RNA–Protein interactions for RNA: ENST00000488594.5

GGPS1-206, Transcript of geranylgeranyl diphosphate synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GGPS1, Length 1,396 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGPS1-206ENST00000488594 KCNQ3O43525 872 aa25.5■■□□□ 1.67
GGPS1-206ENST00000488594 PRPF40BQ6NWY9 871 aaKnown RBP25.5■■□□□ 1.67
GGPS1-206ENST00000488594 CLEC4GQ6UXB4 293 aa25.5■■□□□ 1.67
GGPS1-206ENST00000488594 COL11A2P13942 1736 aaPredicted RBP25.5■■□□□ 1.67
GGPS1-206ENST00000488594 RTF1Q92541 710 aaKnown RBP25.49■■□□□ 1.67
GGPS1-206ENST00000488594 ZNF652Q9Y2D9 606 aa25.49■■□□□ 1.67
GGPS1-206ENST00000488594 USP16Q9Y5T5 823 aa25.49■■□□□ 1.67
GGPS1-206ENST00000488594 SNRPA1P09661 255 aaKnown RBP25.48■■□□□ 1.67
GGPS1-206ENST00000488594 FER1L6Q2WGJ9 1857 aa25.48■■□□□ 1.67
GGPS1-206ENST00000488594 CCDC88AQ3V6T2 1871 aa25.48■■□□□ 1.67
GGPS1-206ENST00000488594 RGL2O15211 777 aa25.47■■□□□ 1.67
GGPS1-206ENST00000488594 NBPF5PQ86XG9 351 aaPredicted RBP25.46■■□□□ 1.67
GGPS1-206ENST00000488594 U2AF1L5P0DN76 240 aaPredicted RBP25.44■■□□□ 1.66
GGPS1-206ENST00000488594 U2AF1Q01081 240 aaKnown RBP eCLIP25.44■■□□□ 1.66
GGPS1-206ENST00000488594 CHADLQ6NUI6 762 aa25.44■■□□□ 1.66
GGPS1-206ENST00000488594 BCORQ6W2J9 1755 aa25.44■■□□□ 1.66
GGPS1-206ENST00000488594 DICER1Q9UPY3 1922 aaKnown RBP25.44■■□□□ 1.66
GGPS1-206ENST00000488594 HTATSF1O43719 755 aaKnown RBP25.43■■□□□ 1.66
GGPS1-206ENST00000488594 DDNO94850 711 aaPredicted RBP25.43■■□□□ 1.66
GGPS1-206ENST00000488594 NPR1P16066 1061 aa25.43■■□□□ 1.66
GGPS1-206ENST00000488594 CCDC93Q567U6 631 aa25.43■■□□□ 1.66
GGPS1-206ENST00000488594 TPTE2Q6XPS3 522 aa25.43■■□□□ 1.66
GGPS1-206ENST00000488594 TNS4Q8IZW8 715 aa25.43■■□□□ 1.66
GGPS1-206ENST00000488594 PRAMEF22A3QJZ6 481 aa25.42■■□□□ 1.66
GGPS1-206ENST00000488594 IQCA1LA6NCM1 817 aa25.42■■□□□ 1.66
GGPS1-206ENST00000488594 HSPA1AP0DMV8 641 aaKnown RBP25.42■■□□□ 1.66
GGPS1-206ENST00000488594 HSPA1BP0DMV9 641 aaKnown RBP25.42■■□□□ 1.66
GGPS1-206ENST00000488594 PIP4K2AP48426 406 aaPredicted RBP25.42■■□□□ 1.66
GGPS1-206ENST00000488594 MCM10Q7L590 875 aa25.42■■□□□ 1.66
GGPS1-206ENST00000488594 C7orf43Q8WVR3 580 aa25.42■■□□□ 1.66
GGPS1-206ENST00000488594 CREBZFQ9NS37 354 aa25.42■■□□□ 1.66
GGPS1-206ENST00000488594 SLX4Q8IY92 1834 aa25.41■■□□□ 1.66
GGPS1-206ENST00000488594 KLRG2A4D1S0 409 aaPredicted RBP25.41■■□□□ 1.66
GGPS1-206ENST00000488594 NIP7Q9Y221 180 aaKnown RBP eCLIP25.4■■□□□ 1.66
GGPS1-206ENST00000488594 ARFGEF2Q9Y6D5 1785 aa25.4■■□□□ 1.66
GGPS1-206ENST00000488594 L3MBTL3Q96JM7 780 aaPredicted RBP25.39■■□□□ 1.65
GGPS1-206ENST00000488594 PCNTO95613 3336 aa25.38■■□□□ 1.65
GGPS1-206ENST00000488594 PPP2R1AP30153 589 aa25.38■■□□□ 1.65
GGPS1-206ENST00000488594 NBPF26B4DH59 902 aa25.37■■□□□ 1.65
GGPS1-206ENST00000488594 FKBP4Q02790 459 aaKnown RBP eCLIP25.37■■□□□ 1.65
GGPS1-206ENST00000488594 NBPF10Q6P3W6 841 aaKnown RBP25.37■■□□□ 1.65
GGPS1-206ENST00000488594 NBPF15Q8N660 670 aa25.37■■□□□ 1.65
GGPS1-206ENST00000488594 TAF7Q15545 349 aaPredicted RBP25.36■■□□□ 1.65
GGPS1-206ENST00000488594 LDHDQ86WU2 507 aa25.36■■□□□ 1.65
GGPS1-206ENST00000488594 RTKN2Q8IZC4 609 aa25.36■■□□□ 1.65
GGPS1-206ENST00000488594 POTEIP0CG38 1075 aa25.34■■□□□ 1.65
GGPS1-206ENST00000488594 POTEJP0CG39 1038 aa25.34■■□□□ 1.65
GGPS1-206ENST00000488594 DCTN1Q14203 1278 aa25.34■■□□□ 1.65
GGPS1-206ENST00000488594 TAF1DQ9H5J8 278 aaPredicted RBP25.34■■□□□ 1.65
GGPS1-206ENST00000488594 ALDH1B1P30837 517 aa25.33■■□□□ 1.65
GGPS1-206ENST00000488594 GTF2E1P29083 439 aaPredicted RBP25.32■■□□□ 1.64
GGPS1-206ENST00000488594 CACNA1SQ13698 1873 aa25.32■■□□□ 1.64
GGPS1-206ENST00000488594 CAPN15O75808 1086 aa25.31■■□□□ 1.64
GGPS1-206ENST00000488594 NEFMP07197 916 aa25.31■■□□□ 1.64
GGPS1-206ENST00000488594 ZNF277Q9NRM2 450 aaPredicted RBP25.31■■□□□ 1.64
GGPS1-206ENST00000488594 MKRN1Q9UHC7 482 aaKnown RBP25.31■■□□□ 1.64
GGPS1-206ENST00000488594 HLFQ16534 295 aa25.31■■□□□ 1.64
GGPS1-206ENST00000488594 PNISRQ8TF01 805 aaKnown RBP25.31■■□□□ 1.64
GGPS1-206ENST00000488594 PASKQ96RG2 1323 aa25.31■■□□□ 1.64
GGPS1-206ENST00000488594 SCN4AP35499 1836 aa25.3■■□□□ 1.64
GGPS1-206ENST00000488594 FAM177BA6PVY3 158 aa25.3■■□□□ 1.64
GGPS1-206ENST00000488594 NYXQ9GZU5 481 aa25.3■■□□□ 1.64
GGPS1-206ENST00000488594 HACL1Q9UJ83 578 aa25.3■■□□□ 1.64
GGPS1-206ENST00000488594 CNTNAP1P78357 1384 aa25.29■■□□□ 1.64
GGPS1-206ENST00000488594 ZNF541Q9H0D2 1346 aa25.29■■□□□ 1.64
GGPS1-206ENST00000488594 ERVV-1B6SEH8 477 aa25.29■■□□□ 1.64
GGPS1-206ENST00000488594 IARSP41252 1262 aaKnown RBP25.28■■□□□ 1.64
GGPS1-206ENST00000488594 CRY2Q49AN0 593 aa25.28■■□□□ 1.64
GGPS1-206ENST00000488594 FZD9O00144 591 aa25.27■■□□□ 1.64
GGPS1-206ENST00000488594 CC2D2BQ6DHV5 1058 aa25.27■■□□□ 1.64
GGPS1-206ENST00000488594 OLFM4Q6UX06 510 aa25.27■■□□□ 1.64
GGPS1-206ENST00000488594 PNMA8AQ86V59 439 aaPredicted RBP25.27■■□□□ 1.64
GGPS1-206ENST00000488594 MIS18AQ9NYP9 233 aa25.27■■□□□ 1.64
GGPS1-206ENST00000488594 EPHX2P34913 555 aa25.26■■□□□ 1.63
GGPS1-206ENST00000488594 EAPPQ56P03 285 aaPredicted RBP25.26■■□□□ 1.63
GGPS1-206ENST00000488594 SYNE4Q8N205 404 aa25.26■■□□□ 1.63
GGPS1-206ENST00000488594 PSMD1Q99460 953 aa25.26■■□□□ 1.63
GGPS1-206ENST00000488594 TMEM88BA6NKF7 163 aa25.25■■□□□ 1.63
GGPS1-206ENST00000488594 GPC2Q8N158 579 aa25.25■■□□□ 1.63
GGPS1-206ENST00000488594 MAP3K15Q6ZN16 1313 aa25.24■■□□□ 1.63
GGPS1-206ENST00000488594 ITGBL1O95965 494 aaPredicted RBP25.24■■□□□ 1.63
GGPS1-206ENST00000488594 GRIPAP1Q4V328 841 aa25.24■■□□□ 1.63
GGPS1-206ENST00000488594 KIF6Q6ZMV9 814 aa25.24■■□□□ 1.63
GGPS1-206ENST00000488594 JDP2Q8WYK2 163 aa25.24■■□□□ 1.63
GGPS1-206ENST00000488594 LAMB4A4D0S4 1761 aa25.24■■□□□ 1.63
GGPS1-206ENST00000488594 NGEFQ8N5V2 710 aa25.23■■□□□ 1.63
GGPS1-206ENST00000488594 CLEC11AQ9Y240 323 aa25.23■■□□□ 1.63
GGPS1-206ENST00000488594 IBTKQ9P2D0 1353 aaPredicted RBP25.23■■□□□ 1.63
GGPS1-206ENST00000488594 RIC1Q4ADV7 1423 aa25.22■■□□□ 1.63
GGPS1-206ENST00000488594 ABCC12Q96J65 1359 aa25.22■■□□□ 1.63
GGPS1-206ENST00000488594 RNF123Q5XPI4 1314 aa25.22■■□□□ 1.63
GGPS1-206ENST00000488594 SNED1Q8TER0 1413 aa25.21■■□□□ 1.63
GGPS1-206ENST00000488594 EIF4A1P60842 406 aaKnown RBP25.21■■□□□ 1.63
GGPS1-206ENST00000488594 NUTM1Q86Y26 1132 aa25.21■■□□□ 1.63
GGPS1-206ENST00000488594 RPGRQ92834 1020 aaKnown RBP25.21■■□□□ 1.63
GGPS1-206ENST00000488594 HOXA10P31260 410 aaPredicted RBP25.2■■□□□ 1.63
GGPS1-206ENST00000488594 RRP7AQ9Y3A4 280 aaKnown RBP25.2■■□□□ 1.63
GGPS1-206ENST00000488594 AIDAQ96BJ3 306 aa25.19■■□□□ 1.62
GGPS1-206ENST00000488594 PNNQ9H307 717 aaKnown RBP25.19■■□□□ 1.62
GGPS1-206ENST00000488594 VEGFBP49765 207 aa25.18■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms