 aa13.85□□□□□ -0.19
RFC4-214ENST00000494047 ZSCAN31Q96LW9 406 aaPredicted RBP13.85□□□□□ -0.19
RFC4-214ENST00000494047 NLRP2Q9NX02 1062 aa13.85□□□□□ -0.19
RFC4-214ENST00000494047 DBF4Q9UBU7 674 aaPredicted RBP13.85□□□□□ -0.19
RFC4-214ENST00000494047 EXOC6BQ9Y2D4 811 aa13.85□□□□□ -0.19
RFC4-214ENST00000494047 LRRFIP2Q9Y608 721 aaKnown RBP13.85□□□□□ -0.19
RFC4-214ENST00000494047 F6X3S4 739 aa13.84□□□□□ -0.19
RFC4-214ENST00000494047 DDX58O95786 925 aaKnown RBP13.84□□□□□ -0.19
RFC4-214ENST00000494047 UVSSAQ2YD98 709 aa13.84□□□□□ -0.19
RFC4-214ENST00000494047 CAVIN1Q6NZI2 390 aaKnown RBP13.84□□□□□ -0.19
RFC4-214ENST00000494047 PDLIM2Q96JY6 352 aa13.84□□□□□ -0.19
RFC4-214ENST00000494047 TM6SF1Q9BZW5 370 aa13.84□□□□□ -0.19
RFC4-214ENST00000494047 USP44Q9H0E7 712 aa13.84□□□□□ -0.19
RFC4-214ENST00000494047 SH2B1Q9NRF2 756 aaPredicted RBP13.84□□□□□ -0.19
RFC4-214ENST00000494047 DISP2A7MBM2 1401 aa13.84□□□□□ -0.19
RFC4-214ENST00000494047 CLASRPQ8N2M8 674 aaKnown RBP13.83□□□□□ -0.19
RFC4-214ENST00000494047 IL17REQ8NFR9 667 aa13.83□□□□□ -0.19
RFC4-214ENST00000494047 RHPN1Q8TCX5 695 aa13.83□□□□□ -0.19
RFC4-214ENST00000494047 RILPL2Q969X0 211 aa13.83□□□□□ -0.19
RFC4-214ENST00000494047 FOXD4L1Q9NU39 408 aa13.83□□□□□ -0.19
RFC4-214ENST00000494047 CCDC39Q9UFE4 941 aa13.83□□□□□ -0.19
RFC4-214ENST00000494047 BCL9O00512 1426 aa13.83□□□□□ -0.2
RFC4-214ENST00000494047 RFX7Q2KHR2 1363 aa13.83□□□□□ -0.2
RFC4-214ENST00000494047 APBB1O00213 710 aa13.83□□□□□ -0.2
RFC4-214ENST00000494047 SGSM2O43147 1006 aa13.83□□□□□ -0.2
RFC4-214ENST00000494047 IL2RBP14784 551 aa13.83□□□□□ -0.2
RFC4-214ENST00000494047 C1orf141Q5JVX7 400 aa13.83□□□□□ -0.2
RFC4-214ENST00000494047 HYPKQ9NX55 129 aa13.83□□□□□ -0.2
RFC4-214ENST00000494047 SIPA1L3O60292 1781 aaPredicted RBP13.82□□□□□ -0.2
RFC4-214ENST00000494047 PNMA6EA0A0J9YXQ4 647 aa13.82□□□□□ -0.2
RFC4-214ENST00000494047 SURF6O75683 361 aaKnown RBP13.82□□□□□ -0.2
RFC4-214ENST00000494047 EIF4A1P60842 406 aaKnown RBP13.82□□□□□ -0.2
RFC4-214ENST00000494047 FAM182BQ5T319 152 aa13.82□□□□□ -0.2
RFC4-214ENST00000494047 GAS2L3Q86XJ1 694 aa13.82□□□□□ -0.2
RFC4-214ENST00000494047 NAP1L5Q96NT1 182 aaPredicted RBP13.82□□□□□ -0.2
RFC4-214ENST00000494047 SRGAP3O43295 1099 aa13.81□□□□□ -0.2
RFC4-214ENST00000494047 RRP9O43818 475 aaKnown RBP13.81□□□□□ -0.2
RFC4-214ENST00000494047 PRPF40AO75400 957 aaKnown RBP13.81□□□□□ -0.2
RFC4-214ENST00000494047 ANKRD1Q15327 319 aa13.81□□□□□ -0.2
RFC4-214ENST00000494047 PPP1R42Q7Z4L9 355 aa13.81□□□□□ -0.2
RFC4-214ENST00000494047 DIAPH3Q9NSV4 1193 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms