RNA–Protein interactions for RNA: ENST00000490690.1

SHROOM3-209, Transcript of shroom family member 3, humanhuman

TSL 4

Gene SHROOM3, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-209ENST00000490690 AMIGO3Q86WK7 504 aa25.33■■□□□ 1.65
SHROOM3-209ENST00000490690 CAMTA2O94983 1202 aa25.32■■□□□ 1.64
SHROOM3-209ENST00000490690 USPL1Q5W0Q7 1092 aa25.32■■□□□ 1.64
SHROOM3-209ENST00000490690 SSH1Q8WYL5 1049 aa25.32■■□□□ 1.64
SHROOM3-209ENST00000490690 GYS1P13807 737 aa25.31■■□□□ 1.64
SHROOM3-209ENST00000490690 POLD1P28340 1107 aa25.31■■□□□ 1.64
SHROOM3-209ENST00000490690 RIC3Q7Z5B4 369 aa25.31■■□□□ 1.64
SHROOM3-209ENST00000490690 TUBGCP6Q96RT7 1819 aa25.3■■□□□ 1.64
SHROOM3-209ENST00000490690 IPO8O15397 1037 aaKnown RBP25.3■■□□□ 1.64
SHROOM3-209ENST00000490690 FKBP5Q13451 457 aaPredicted RBP25.3■■□□□ 1.64
SHROOM3-209ENST00000490690 GIGYF2Q6Y7W6 1299 aaKnown RBP25.3■■□□□ 1.64
SHROOM3-209ENST00000490690 MRPL50Q8N5N7 158 aaKnown RBP25.3■■□□□ 1.64
SHROOM3-209ENST00000490690 KSR2Q6VAB6 950 aa25.29■■□□□ 1.64
SHROOM3-209ENST00000490690 TTLL7Q6ZT98 887 aa25.29■■□□□ 1.64
SHROOM3-209ENST00000490690 PHAXQ9H814 394 aaKnown RBP25.29■■□□□ 1.64
SHROOM3-209ENST00000490690 TCERG1O14776 1098 aaKnown RBP25.28■■□□□ 1.64
SHROOM3-209ENST00000490690 NEXNQ0ZGT2 675 aa25.28■■□□□ 1.64
SHROOM3-209ENST00000490690 ZBTB3Q9H5J0 574 aa25.28■■□□□ 1.64
SHROOM3-209ENST00000490690 SPON1Q9HCB6 807 aa25.28■■□□□ 1.64
SHROOM3-209ENST00000490690 SRP68Q9UHB9 627 aaKnown RBP25.28■■□□□ 1.64
SHROOM3-209ENST00000490690 C4AP0C0L4 1744 aa25.28■■□□□ 1.64
SHROOM3-209ENST00000490690 CASZ1Q86V15 1759 aa25.28■■□□□ 1.64
SHROOM3-209ENST00000490690 SCN7AQ01118 1682 aa25.27■■□□□ 1.64
SHROOM3-209ENST00000490690 ARHGAP45Q92619 1136 aa25.27■■□□□ 1.64
SHROOM3-209ENST00000490690 ATP10DQ9P241 1426 aa25.27■■□□□ 1.64
SHROOM3-209ENST00000490690 PARP10Q53GL7 1025 aa25.26■■□□□ 1.63
SHROOM3-209ENST00000490690 SMIM5Q71RC9 77 aa25.26■■□□□ 1.63
SHROOM3-209ENST00000490690 SETDB2Q96T68 719 aa25.26■■□□□ 1.63
SHROOM3-209ENST00000490690 API5Q9BZZ5 524 aaKnown RBP25.26■■□□□ 1.63
SHROOM3-209ENST00000490690 RCAN3Q9UKA8 241 aa25.26■■□□□ 1.63
SHROOM3-209ENST00000490690 CARMIL3Q8ND23 1372 aa25.24■■□□□ 1.63
SHROOM3-209ENST00000490690 PI4KAP2A4QPH2 592 aa25.24■■□□□ 1.63
SHROOM3-209ENST00000490690 ZBTB7AO95365 584 aa25.24■■□□□ 1.63
SHROOM3-209ENST00000490690 FKBP8Q14318 412 aa25.24■■□□□ 1.63
SHROOM3-209ENST00000490690 PI4KAP1Q8N8J0 262 aa25.24■■□□□ 1.63
SHROOM3-209ENST00000490690 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.24■■□□□ 1.63
SHROOM3-209ENST00000490690 BCL2L13Q9BXK5 485 aa25.24■■□□□ 1.63
SHROOM3-209ENST00000490690 PARP3Q9Y6F1 533 aa25.24■■□□□ 1.63
SHROOM3-209ENST00000490690 TCIRG1Q13488 830 aa25.23■■□□□ 1.63
SHROOM3-209ENST00000490690 DNAAF4Q8WXU2 420 aa25.23■■□□□ 1.63
SHROOM3-209ENST00000490690 METTL22Q9BUU2 404 aaPredicted RBP25.23■■□□□ 1.63
SHROOM3-209ENST00000490690 BCL2L12Q9HB09 334 aa25.23■■□□□ 1.63
SHROOM3-209ENST00000490690 NIP7Q9Y221 180 aaKnown RBP eCLIP25.23■■□□□ 1.63
SHROOM3-209ENST00000490690 BCORQ6W2J9 1755 aa25.23■■□□□ 1.63
SHROOM3-209ENST00000490690 RNF123Q5XPI4 1314 aa25.22■■□□□ 1.63
SHROOM3-209ENST00000490690 MS4A1P11836 297 aa25.22■■□□□ 1.63
SHROOM3-209ENST00000490690 G2E3Q7L622 706 aa25.22■■□□□ 1.63
SHROOM3-209ENST00000490690 PDGFDQ9GZP0 370 aaPredicted RBP25.22■■□□□ 1.63
SHROOM3-209ENST00000490690 NYXQ9GZU5 481 aa25.22■■□□□ 1.63
SHROOM3-209ENST00000490690 MAP3K2Q9Y2U5 619 aa25.22■■□□□ 1.63
SHROOM3-209ENST00000490690 TRIM28Q13263 835 aaKnown RBP25.21■■□□□ 1.63
SHROOM3-209ENST00000490690 HLFQ16534 295 aa25.21■■□□□ 1.63
SHROOM3-209ENST00000490690 PPP1R42Q7Z4L9 355 aa25.21■■□□□ 1.63
SHROOM3-209ENST00000490690 IBTKQ9P2D0 1353 aaPredicted RBP25.2■■□□□ 1.63
SHROOM3-209ENST00000490690 MMP10P09238 476 aa25.2■■□□□ 1.62
SHROOM3-209ENST00000490690 TM4SF1P30408 202 aa25.2■■□□□ 1.62
SHROOM3-209ENST00000490690 HSP90B1P14625 803 aaKnown RBP25.19■■□□□ 1.62
SHROOM3-209ENST00000490690 NFIXQ14938 502 aa25.19■■□□□ 1.62
SHROOM3-209ENST00000490690 ZKSCAN2Q63HK3 967 aa25.19■■□□□ 1.62
SHROOM3-209ENST00000490690 TBC1D9BQ66K14 1250 aa25.19■■□□□ 1.62
SHROOM3-209ENST00000490690 MSL1Q68DK7 614 aa25.19■■□□□ 1.62
SHROOM3-209ENST00000490690 ZNF34Q8IZ26 560 aa25.19■■□□□ 1.62
SHROOM3-209ENST00000490690 NOB1Q9ULX3 412 aaKnown RBP25.19■■□□□ 1.62
SHROOM3-209ENST00000490690 ADCY9O60503 1353 aa25.18■■□□□ 1.62
SHROOM3-209ENST00000490690 NPHP1O15259 732 aa25.18■■□□□ 1.62
SHROOM3-209ENST00000490690 TPTE2Q6XPS3 522 aa25.18■■□□□ 1.62
SHROOM3-209ENST00000490690 CCDC191Q8NCU4 936 aa25.18■■□□□ 1.62
SHROOM3-209ENST00000490690 ATF5Q9Y2D1 282 aaPredicted RBP25.18■■□□□ 1.62
SHROOM3-209ENST00000490690 PXDNLA1KZ92 1463 aa25.17■■□□□ 1.62
SHROOM3-209ENST00000490690 BCAR3O75815 825 aa25.17■■□□□ 1.62
SHROOM3-209ENST00000490690 BICDL1Q6ZP65 573 aa25.17■■□□□ 1.62
SHROOM3-209ENST00000490690 LINS1Q8NG48 757 aa25.17■■□□□ 1.62
SHROOM3-209ENST00000490690 ISCA1Q9BUE6 129 aa25.17■■□□□ 1.62
SHROOM3-209ENST00000490690 ATF7IPQ6VMQ6 1270 aa25.16■■□□□ 1.62
SHROOM3-209ENST00000490690 NBPF5PQ86XG9 351 aaPredicted RBP25.16■■□□□ 1.62
SHROOM3-209ENST00000490690 FRAT1Q92837 279 aaPredicted RBP25.16■■□□□ 1.62
SHROOM3-209ENST00000490690 MYD88Q99836 296 aa25.16■■□□□ 1.62
SHROOM3-209ENST00000490690 POLRMTO00411 1230 aaKnown RBP25.15■■□□□ 1.62
SHROOM3-209ENST00000490690 SERPINB2P05120 415 aa25.15■■□□□ 1.62
SHROOM3-209ENST00000490690 CCT4P50991 539 aaKnown RBP25.15■■□□□ 1.62
SHROOM3-209ENST00000490690 CWC25Q9NXE8 425 aaPredicted RBP25.15■■□□□ 1.62
SHROOM3-209ENST00000490690 ALDH1L1O75891 902 aa25.14■■□□□ 1.62
SHROOM3-209ENST00000490690 GTF2E1P29083 439 aaPredicted RBP25.14■■□□□ 1.62
SHROOM3-209ENST00000490690 ST5P78524 1137 aa25.14■■□□□ 1.62
SHROOM3-209ENST00000490690 CNBD1Q8NA66 436 aa25.14■■□□□ 1.62
SHROOM3-209ENST00000490690 UTP14AQ9BVJ6 771 aaKnown RBP25.14■■□□□ 1.62
SHROOM3-209ENST00000490690 SRCIN1Q9C0H9 1055 aa25.14■■□□□ 1.62
SHROOM3-209ENST00000490690 COL24A1Q17RW2 1714 aa25.13■■□□□ 1.61
SHROOM3-209ENST00000490690 GPTP24298 496 aa25.13■■□□□ 1.61
SHROOM3-209ENST00000490690 NLRP10Q86W26 655 aa25.13■■□□□ 1.61
SHROOM3-209ENST00000490690 FTSJ3Q8IY81 847 aaKnown RBP25.13■■□□□ 1.61
SHROOM3-209ENST00000490690 SGIP1Q9BQI5 828 aa25.13■■□□□ 1.61
SHROOM3-209ENST00000490690 PDZRN3Q9UPQ7 1066 aa25.13■■□□□ 1.61
SHROOM3-209ENST00000490690 PTGER2P43116 358 aa25.12■■□□□ 1.61
SHROOM3-209ENST00000490690 SLC4A10Q6U841 1118 aa25.12■■□□□ 1.61
SHROOM3-209ENST00000490690 PPP1R1BQ9UD71 204 aaPredicted RBP25.12■■□□□ 1.61
SHROOM3-209ENST00000490690 ARFGEF2Q9Y6D5 1785 aa25.12■■□□□ 1.61
SHROOM3-209ENST00000490690 NUP98P52948 1817 aa25.12■■□□□ 1.61
SHROOM3-209ENST00000490690 F6X3S4 739 aa25.11■■□□□ 1.61
SHROOM3-209ENST00000490690 DDR1Q08345 913 aa25.11■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms