RNA–Protein interactions for RNA: ENST00000491258.1

PHC3-213, Transcript of polyhomeotic homolog 3, humanhuman

TSL 1 (best)

Gene PHC3, Length 719 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHC3-213ENST00000491258 ELOA3DA6NLF2 546 aaPredicted RBP9.55□□□□□ -0.88
PHC3-213ENST00000491258 ALAS2P22557 587 aa9.55□□□□□ -0.88
PHC3-213ENST00000491258 EPHA4P54764 986 aa9.55□□□□□ -0.88
PHC3-213ENST00000491258 ELOA3BQ3SY89 546 aa9.55□□□□□ -0.88
PHC3-213ENST00000491258 ELOA3Q8NG57 546 aa9.55□□□□□ -0.88
PHC3-213ENST00000491258 SERTM1A2A2V5 107 aa9.54□□□□□ -0.88
PHC3-213ENST00000491258 EML1O00423 815 aa9.54□□□□□ -0.88
PHC3-213ENST00000491258 RAD21O60216 631 aa9.54□□□□□ -0.88
PHC3-213ENST00000491258 SH3PXD2AQ5TCZ1 1133 aa9.54□□□□□ -0.88
PHC3-213ENST00000491258 TRIM50Q86XT4 487 aa9.54□□□□□ -0.88
PHC3-213ENST00000491258 RHPN1Q8TCX5 695 aa9.54□□□□□ -0.88
PHC3-213ENST00000491258 DOC2BQ14184 412 aa9.53□□□□□ -0.88
PHC3-213ENST00000491258 TPCN2Q8NHX9 752 aa9.53□□□□□ -0.88
PHC3-213ENST00000491258 SFSWAPQ12872 951 aaKnown RBP9.52□□□□□ -0.89
PHC3-213ENST00000491258 POM121CA8CG34 1229 aa9.51□□□□□ -0.89
PHC3-213ENST00000491258 SPATA31C1P0DKV0 1188 aa9.51□□□□□ -0.89
PHC3-213ENST00000491258 KIAA1024Q9UPX6 916 aa9.51□□□□□ -0.89
PHC3-213ENST00000491258 CHMP3Q9Y3E7 222 aa9.51□□□□□ -0.89
PHC3-213ENST00000491258 GPC6Q9Y625 555 aaPredicted RBP9.51□□□□□ -0.89
PHC3-213ENST00000491258 GATA4P43694 442 aa9.5□□□□□ -0.89
PHC3-213ENST00000491258 ATP1A2P50993 1020 aa9.5□□□□□ -0.89
PHC3-213ENST00000491258 SLC30A3Q99726 388 aa9.5□□□□□ -0.89
PHC3-213ENST00000491258 USP17L3A6NCW0 530 aa9.49□□□□□ -0.89
PHC3-213ENST00000491258 USP17L4A6NCW7 530 aa9.49□□□□□ -0.89
PHC3-213ENST00000491258 SPDYE3A6NKU9 549 aa9.49□□□□□ -0.89
PHC3-213ENST00000491258 ZBTB7BO15156 539 aaPredicted RBP9.49□□□□□ -0.89
PHC3-213ENST00000491258 SIN3BO75182 1162 aa9.49□□□□□ -0.89
PHC3-213ENST00000491258 PSMA6P60900 246 aaKnown RBP9.49□□□□□ -0.89
PHC3-213ENST00000491258 PRRT3Q5FWE3 981 aa9.49□□□□□ -0.89
PHC3-213ENST00000491258 CCDC102BQ68D86 513 aa9.49□□□□□ -0.89
PHC3-213ENST00000491258 USP17L2Q6R6M4 530 aa9.49□□□□□ -0.89
PHC3-213ENST00000491258 USP17L1Q7RTZ2 530 aa9.49□□□□□ -0.89
PHC3-213ENST00000491258 TSPAN10Q9H1Z9 355 aaPredicted RBP9.49□□□□□ -0.89
PHC3-213ENST00000491258 SEMA6BQ9H3T3 888 aa9.49□□□□□ -0.89
PHC3-213ENST00000491258 HCN4Q9Y3Q4 1203 aa9.49□□□□□ -0.89
PHC3-213ENST00000491258 M0R082 166 aa9.48□□□□□ -0.89
PHC3-213ENST00000491258 UBTFP17480 764 aaKnown RBP9.48□□□□□ -0.89
PHC3-213ENST00000491258 RAB44Q7Z6P3 723 aaPredicted RBP9.48□□□□□ -0.89
PHC3-213ENST00000491258 ZNF417Q8TAU3 575 aa9.48□□□□□ -0.89
PHC3-213ENST00000491258 ADAMTS19Q8TE59 1207 aa9.48□□□□□ -0.89
PHC3-213ENST00000491258 C7orf43Q8WVR3 580 aa9.48□□□□□ -0.89
PHC3-213ENST00000491258 HSH2DQ96JZ2 352 aa9.48□□□□□ -0.89
PHC3-213ENST00000491258 CEP63Q96MT8 703 aa9.48□□□□□ -0.89
PHC3-213ENST00000491258 ZNF587Q96SQ5 575 aaPredicted RBP9.48□□□□□ -0.89
PHC3-213ENST00000491258 CLDN10P78369 228 aa9.47□□□□□ -0.89
PHC3-213ENST00000491258 SPEM2Q0P670 501 aa9.47□□□□□ -0.89
PHC3-213ENST00000491258 NEUROD1Q13562 356 aa9.47□□□□□ -0.89
PHC3-213ENST00000491258 PLEKHM2Q8IWE5 1019 aa9.47□□□□□ -0.89
PHC3-213ENST00000491258 MDFIQ99750 246 aa9.47□□□□□ -0.89
PHC3-213ENST00000491258 PHACTR1Q9C0D0 580 aa9.47□□□□□ -0.89
PHC3-213ENST00000491258 BRD7Q9NPI1 651 aa9.47□□□□□ -0.89
PHC3-213ENST00000491258 ADARB2-AS1A8MUL3 147 aa9.46□□□□□ -0.9
PHC3-213ENST00000491258 APBA3O96018 575 aa9.46□□□□□ -0.9
PHC3-213ENST00000491258 HDGFL1Q5TGJ6 251 aa9.46□□□□□ -0.9
PHC3-213ENST00000491258 OGFOD1Q8N543 542 aa9.46□□□□□ -0.9
PHC3-213ENST00000491258 SFI1A8K8P3 1242 aa9.45□□□□□ -0.9
PHC3-213ENST00000491258 FAM229AH3BQW9 127 aa9.45□□□□□ -0.9
PHC3-213ENST00000491258 ATP9BO43861 1147 aa9.45□□□□□ -0.9
PHC3-213ENST00000491258 ALBP02768 609 aa9.45□□□□□ -0.9
PHC3-213ENST00000491258 ITGB7P26010 798 aa9.45□□□□□ -0.9
PHC3-213ENST00000491258 ADH7P40394 386 aa9.45□□□□□ -0.9
PHC3-213ENST00000491258 C1orf53Q5VUE5 145 aa9.45□□□□□ -0.9
PHC3-213ENST00000491258 TNFRSF25Q93038 417 aa9.45□□□□□ -0.9
PHC3-213ENST00000491258 UCN2Q96RP3 112 aa9.45□□□□□ -0.9
PHC3-213ENST00000491258 ANKIB1Q9P2G1 1089 aa9.45□□□□□ -0.9
PHC3-213ENST00000491258 PRKCSHP14314 528 aaPredicted RBP9.44□□□□□ -0.9
PHC3-213ENST00000491258 C8orf86Q6ZUL3 223 aa9.44□□□□□ -0.9
PHC3-213ENST00000491258 KRTAP1-3Q8IUG1 177 aa9.44□□□□□ -0.9
PHC3-213ENST00000491258 ZNF594Q96JF6 807 aaPredicted RBP9.44□□□□□ -0.9
PHC3-213ENST00000491258 MKRN1Q9UHC7 482 aaKnown RBP9.44□□□□□ -0.9
PHC3-213ENST00000491258 STARD13Q9Y3M8 1113 aa9.44□□□□□ -0.9
PHC3-213ENST00000491258 RBM19Q9Y4C8 960 aaKnown RBP9.44□□□□□ -0.9
PHC3-213ENST00000491258 PALM3A6NDB9 673 aaPredicted RBP9.43□□□□□ -0.9
PHC3-213ENST00000491258 PPP1R12BO60237 982 aaPredicted RBP9.43□□□□□ -0.9
PHC3-213ENST00000491258 MICALL1Q8N3F8 863 aa9.43□□□□□ -0.9
PHC3-213ENST00000491258 LARGE2Q8N3Y3 721 aa9.43□□□□□ -0.9
PHC3-213ENST00000491258 TSEN2Q8NCE0 465 aaKnown RBP9.43□□□□□ -0.9
PHC3-213ENST00000491258 ZNF280CQ8ND82 737 aa9.43□□□□□ -0.9
PHC3-213ENST00000491258 KCNH4Q9UQ05 1017 aa9.43□□□□□ -0.9
PHC3-213ENST00000491258 HIRAP54198 1017 aaPredicted RBP9.42□□□□□ -0.9
PHC3-213ENST00000491258 TYRO3Q06418 890 aa9.42□□□□□ -0.9
PHC3-213ENST00000491258 TBC1D8BQ0IIM8 1120 aa9.42□□□□□ -0.9
PHC3-213ENST00000491258 FLIIQ13045 1269 aa9.42□□□□□ -0.9
PHC3-213ENST00000491258 TRIM28Q13263 835 aaKnown RBP9.42□□□□□ -0.9
PHC3-213ENST00000491258 SUSD3Q96L08 255 aa9.42□□□□□ -0.9
PHC3-213ENST00000491258 M0R2N6 131 aa9.41□□□□□ -0.9
PHC3-213ENST00000491258 BHMTQ93088 406 aa9.41□□□□□ -0.9
PHC3-213ENST00000491258 PRDM6Q9NQX0 595 aa9.41□□□□□ -0.9
PHC3-213ENST00000491258 COL9A3Q14050 684 aaPredicted RBP9.4□□□□□ -0.9
PHC3-213ENST00000491258 KCNQ4P56696 695 aa9.39□□□□□ -0.91
PHC3-213ENST00000491258 ZMYM1Q5SVZ6 1142 aa9.39□□□□□ -0.91
PHC3-213ENST00000491258 POTEAQ6S8J7 498 aa9.39□□□□□ -0.91
PHC3-213ENST00000491258 ALDH16A1Q8IZ83 802 aa9.39□□□□□ -0.91
PHC3-213ENST00000491258 SIX5Q8N196 739 aa9.39□□□□□ -0.91
PHC3-213ENST00000491258 NGLY1Q96IV0 654 aa9.39□□□□□ -0.91
PHC3-213ENST00000491258 NACC1Q96RE7 527 aa9.39□□□□□ -0.91
PHC3-213ENST00000491258 IGFLR1Q9H665 355 aa9.39□□□□□ -0.91
PHC3-213ENST00000491258 NID1P14543 1247 aa9.38□□□□□ -0.91
PHC3-213ENST00000491258 GRIK4Q16099 956 aa9.38□□□□□ -0.91
PHC3-213ENST00000491258 RSPO4Q2I0M5 234 aaPredicted RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms