RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 CNTNAP1P78357 1384 aa17.7■□□□□ 0.42
HDAC3-213ENST00000492506 PRPF40BQ6NWY9 871 aaKnown RBP17.7■□□□□ 0.42
HDAC3-213ENST00000492506 C7orf43Q8WVR3 580 aa17.7■□□□□ 0.42
HDAC3-213ENST00000492506 CNKSR1Q969H4 720 aa17.7■□□□□ 0.42
HDAC3-213ENST00000492506 FOXN1O15353 648 aa17.69■□□□□ 0.42
HDAC3-213ENST00000492506 PER1O15534 1290 aaPredicted RBP17.69■□□□□ 0.42
HDAC3-213ENST00000492506 A1BGP04217 495 aa17.69■□□□□ 0.42
HDAC3-213ENST00000492506 CNBD1Q8NA66 436 aa17.69■□□□□ 0.42
HDAC3-213ENST00000492506 SETDB2Q96T68 719 aa17.69■□□□□ 0.42
HDAC3-213ENST00000492506 ZNF330Q9Y3S2 320 aaPredicted RBP17.69■□□□□ 0.42
HDAC3-213ENST00000492506 L3MBTL3Q96JM7 780 aaPredicted RBP17.68■□□□□ 0.42
HDAC3-213ENST00000492506 CEMIPQ8WUJ3 1361 aa17.67■□□□□ 0.42
HDAC3-213ENST00000492506 GNAT3A8MTJ3 354 aa17.67■□□□□ 0.42
HDAC3-213ENST00000492506 TEFQ10587 303 aa17.67■□□□□ 0.42
HDAC3-213ENST00000492506 MASTLQ96GX5 879 aa17.67■□□□□ 0.42
HDAC3-213ENST00000492506 KCNQ3O43525 872 aa17.66■□□□□ 0.42
HDAC3-213ENST00000492506 ITGBL1O95965 494 aaPredicted RBP17.66■□□□□ 0.42
HDAC3-213ENST00000492506 SOGA3Q5TF21 947 aa17.66■□□□□ 0.42
HDAC3-213ENST00000492506 LDHDQ86WU2 507 aa17.66■□□□□ 0.42
HDAC3-213ENST00000492506 FMNL2Q96PY5 1086 aa17.66■□□□□ 0.42
HDAC3-213ENST00000492506 TAF1DQ9H5J8 278 aaPredicted RBP17.66■□□□□ 0.42
HDAC3-213ENST00000492506 KIF7Q2M1P5 1343 aa17.66■□□□□ 0.42
HDAC3-213ENST00000492506 IQCA1LA6NCM1 817 aa17.65■□□□□ 0.42
HDAC3-213ENST00000492506 ST5P78524 1137 aa17.65■□□□□ 0.42
HDAC3-213ENST00000492506 PRDM10Q9NQV6 1147 aa17.65■□□□□ 0.42
HDAC3-213ENST00000492506 DZIP3Q86Y13 1208 aaKnown RBP17.64■□□□□ 0.41
HDAC3-213ENST00000492506 GAS2L2Q8NHY3 880 aa17.64■□□□□ 0.41
HDAC3-213ENST00000492506 KLRG2A4D1S0 409 aaPredicted RBP17.63■□□□□ 0.41
HDAC3-213ENST00000492506 VEGFBP49765 207 aa17.63■□□□□ 0.41
HDAC3-213ENST00000492506 CC2D1BQ5T0F9 858 aaKnown RBP17.63■□□□□ 0.41
HDAC3-213ENST00000492506 USP16Q9Y5T5 823 aa17.63■□□□□ 0.41
HDAC3-213ENST00000492506 ZNF541Q9H0D2 1346 aa17.63■□□□□ 0.41
HDAC3-213ENST00000492506 TMEM88BA6NKF7 163 aa17.62■□□□□ 0.41
HDAC3-213ENST00000492506 PIP4K2AP48426 406 aaPredicted RBP17.62■□□□□ 0.41
HDAC3-213ENST00000492506 CCDC93Q567U6 631 aa17.62■□□□□ 0.41
HDAC3-213ENST00000492506 CLEC4GQ6UXB4 293 aa17.62■□□□□ 0.41
HDAC3-213ENST00000492506 CCER1Q8TC90 406 aaPredicted RBP17.62■□□□□ 0.41
HDAC3-213ENST00000492506 PRAMEF22A3QJZ6 481 aa17.61■□□□□ 0.41
HDAC3-213ENST00000492506 NPHP1O15259 732 aa17.61■□□□□ 0.41
HDAC3-213ENST00000492506 NPR1P16066 1061 aa17.61■□□□□ 0.41
HDAC3-213ENST00000492506 FKBP4Q02790 459 aaKnown RBP eCLIP17.61■□□□□ 0.41
HDAC3-213ENST00000492506 OLFM4Q6UX06 510 aa17.61■□□□□ 0.41
HDAC3-213ENST00000492506 PHACTR3Q96KR7 559 aa17.61■□□□□ 0.41
HDAC3-213ENST00000492506 WBP1LQ9NX94 342 aa17.61■□□□□ 0.41
HDAC3-213ENST00000492506 BTBD11A6QL63 1104 aa17.6■□□□□ 0.41
HDAC3-213ENST00000492506 U2SURPO15042 1029 aaKnown RBP17.6■□□□□ 0.41
HDAC3-213ENST00000492506 CTCFP49711 727 aaPredicted RBP17.6■□□□□ 0.41
HDAC3-213ENST00000492506 NBPF5PQ86XG9 351 aaPredicted RBP17.6■□□□□ 0.41
HDAC3-213ENST00000492506 ZNF277Q9NRM2 450 aaPredicted RBP17.6■□□□□ 0.41
HDAC3-213ENST00000492506 SNED1Q8TER0 1413 aa17.6■□□□□ 0.41
HDAC3-213ENST00000492506 NPC1L1Q9UHC9 1359 aa17.59■□□□□ 0.41
HDAC3-213ENST00000492506 ZNF316A6NFI3 1004 aaPredicted RBP17.59■□□□□ 0.41
HDAC3-213ENST00000492506 NPM2Q86SE8 214 aaKnown RBP17.59■□□□□ 0.41
HDAC3-213ENST00000492506 HACL1Q9UJ83 578 aa17.59■□□□□ 0.41
HDAC3-213ENST00000492506 LTBP1Q14766 1721 aa17.58■□□□□ 0.41
HDAC3-213ENST00000492506 NBPF26B4DH59 902 aa17.58■□□□□ 0.4
HDAC3-213ENST00000492506 FZD9O00144 591 aa17.58■□□□□ 0.4
HDAC3-213ENST00000492506 EPHX2P34913 555 aa17.58■□□□□ 0.4
HDAC3-213ENST00000492506 EAPPQ56P03 285 aaPredicted RBP17.58■□□□□ 0.4
HDAC3-213ENST00000492506 NBPF10Q6P3W6 841 aaKnown RBP17.58■□□□□ 0.4
HDAC3-213ENST00000492506 NBPF15Q8N660 670 aa17.58■□□□□ 0.4
HDAC3-213ENST00000492506 NUP98P52948 1817 aa17.58■□□□□ 0.4
HDAC3-213ENST00000492506 COL4A5P29400 1685 aa17.58■□□□□ 0.4
HDAC3-213ENST00000492506 RASSF10A6NK89 507 aa17.57■□□□□ 0.4
HDAC3-213ENST00000492506 THSD7BQ9C0I4 1608 aa17.57■□□□□ 0.4
HDAC3-213ENST00000492506 LAMB4A4D0S4 1761 aa17.56■□□□□ 0.4
HDAC3-213ENST00000492506 RNF123Q5XPI4 1314 aa17.56■□□□□ 0.4
HDAC3-213ENST00000492506 RGL2O15211 777 aa17.56■□□□□ 0.4
HDAC3-213ENST00000492506 LBX1P52954 281 aa17.56■□□□□ 0.4
HDAC3-213ENST00000492506 TPTE2Q6XPS3 522 aa17.56■□□□□ 0.4
HDAC3-213ENST00000492506 RTKN2Q8IZC4 609 aa17.56■□□□□ 0.4
HDAC3-213ENST00000492506 AIDAQ96BJ3 306 aa17.56■□□□□ 0.4
HDAC3-213ENST00000492506 RSPH6AQ9H0K4 717 aa17.56■□□□□ 0.4
HDAC3-213ENST00000492506 ZNF652Q9Y2D9 606 aa17.56■□□□□ 0.4
HDAC3-213ENST00000492506 TRPM7Q96QT4 1865 aa17.56■□□□□ 0.4
HDAC3-213ENST00000492506 SNRPA1P09661 255 aaKnown RBP17.55■□□□□ 0.4
HDAC3-213ENST00000492506 PRKAR2BP31323 418 aa17.55■□□□□ 0.4
HDAC3-213ENST00000492506 IARSP41252 1262 aaKnown RBP17.55■□□□□ 0.4
HDAC3-213ENST00000492506 MAP1SQ66K74 1059 aaPredicted RBP17.55■□□□□ 0.4
HDAC3-213ENST00000492506 PNMA8AQ86V59 439 aaPredicted RBP17.55■□□□□ 0.4
HDAC3-213ENST00000492506 CNTROBQ8N137 903 aa17.55■□□□□ 0.4
HDAC3-213ENST00000492506 NIP7Q9Y221 180 aaKnown RBP eCLIP17.55■□□□□ 0.4
HDAC3-213ENST00000492506 CLEC11AQ9Y240 323 aa17.55■□□□□ 0.4
HDAC3-213ENST00000492506 HSPA8P11142 646 aaKnown RBP17.54■□□□□ 0.4
HDAC3-213ENST00000492506 DEFB115Q30KQ5 88 aa17.54■□□□□ 0.4
HDAC3-213ENST00000492506 SYNE4Q8N205 404 aa17.54■□□□□ 0.4
HDAC3-213ENST00000492506 HLFQ16534 295 aa17.53■□□□□ 0.4
HDAC3-213ENST00000492506 GPC2Q8N158 579 aa17.53■□□□□ 0.4
HDAC3-213ENST00000492506 WDR33Q9C0J8 1336 aaKnown RBP17.52■□□□□ 0.4
HDAC3-213ENST00000492506 ALDH1B1P30837 517 aa17.52■□□□□ 0.4
HDAC3-213ENST00000492506 CRY2Q49AN0 593 aa17.52■□□□□ 0.4
HDAC3-213ENST00000492506 MCM10Q7L590 875 aa17.52■□□□□ 0.4
HDAC3-213ENST00000492506 PSMD1Q99460 953 aa17.52■□□□□ 0.4
HDAC3-213ENST00000492506 DLG5Q8TDM6 1919 aa17.51■□□□□ 0.39
HDAC3-213ENST00000492506 FAM177BA6PVY3 158 aa17.51■□□□□ 0.39
HDAC3-213ENST00000492506 ABCC12Q96J65 1359 aa17.51■□□□□ 0.39
HDAC3-213ENST00000492506 CNGB1Q14028 1251 aaPredicted RBP17.5■□□□□ 0.39
HDAC3-213ENST00000492506 ABHD8Q96I13 439 aa17.5■□□□□ 0.39
HDAC3-213ENST00000492506 DDX21Q9NR30 783 aaKnown RBP eCLIP17.5■□□□□ 0.39
HDAC3-213ENST00000492506 KDM3BQ7LBC6 1761 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms