RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 ZNF219Q9P2Y4 722 aaPredicted RBP16.55■□□□□ 0.24
CPSF3-204ENST00000489403 NPHP1O15259 732 aa16.54■□□□□ 0.24
CPSF3-204ENST00000489403 SNRPA1P09661 255 aaKnown RBP16.54■□□□□ 0.24
CPSF3-204ENST00000489403 SMC1BQ8NDV3 1235 aa16.54■□□□□ 0.24
CPSF3-204ENST00000489403 LAMB4A4D0S4 1761 aa16.54■□□□□ 0.24
CPSF3-204ENST00000489403 DLG5Q8TDM6 1919 aa16.53■□□□□ 0.24
CPSF3-204ENST00000489403 ST5P78524 1137 aa16.53■□□□□ 0.24
CPSF3-204ENST00000489403 HTATSF1O43719 755 aaKnown RBP16.52■□□□□ 0.24
CPSF3-204ENST00000489403 SRGNP10124 158 aa16.52■□□□□ 0.24
CPSF3-204ENST00000489403 VEGFAP15692 232 aaPredicted RBP16.52■□□□□ 0.24
CPSF3-204ENST00000489403 STYK1Q6J9G0 422 aa16.52■□□□□ 0.24
CPSF3-204ENST00000489403 CLEC4GQ6UXB4 293 aa16.52■□□□□ 0.24
CPSF3-204ENST00000489403 KLRG1Q96E93 195 aa16.52■□□□□ 0.24
CPSF3-204ENST00000489403 LTBP3Q9NS15 1303 aa16.51■□□□□ 0.23
CPSF3-204ENST00000489403 NBPF26B4DH59 902 aa16.51■□□□□ 0.23
CPSF3-204ENST00000489403 NBPF10Q6P3W6 841 aaKnown RBP16.51■□□□□ 0.23
CPSF3-204ENST00000489403 NBPF15Q8N660 670 aa16.51■□□□□ 0.23
CPSF3-204ENST00000489403 CNKSR1Q969H4 720 aa16.51■□□□□ 0.23
CPSF3-204ENST00000489403 MASTLQ96GX5 879 aa16.51■□□□□ 0.23
CPSF3-204ENST00000489403 KDM3BQ7LBC6 1761 aa16.51■□□□□ 0.23
CPSF3-204ENST00000489403 POTECB2RU33 542 aa16.5■□□□□ 0.23
CPSF3-204ENST00000489403 ERFEQ4G0M1 354 aa16.5■□□□□ 0.23
CPSF3-204ENST00000489403 PRPF40BQ6NWY9 871 aaKnown RBP16.5■□□□□ 0.23
CPSF3-204ENST00000489403 NBPF5PQ86XG9 351 aaPredicted RBP16.5■□□□□ 0.23
CPSF3-204ENST00000489403 TAOK3Q9H2K8 898 aa16.5■□□□□ 0.23
CPSF3-204ENST00000489403 ZNF652Q9Y2D9 606 aa16.5■□□□□ 0.23
CPSF3-204ENST00000489403 TAF7Q15545 349 aaPredicted RBP16.49■□□□□ 0.23
CPSF3-204ENST00000489403 JMYQ8N9B5 988 aa16.49■□□□□ 0.23
CPSF3-204ENST00000489403 DPY19L2Q6NUT2 758 aa16.48■□□□□ 0.23
CPSF3-204ENST00000489403 MIS18AQ9NYP9 233 aa16.48■□□□□ 0.23
CPSF3-204ENST00000489403 RGL2O15211 777 aa16.47■□□□□ 0.23
CPSF3-204ENST00000489403 SOGA3Q5TF21 947 aa16.47■□□□□ 0.23
CPSF3-204ENST00000489403 PLEKHF1Q96S99 279 aa16.47■□□□□ 0.23
CPSF3-204ENST00000489403 NIP7Q9Y221 180 aaKnown RBP eCLIP16.47■□□□□ 0.23
CPSF3-204ENST00000489403 HLFQ16534 295 aa16.46■□□□□ 0.23
CPSF3-204ENST00000489403 C7orf43Q8WVR3 580 aa16.46■□□□□ 0.23
CPSF3-204ENST00000489403 KLRG2A4D1S0 409 aaPredicted RBP16.45■□□□□ 0.22
CPSF3-204ENST00000489403 NEFMP07197 916 aa16.45■□□□□ 0.22
CPSF3-204ENST00000489403 NPR1P16066 1061 aa16.45■□□□□ 0.22
CPSF3-204ENST00000489403 TPTE2Q6XPS3 522 aa16.45■□□□□ 0.22
CPSF3-204ENST00000489403 NUP98P52948 1817 aa16.45■□□□□ 0.22
CPSF3-204ENST00000489403 FAM177BA6PVY3 158 aa16.44■□□□□ 0.22
CPSF3-204ENST00000489403 DDNO94850 711 aaPredicted RBP16.44■□□□□ 0.22
CPSF3-204ENST00000489403 CCDC93Q567U6 631 aa16.44■□□□□ 0.22
CPSF3-204ENST00000489403 PNISRQ8TF01 805 aaKnown RBP16.44■□□□□ 0.22
CPSF3-204ENST00000489403 NFE2L2Q16236 605 aa16.43■□□□□ 0.22
CPSF3-204ENST00000489403 THUMPD2Q9BTF0 503 aaKnown RBP16.43■□□□□ 0.22
CPSF3-204ENST00000489403 ABCC12Q96J65 1359 aa16.42■□□□□ 0.22
CPSF3-204ENST00000489403 EIF4A1P60842 406 aaKnown RBP16.42■□□□□ 0.22
CPSF3-204ENST00000489403 OLFM4Q6UX06 510 aa16.42■□□□□ 0.22
CPSF3-204ENST00000489403 NGEFQ8N5V2 710 aa16.42■□□□□ 0.22
CPSF3-204ENST00000489403 PCNTO95613 3336 aa16.42■□□□□ 0.22
CPSF3-204ENST00000489403 POTEIP0CG38 1075 aa16.41■□□□□ 0.22
CPSF3-204ENST00000489403 POTEJP0CG39 1038 aa16.41■□□□□ 0.22
CPSF3-204ENST00000489403 FKBP4Q02790 459 aaKnown RBP eCLIP16.41■□□□□ 0.22
CPSF3-204ENST00000489403 MAP3K15Q6ZN16 1313 aa16.41■□□□□ 0.22
CPSF3-204ENST00000489403 SCN4AP35499 1836 aa16.4■□□□□ 0.22
CPSF3-204ENST00000489403 ERVV-1B6SEH8 477 aa16.4■□□□□ 0.22
CPSF3-204ENST00000489403 TTLL7Q6ZT98 887 aa16.4■□□□□ 0.22
CPSF3-204ENST00000489403 ZNF277Q9NRM2 450 aaPredicted RBP16.4■□□□□ 0.22
CPSF3-204ENST00000489403 SNED1Q8TER0 1413 aa16.39■□□□□ 0.21
CPSF3-204ENST00000489403 MYL6BP14649 208 aa16.39■□□□□ 0.21
CPSF3-204ENST00000489403 GTF2E1P29083 439 aaPredicted RBP16.39■□□□□ 0.21
CPSF3-204ENST00000489403 CRY2Q49AN0 593 aa16.39■□□□□ 0.21
CPSF3-204ENST00000489403 CHADLQ6NUI6 762 aa16.39■□□□□ 0.21
CPSF3-204ENST00000489403 NUTM1Q86Y26 1132 aa16.39■□□□□ 0.21
CPSF3-204ENST00000489403 L3MBTL3Q96JM7 780 aaPredicted RBP16.39■□□□□ 0.21
CPSF3-204ENST00000489403 NYXQ9GZU5 481 aa16.39■□□□□ 0.21
CPSF3-204ENST00000489403 RRP7AQ9Y3A4 280 aaKnown RBP16.39■□□□□ 0.21
CPSF3-204ENST00000489403 UBN2Q6ZU65 1347 aa16.39■□□□□ 0.21
CPSF3-204ENST00000489403 ZNF541Q9H0D2 1346 aa16.39■□□□□ 0.21
CPSF3-204ENST00000489403 MAPK8IP3Q9UPT6 1336 aa16.39■□□□□ 0.21
CPSF3-204ENST00000489403 ALDH1B1P30837 517 aa16.38■□□□□ 0.21
CPSF3-204ENST00000489403 COL13A1Q5TAT6 717 aaPredicted RBP16.38■□□□□ 0.21
CPSF3-204ENST00000489403 KIF6Q6ZMV9 814 aa16.38■□□□□ 0.21
CPSF3-204ENST00000489403 RTKN2Q8IZC4 609 aa16.38■□□□□ 0.21
CPSF3-204ENST00000489403 IBTKQ9P2D0 1353 aaPredicted RBP16.38■□□□□ 0.21
CPSF3-204ENST00000489403 RIC1Q4ADV7 1423 aa16.37■□□□□ 0.21
CPSF3-204ENST00000489403 IQCA1LA6NCM1 817 aa16.37■□□□□ 0.21
CPSF3-204ENST00000489403 PNNQ9H307 717 aaKnown RBP16.37■□□□□ 0.21
CPSF3-204ENST00000489403 ZBTB3Q9H5J0 574 aa16.37■□□□□ 0.21
CPSF3-204ENST00000489403 GPTP24298 496 aa16.36■□□□□ 0.21
CPSF3-204ENST00000489403 TAF1DQ9H5J8 278 aaPredicted RBP16.36■□□□□ 0.21
CPSF3-204ENST00000489403 ADAMTSL1Q8N6G6 1762 aa16.36■□□□□ 0.21
CPSF3-204ENST00000489403 HSPA1AP0DMV8 641 aaKnown RBP16.35■□□□□ 0.21
CPSF3-204ENST00000489403 HSPA1BP0DMV9 641 aaKnown RBP16.35■□□□□ 0.21
CPSF3-204ENST00000489403 IARSP41252 1262 aaKnown RBP16.35■□□□□ 0.21
CPSF3-204ENST00000489403 SUSD4Q5VX71 490 aa16.35■□□□□ 0.21
CPSF3-204ENST00000489403 SYNE4Q8N205 404 aa16.35■□□□□ 0.21
CPSF3-204ENST00000489403 CREBZFQ9NS37 354 aa16.35■□□□□ 0.21
CPSF3-204ENST00000489403 TSPYL4Q9UJ04 414 aa16.35■□□□□ 0.21
CPSF3-204ENST00000489403 ERBB4Q15303 1308 aa16.35■□□□□ 0.21
CPSF3-204ENST00000489403 FZD9O00144 591 aa16.34■□□□□ 0.21
CPSF3-204ENST00000489403 NTSR2O95665 410 aa16.34■□□□□ 0.21
CPSF3-204ENST00000489403 GIGYF2Q6Y7W6 1299 aaKnown RBP16.34■□□□□ 0.21
CPSF3-204ENST00000489403 LRP10Q7Z4F1 713 aa16.34■□□□□ 0.21
CPSF3-204ENST00000489403 LDHDQ86WU2 507 aa16.34■□□□□ 0.21
CPSF3-204ENST00000489403 ZNF34Q8IZ26 560 aa16.34■□□□□ 0.21
CPSF3-204ENST00000489403 PSMD1Q99460 953 aa16.34■□□□□ 0.21
CPSF3-204ENST00000489403 COL4A5P29400 1685 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms