RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 STYK1Q6J9G0 422 aa12.68□□□□□ -0.38
COL17A1-207ENST00000488320 PRPF40BQ6NWY9 871 aaKnown RBP12.68□□□□□ -0.38
COL17A1-207ENST00000488320 VSIG10Q8N0Z9 540 aa12.68□□□□□ -0.38
COL17A1-207ENST00000488320 MASTLQ96GX5 879 aa12.68□□□□□ -0.38
COL17A1-207ENST00000488320 SETDB2Q96T68 719 aa12.68□□□□□ -0.38
COL17A1-207ENST00000488320 ANKRD31Q8N7Z5 1873 aa12.68□□□□□ -0.38
COL17A1-207ENST00000488320 SLX4Q8IY92 1834 aa12.67□□□□□ -0.38
COL17A1-207ENST00000488320 RNMTO43148 476 aaKnown RBP12.67□□□□□ -0.38
COL17A1-207ENST00000488320 CNBD1Q8NA66 436 aa12.67□□□□□ -0.38
COL17A1-207ENST00000488320 TBC1D2BQ9UPU7 963 aa12.67□□□□□ -0.38
COL17A1-207ENST00000488320 ECE1P42892 770 aa12.66□□□□□ -0.38
COL17A1-207ENST00000488320 EIF5P55010 431 aaKnown RBP12.66□□□□□ -0.38
COL17A1-207ENST00000488320 CCDC93Q567U6 631 aa12.66□□□□□ -0.38
COL17A1-207ENST00000488320 TTC5Q8N0Z6 440 aa12.66□□□□□ -0.38
COL17A1-207ENST00000488320 SRGNP10124 158 aa12.65□□□□□ -0.38
COL17A1-207ENST00000488320 MORC1Q86VD1 984 aa12.65□□□□□ -0.38
COL17A1-207ENST00000488320 CAPNS2Q96L46 248 aa12.65□□□□□ -0.38
COL17A1-207ENST00000488320 GPR101Q96P66 508 aaPredicted RBP12.65□□□□□ -0.38
COL17A1-207ENST00000488320 ZNF277Q9NRM2 450 aaPredicted RBP12.65□□□□□ -0.38
COL17A1-207ENST00000488320 RNF123Q5XPI4 1314 aa12.64□□□□□ -0.39
COL17A1-207ENST00000488320 ZNF541Q9H0D2 1346 aa12.64□□□□□ -0.39
COL17A1-207ENST00000488320 FKBP4Q02790 459 aaKnown RBP eCLIP12.64□□□□□ -0.39
COL17A1-207ENST00000488320 DDX21Q9NR30 783 aaKnown RBP eCLIP12.64□□□□□ -0.39
COL17A1-207ENST00000488320 TSKSQ9UJT2 592 aa12.64□□□□□ -0.39
COL17A1-207ENST00000488320 COL11A2P13942 1736 aaPredicted RBP12.64□□□□□ -0.39
COL17A1-207ENST00000488320 CYP4F22Q6NT55 531 aa12.63□□□□□ -0.39
COL17A1-207ENST00000488320 TEX13AQ9BXU3 409 aaPredicted RBP12.63□□□□□ -0.39
COL17A1-207ENST00000488320 LMOD1P29536 600 aaPredicted RBP12.62□□□□□ -0.39
COL17A1-207ENST00000488320 RTKN2Q8IZC4 609 aa12.62□□□□□ -0.39
COL17A1-207ENST00000488320 SYNE4Q8N205 404 aa12.62□□□□□ -0.39
COL17A1-207ENST00000488320 GJA3Q9Y6H8 435 aa12.62□□□□□ -0.39
COL17A1-207ENST00000488320 HMOX1P09601 288 aa12.61□□□□□ -0.39
COL17A1-207ENST00000488320 NPR1P16066 1061 aa12.61□□□□□ -0.39
COL17A1-207ENST00000488320 IL13P35225 146 aa12.61□□□□□ -0.39
COL17A1-207ENST00000488320 IL6STP40189 918 aaPredicted RBP12.61□□□□□ -0.39
COL17A1-207ENST00000488320 NBPF5PQ86XG9 351 aaPredicted RBP12.61□□□□□ -0.39
COL17A1-207ENST00000488320 GPC2Q8N158 579 aa12.61□□□□□ -0.39
COL17A1-207ENST00000488320 C7orf43Q8WVR3 580 aa12.61□□□□□ -0.39
COL17A1-207ENST00000488320 JDP2Q8WYK2 163 aa12.61□□□□□ -0.39
COL17A1-207ENST00000488320 MCOLN1Q9GZU1 580 aa12.61□□□□□ -0.39
COL17A1-207ENST00000488320 FZD9O00144 591 aa12.6□□□□□ -0.39
COL17A1-207ENST00000488320 IARSP41252 1262 aaKnown RBP12.6□□□□□ -0.39
COL17A1-207ENST00000488320 EIF6P56537 245 aaKnown RBP12.6□□□□□ -0.39
COL17A1-207ENST00000488320 FMR1Q06787 632 aaKnown RBP eCLIP12.6□□□□□ -0.39
COL17A1-207ENST00000488320 PANK3Q9H999 370 aa12.6□□□□□ -0.39
COL17A1-207ENST00000488320 ARFGEF2Q9Y6D5 1785 aa12.59□□□□□ -0.39
COL17A1-207ENST00000488320 AOC2O75106 756 aa12.59□□□□□ -0.39
COL17A1-207ENST00000488320 CAMTA2O94983 1202 aa12.59□□□□□ -0.39
COL17A1-207ENST00000488320 A1BGP04217 495 aa12.59□□□□□ -0.39
COL17A1-207ENST00000488320 MAP2K2P36507 400 aa12.59□□□□□ -0.39
COL17A1-207ENST00000488320 TEFQ10587 303 aa12.59□□□□□ -0.39
COL17A1-207ENST00000488320 DGKZQ13574 1117 aa12.59□□□□□ -0.39
COL17A1-207ENST00000488320 MTHFSDQ2M296 383 aaKnown RBP12.59□□□□□ -0.39
COL17A1-207ENST00000488320 OLFM4Q6UX06 510 aa12.59□□□□□ -0.39
COL17A1-207ENST00000488320 DZIP3Q86Y13 1208 aaKnown RBP12.59□□□□□ -0.39
COL17A1-207ENST00000488320 CASP8AP2Q9UKL3 1982 aa12.59□□□□□ -0.39
COL17A1-207ENST00000488320 ADAMTSL1Q8N6G6 1762 aa12.58□□□□□ -0.39
COL17A1-207ENST00000488320 ALDH1B1P30837 517 aa12.58□□□□□ -0.4
COL17A1-207ENST00000488320 ZNF496Q96IT1 587 aaPredicted RBP12.58□□□□□ -0.4
COL17A1-207ENST00000488320 HEG1Q9ULI3 1381 aa12.57□□□□□ -0.4
COL17A1-207ENST00000488320 FAM177BA6PVY3 158 aa12.57□□□□□ -0.4
COL17A1-207ENST00000488320 CA12O43570 354 aa12.57□□□□□ -0.4
COL17A1-207ENST00000488320 GTF2E1P29083 439 aaPredicted RBP12.57□□□□□ -0.4
COL17A1-207ENST00000488320 ZNF790Q6PG37 636 aa12.57□□□□□ -0.4
COL17A1-207ENST00000488320 TPTE2Q6XPS3 522 aa12.57□□□□□ -0.4
COL17A1-207ENST00000488320 ZNF652Q9Y2D9 606 aa12.57□□□□□ -0.4
COL17A1-207ENST00000488320 TLL2Q9Y6L7 1015 aa12.57□□□□□ -0.4
COL17A1-207ENST00000488320 MRC1P22897 1456 aa12.57□□□□□ -0.4
COL17A1-207ENST00000488320 SCN7AQ01118 1682 aa12.57□□□□□ -0.4
COL17A1-207ENST00000488320 TRPM7Q96QT4 1865 aa12.57□□□□□ -0.4
COL17A1-207ENST00000488320 TRAF5O00463 557 aa12.56□□□□□ -0.4
COL17A1-207ENST00000488320 EPS15P42566 896 aa12.56□□□□□ -0.4
COL17A1-207ENST00000488320 CST9Q5W186 159 aa12.56□□□□□ -0.4
COL17A1-207ENST00000488320 USP50Q70EL3 339 aaPredicted RBP12.56□□□□□ -0.4
COL17A1-207ENST00000488320 FMNL2Q96PY5 1086 aa12.56□□□□□ -0.4
COL17A1-207ENST00000488320 UBR2Q8IWV8 1755 aa12.56□□□□□ -0.4
COL17A1-207ENST00000488320 CLEC4GQ6UXB4 293 aa12.55□□□□□ -0.4
COL17A1-207ENST00000488320 CELF2O95319 508 aaKnown RBP12.54□□□□□ -0.4
COL17A1-207ENST00000488320 PIP4K2AP48426 406 aaPredicted RBP12.54□□□□□ -0.4
COL17A1-207ENST00000488320 LARGE2Q8N3Y3 721 aa12.54□□□□□ -0.4
COL17A1-207ENST00000488320 NIP7Q9Y221 180 aaKnown RBP eCLIP12.54□□□□□ -0.4
COL17A1-207ENST00000488320 KNSTRNQ9Y448 316 aa12.54□□□□□ -0.4
COL17A1-207ENST00000488320 THSD7BQ9C0I4 1608 aa12.53□□□□□ -0.4
COL17A1-207ENST00000488320 KLRG2A4D1S0 409 aaPredicted RBP12.53□□□□□ -0.4
COL17A1-207ENST00000488320 PSMD1Q99460 953 aa12.53□□□□□ -0.4
COL17A1-207ENST00000488320 GNAT3A8MTJ3 354 aa12.52□□□□□ -0.41
COL17A1-207ENST00000488320 SCNN1DP51172 638 aa12.52□□□□□ -0.41
COL17A1-207ENST00000488320 BRPF1P55201 1214 aaPredicted RBP12.52□□□□□ -0.41
COL17A1-207ENST00000488320 CIAPIN1Q6FI81 312 aa12.52□□□□□ -0.41
COL17A1-207ENST00000488320 SAPCD2Q86UD0 394 aa12.52□□□□□ -0.41
COL17A1-207ENST00000488320 IL17REQ8NFR9 667 aa12.52□□□□□ -0.41
COL17A1-207ENST00000488320 ZNF408Q9H9D4 720 aa12.52□□□□□ -0.41
COL17A1-207ENST00000488320 USP16Q9Y5T5 823 aa12.52□□□□□ -0.41
COL17A1-207ENST00000488320 BTBD11A6QL63 1104 aa12.51□□□□□ -0.41
COL17A1-207ENST00000488320 TCERG1O14776 1098 aaKnown RBP12.51□□□□□ -0.41
COL17A1-207ENST00000488320 DIAPH1O60610 1272 aaKnown RBP12.51□□□□□ -0.41
COL17A1-207ENST00000488320 SOX10P56693 466 aa12.51□□□□□ -0.41
COL17A1-207ENST00000488320 CC2D2BQ6DHV5 1058 aa12.51□□□□□ -0.41
COL17A1-207ENST00000488320 ADARB2Q9NS39 739 aaKnown RBP12.51□□□□□ -0.41
COL17A1-207ENST00000488320 TNRC18O15417 2968 aaPredicted RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms