RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 UTYO14607 1347 aa14.46□□□□□ -0.09
C9orf3-220ENST00000489318 CNTNAP4Q9C0A0 1308 aa14.46□□□□□ -0.09
C9orf3-220ENST00000489318 IGHDP01880 384 aa14.46□□□□□ -0.09
C9orf3-220ENST00000489318 GNAI3P08754 354 aa14.46□□□□□ -0.09
C9orf3-220ENST00000489318 RXRBP28702 533 aa14.46□□□□□ -0.09
C9orf3-220ENST00000489318 ATP6V1AP38606 617 aa14.46□□□□□ -0.09
C9orf3-220ENST00000489318 IL6STP40189 918 aaPredicted RBP14.46□□□□□ -0.09
C9orf3-220ENST00000489318 FAM182BQ5T319 152 aa14.46□□□□□ -0.09
C9orf3-220ENST00000489318 ANKRD13DQ6ZTN6 518 aa14.46□□□□□ -0.09
C9orf3-220ENST00000489318 ZBTB1Q9Y2K1 713 aa14.46□□□□□ -0.09
C9orf3-220ENST00000489318 C4AP0C0L4 1744 aa14.46□□□□□ -0.1
C9orf3-220ENST00000489318 AIMP1Q12904 312 aaKnown RBP14.45□□□□□ -0.1
C9orf3-220ENST00000489318 USP44Q9H0E7 712 aa14.45□□□□□ -0.1
C9orf3-220ENST00000489318 RWDD1Q9H446 243 aaPredicted RBP14.45□□□□□ -0.1
C9orf3-220ENST00000489318 CCDC87Q9NVE4 849 aa14.45□□□□□ -0.1
C9orf3-220ENST00000489318 COL15A1P39059 1388 aa14.45□□□□□ -0.1
C9orf3-220ENST00000489318 IGKV5-2P06315 115 aa14.44□□□□□ -0.1
C9orf3-220ENST00000489318 INTS5Q6P9B9 1019 aaKnown RBP14.44□□□□□ -0.1
C9orf3-220ENST00000489318 TTLL7Q6ZT98 887 aa14.44□□□□□ -0.1
C9orf3-220ENST00000489318 RIC3Q7Z5B4 369 aa14.44□□□□□ -0.1
C9orf3-220ENST00000489318 RPAP2Q8IXW5 612 aaPredicted RBP14.44□□□□□ -0.1
C9orf3-220ENST00000489318 UBR3Q6ZT12 1888 aa14.44□□□□□ -0.1
C9orf3-220ENST00000489318 NEURL1BA8MQ27 555 aa14.43□□□□□ -0.1
C9orf3-220ENST00000489318 CRKLP46109 303 aaKnown RBP14.43□□□□□ -0.1
C9orf3-220ENST00000489318 EIF5P55010 431 aaKnown RBP14.43□□□□□ -0.1
C9orf3-220ENST00000489318 NEXNQ0ZGT2 675 aa14.43□□□□□ -0.1
C9orf3-220ENST00000489318 CEP85Q6P2H3 762 aa14.43□□□□□ -0.1
C9orf3-220ENST00000489318 POTEAQ6S8J7 498 aa14.43□□□□□ -0.1
C9orf3-220ENST00000489318 SIRT2Q8IXJ6 389 aa14.43□□□□□ -0.1
C9orf3-220ENST00000489318 SMC5Q8IY18 1101 aa14.43□□□□□ -0.1
C9orf3-220ENST00000489318 ANKRD44Q8N8A2 993 aa14.43□□□□□ -0.1
C9orf3-220ENST00000489318 C1orf115Q9H7X2 142 aa14.43□□□□□ -0.1
C9orf3-220ENST00000489318 MAP3K15Q6ZN16 1313 aa14.42□□□□□ -0.1
C9orf3-220ENST00000489318 LAMB2P55268 1798 aa14.42□□□□□ -0.1
C9orf3-220ENST00000489318 GNAI2P04899 355 aa14.42□□□□□ -0.1
C9orf3-220ENST00000489318 COL24A1Q17RW2 1714 aa14.41□□□□□ -0.1
C9orf3-220ENST00000489318 UBTFL1P0CB47 393 aaPredicted RBP14.41□□□□□ -0.1
C9orf3-220ENST00000489318 CWF19L2Q2TBE0 894 aaKnown RBP14.41□□□□□ -0.1
C9orf3-220ENST00000489318 RC3H1Q5TC82 1133 aaKnown RBP14.41□□□□□ -0.1
C9orf3-220ENST00000489318 LINC00116Q8NCU8 138 aa14.41□□□□□ -0.1
C9orf3-220ENST00000489318 ERVV-1B6SEH8 477 aa14.4□□□□□ -0.1
C9orf3-220ENST00000489318 GRM8O00222 908 aa14.4□□□□□ -0.1
C9orf3-220ENST00000489318 RGL2O15211 777 aa14.4□□□□□ -0.1
C9orf3-220ENST00000489318 NBPF7P0C2Y1 421 aaPredicted RBP14.4□□□□□ -0.1
C9orf3-220ENST00000489318 MTX1Q13505 466 aa14.4□□□□□ -0.1
C9orf3-220ENST00000489318 GCKRQ14397 625 aa14.4□□□□□ -0.1
C9orf3-220ENST00000489318 KIF6Q6ZMV9 814 aa14.4□□□□□ -0.1
C9orf3-220ENST00000489318 MYD88Q99836 296 aa14.4□□□□□ -0.1
C9orf3-220ENST00000489318 TRIM28Q13263 835 aaKnown RBP14.39□□□□□ -0.11
C9orf3-220ENST00000489318 GIGYF2Q6Y7W6 1299 aaKnown RBP14.39□□□□□ -0.11
C9orf3-220ENST00000489318 PELP1Q8IZL8 1130 aaKnown RBP14.39□□□□□ -0.11
C9orf3-220ENST00000489318 GCC1Q96CN9 775 aa14.39□□□□□ -0.11
C9orf3-220ENST00000489318 ISCA1Q9BUE6 129 aa14.39□□□□□ -0.11
C9orf3-220ENST00000489318 CCNL1Q9UK58 526 aaPredicted RBP14.39□□□□□ -0.11
C9orf3-220ENST00000489318 HDAC5Q9UQL6 1122 aa14.39□□□□□ -0.11
C9orf3-220ENST00000489318 LRRFIP2Q9Y608 721 aaKnown RBP14.39□□□□□ -0.11
C9orf3-220ENST00000489318 MYH3P11055 1940 aa14.39□□□□□ -0.11
C9orf3-220ENST00000489318 HSP90AB3PQ58FF7 597 aa14.38□□□□□ -0.11
C9orf3-220ENST00000489318 CCDC191Q8NCU4 936 aa14.38□□□□□ -0.11
C9orf3-220ENST00000489318 ZBTB3Q9H5J0 574 aa14.38□□□□□ -0.11
C9orf3-220ENST00000489318 TUBGCP6Q96RT7 1819 aa14.38□□□□□ -0.11
C9orf3-220ENST00000489318 HMMRO75330 724 aa14.37□□□□□ -0.11
C9orf3-220ENST00000489318 CASP7P55210 303 aa14.37□□□□□ -0.11
C9orf3-220ENST00000489318 TCIRG1Q13488 830 aa14.37□□□□□ -0.11
C9orf3-220ENST00000489318 SLC27A3Q5K4L6 730 aa14.37□□□□□ -0.11
C9orf3-220ENST00000489318 DZIP3Q86Y13 1208 aaKnown RBP14.37□□□□□ -0.11
C9orf3-220ENST00000489318 C9orf78Q9NZ63 289 aaPredicted RBP14.37□□□□□ -0.11
C9orf3-220ENST00000489318 CASZ1Q86V15 1759 aa14.37□□□□□ -0.11
C9orf3-220ENST00000489318 QSER1Q2KHR3 1735 aa14.36□□□□□ -0.11
C9orf3-220ENST00000489318 DDX60Q8IY21 1712 aaKnown RBP14.36□□□□□ -0.11
C9orf3-220ENST00000489318 TRIM37O94972 964 aa14.36□□□□□ -0.11
C9orf3-220ENST00000489318 ATP8B2P98198 1209 aa14.36□□□□□ -0.11
C9orf3-220ENST00000489318 POLA2Q14181 598 aa14.36□□□□□ -0.11
C9orf3-220ENST00000489318 SSH3Q8TE77 659 aa14.36□□□□□ -0.11
C9orf3-220ENST00000489318 KAZALD1Q96I82 304 aa14.36□□□□□ -0.11
C9orf3-220ENST00000489318 DCTPP1Q9H773 170 aa14.36□□□□□ -0.11
C9orf3-220ENST00000489318 A0A087WZG4 1122 aa14.35□□□□□ -0.11
C9orf3-220ENST00000489318 H7C1W4 665 aa14.35□□□□□ -0.11
C9orf3-220ENST00000489318 PLSCR1O15162 318 aa14.35□□□□□ -0.11
C9orf3-220ENST00000489318 RPS6KA4O75676 772 aa14.35□□□□□ -0.11
C9orf3-220ENST00000489318 CAMTA2O94983 1202 aa14.35□□□□□ -0.11
C9orf3-220ENST00000489318 HMGB2P26583 209 aaKnown RBP14.35□□□□□ -0.11
C9orf3-220ENST00000489318 CWC25Q9NXE8 425 aaPredicted RBP14.35□□□□□ -0.11
C9orf3-220ENST00000489318 ZNF330Q9Y3S2 320 aaPredicted RBP14.35□□□□□ -0.11
C9orf3-220ENST00000489318 PNMA6EA0A0J9YXQ4 647 aa14.34□□□□□ -0.11
C9orf3-220ENST00000489318 ATP5J2-PTCD1G3V325 749 aa14.34□□□□□ -0.11
C9orf3-220ENST00000489318 HLFQ16534 295 aa14.34□□□□□ -0.11
C9orf3-220ENST00000489318 RABL6Q3YEC7 729 aaPredicted RBP14.34□□□□□ -0.11
C9orf3-220ENST00000489318 SUCLG2Q96I99 432 aa14.34□□□□□ -0.11
C9orf3-220ENST00000489318 LRRC4BQ9NT99 713 aa14.34□□□□□ -0.11
C9orf3-220ENST00000489318 PDZRN3Q9UPQ7 1066 aa14.34□□□□□ -0.11
C9orf3-220ENST00000489318 EP400Q96L91 3159 aa14.34□□□□□ -0.11
C9orf3-220ENST00000489318 KCNQ4P56696 695 aa14.33□□□□□ -0.12
C9orf3-220ENST00000489318 NUCB1Q02818 461 aa14.33□□□□□ -0.12
C9orf3-220ENST00000489318 NPM2Q86SE8 214 aaKnown RBP14.33□□□□□ -0.12
C9orf3-220ENST00000489318 ZNF34Q8IZ26 560 aa14.33□□□□□ -0.12
C9orf3-220ENST00000489318 CDHR2Q9BYE9 1310 aa14.33□□□□□ -0.12
C9orf3-220ENST00000489318 LRP5O75197 1615 aa14.33□□□□□ -0.12
C9orf3-220ENST00000489318 CLEC4GQ6UXB4 293 aa14.32□□□□□ -0.12
C9orf3-220ENST00000489318 UBE3BQ7Z3V4 1068 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms