RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 C7orf43Q8WVR3 580 aa20.78■□□□□ 0.92
MCF2L-228ENST00000487354 TEX13AQ9BXU3 409 aaPredicted RBP20.78■□□□□ 0.92
MCF2L-228ENST00000487354 MKRN1Q9UHC7 482 aaKnown RBP20.78■□□□□ 0.92
MCF2L-228ENST00000487354 ZNF330Q9Y3S2 320 aaPredicted RBP20.78■□□□□ 0.92
MCF2L-228ENST00000487354 CNTNAP1P78357 1384 aa20.77■□□□□ 0.92
MCF2L-228ENST00000487354 TEFQ10587 303 aa20.77■□□□□ 0.92
MCF2L-228ENST00000487354 CNKSR1Q969H4 720 aa20.76■□□□□ 0.91
MCF2L-228ENST00000487354 L3MBTL3Q96JM7 780 aaPredicted RBP20.76■□□□□ 0.91
MCF2L-228ENST00000487354 FMNL2Q96PY5 1086 aa20.76■□□□□ 0.91
MCF2L-228ENST00000487354 SNED1Q8TER0 1413 aa20.76■□□□□ 0.91
MCF2L-228ENST00000487354 NPC1L1Q9UHC9 1359 aa20.75■□□□□ 0.91
MCF2L-228ENST00000487354 LAMB4A4D0S4 1761 aa20.75■□□□□ 0.91
MCF2L-228ENST00000487354 PRAMEF22A3QJZ6 481 aa20.75■□□□□ 0.91
MCF2L-228ENST00000487354 PIP4K2AP48426 406 aaPredicted RBP20.75■□□□□ 0.91
MCF2L-228ENST00000487354 GAS2L2Q8NHY3 880 aa20.75■□□□□ 0.91
MCF2L-228ENST00000487354 MASTLQ96GX5 879 aa20.75■□□□□ 0.91
MCF2L-228ENST00000487354 SETDB2Q96T68 719 aa20.75■□□□□ 0.91
MCF2L-228ENST00000487354 FOXN1O15353 648 aa20.74■□□□□ 0.91
MCF2L-228ENST00000487354 PHACTR3Q96KR7 559 aa20.74■□□□□ 0.91
MCF2L-228ENST00000487354 ZNF541Q9H0D2 1346 aa20.74■□□□□ 0.91
MCF2L-228ENST00000487354 ST5P78524 1137 aa20.73■□□□□ 0.91
MCF2L-228ENST00000487354 DZIP3Q86Y13 1208 aaKnown RBP20.73■□□□□ 0.91
MCF2L-228ENST00000487354 TAF1DQ9H5J8 278 aaPredicted RBP20.73■□□□□ 0.91
MCF2L-228ENST00000487354 USP16Q9Y5T5 823 aa20.73■□□□□ 0.91
MCF2L-228ENST00000487354 LTBP1Q14766 1721 aa20.73■□□□□ 0.91
MCF2L-228ENST00000487354 KLRG2A4D1S0 409 aaPredicted RBP20.72■□□□□ 0.91
MCF2L-228ENST00000487354 U2SURPO15042 1029 aaKnown RBP20.72■□□□□ 0.91
MCF2L-228ENST00000487354 ITGBL1O95965 494 aaPredicted RBP20.72■□□□□ 0.91
MCF2L-228ENST00000487354 OLFM4Q6UX06 510 aa20.72■□□□□ 0.91
MCF2L-228ENST00000487354 LDHDQ86WU2 507 aa20.72■□□□□ 0.91
MCF2L-228ENST00000487354 COL4A5P29400 1685 aa20.72■□□□□ 0.91
MCF2L-228ENST00000487354 SOGA3Q5TF21 947 aa20.71■□□□□ 0.91
MCF2L-228ENST00000487354 THSD7BQ9C0I4 1608 aa20.71■□□□□ 0.91
MCF2L-228ENST00000487354 NUP98P52948 1817 aa20.7■□□□□ 0.9
MCF2L-228ENST00000487354 RSPH6AQ9H0K4 717 aa20.7■□□□□ 0.9
MCF2L-228ENST00000487354 IQCA1LA6NCM1 817 aa20.69■□□□□ 0.9
MCF2L-228ENST00000487354 BTBD11A6QL63 1104 aa20.69■□□□□ 0.9
MCF2L-228ENST00000487354 CCDC93Q567U6 631 aa20.69■□□□□ 0.9
MCF2L-228ENST00000487354 KDM3BQ7LBC6 1761 aa20.68■□□□□ 0.9
MCF2L-228ENST00000487354 NBPF26B4DH59 902 aa20.68■□□□□ 0.9
MCF2L-228ENST00000487354 VEGFBP49765 207 aa20.68■□□□□ 0.9
MCF2L-228ENST00000487354 FKBP4Q02790 459 aaKnown RBP eCLIP20.68■□□□□ 0.9
MCF2L-228ENST00000487354 NBPF10Q6P3W6 841 aaKnown RBP20.68■□□□□ 0.9
MCF2L-228ENST00000487354 CLEC4GQ6UXB4 293 aa20.68■□□□□ 0.9
MCF2L-228ENST00000487354 NBPF5PQ86XG9 351 aaPredicted RBP20.68■□□□□ 0.9
MCF2L-228ENST00000487354 NBPF15Q8N660 670 aa20.68■□□□□ 0.9
MCF2L-228ENST00000487354 ZNF277Q9NRM2 450 aaPredicted RBP20.68■□□□□ 0.9
MCF2L-228ENST00000487354 DLG5Q8TDM6 1919 aa20.67■□□□□ 0.9
MCF2L-228ENST00000487354 NPR1P16066 1061 aa20.67■□□□□ 0.9
MCF2L-228ENST00000487354 PRKAR2BP31323 418 aa20.67■□□□□ 0.9
MCF2L-228ENST00000487354 NPHP1O15259 732 aa20.66■□□□□ 0.9
MCF2L-228ENST00000487354 PRDM10Q9NQV6 1147 aa20.66■□□□□ 0.9
MCF2L-228ENST00000487354 TMEM88BA6NKF7 163 aa20.65■□□□□ 0.9
MCF2L-228ENST00000487354 ABCC12Q96J65 1359 aa20.64■□□□□ 0.89
MCF2L-228ENST00000487354 RNF123Q5XPI4 1314 aa20.63■□□□□ 0.89
MCF2L-228ENST00000487354 FZD9O00144 591 aa20.63■□□□□ 0.89
MCF2L-228ENST00000487354 RGL2O15211 777 aa20.63■□□□□ 0.89
MCF2L-228ENST00000487354 MCM10Q7L590 875 aa20.63■□□□□ 0.89
MCF2L-228ENST00000487354 WBP1LQ9NX94 342 aa20.63■□□□□ 0.89
MCF2L-228ENST00000487354 HACL1Q9UJ83 578 aa20.63■□□□□ 0.89
MCF2L-228ENST00000487354 TRPM7Q96QT4 1865 aa20.62■□□□□ 0.89
MCF2L-228ENST00000487354 SNRPA1P09661 255 aaKnown RBP20.62■□□□□ 0.89
MCF2L-228ENST00000487354 EPHX2P34913 555 aa20.62■□□□□ 0.89
MCF2L-228ENST00000487354 CNGB1Q14028 1251 aaPredicted RBP20.62■□□□□ 0.89
MCF2L-228ENST00000487354 HLFQ16534 295 aa20.62■□□□□ 0.89
MCF2L-228ENST00000487354 EAPPQ56P03 285 aaPredicted RBP20.62■□□□□ 0.89
MCF2L-228ENST00000487354 NPM2Q86SE8 214 aaKnown RBP20.62■□□□□ 0.89
MCF2L-228ENST00000487354 SLC51AQ86UW1 340 aa20.62■□□□□ 0.89
MCF2L-228ENST00000487354 NIP7Q9Y221 180 aaKnown RBP eCLIP20.62■□□□□ 0.89
MCF2L-228ENST00000487354 ZNF652Q9Y2D9 606 aa20.62■□□□□ 0.89
MCF2L-228ENST00000487354 RASSF10A6NK89 507 aa20.61■□□□□ 0.89
MCF2L-228ENST00000487354 IARSP41252 1262 aaKnown RBP20.61■□□□□ 0.89
MCF2L-228ENST00000487354 CTCFP49711 727 aaPredicted RBP20.61■□□□□ 0.89
MCF2L-228ENST00000487354 CRY2Q49AN0 593 aa20.6■□□□□ 0.89
MCF2L-228ENST00000487354 MAP1SQ66K74 1059 aaPredicted RBP20.6■□□□□ 0.89
MCF2L-228ENST00000487354 RTKN2Q8IZC4 609 aa20.6■□□□□ 0.89
MCF2L-228ENST00000487354 DCTN1Q14203 1278 aa20.59■□□□□ 0.89
MCF2L-228ENST00000487354 TPTE2Q6XPS3 522 aa20.59■□□□□ 0.89
MCF2L-228ENST00000487354 SYNE4Q8N205 404 aa20.59■□□□□ 0.89
MCF2L-228ENST00000487354 RIC1Q4ADV7 1423 aa20.59■□□□□ 0.89
MCF2L-228ENST00000487354 FAM177BA6PVY3 158 aa20.58■□□□□ 0.89
MCF2L-228ENST00000487354 HSPA8P11142 646 aaKnown RBP20.58■□□□□ 0.89
MCF2L-228ENST00000487354 LBX1P52954 281 aa20.58■□□□□ 0.89
MCF2L-228ENST00000487354 CCER1Q8TC90 406 aaPredicted RBP20.58■□□□□ 0.89
MCF2L-228ENST00000487354 CNTROBQ8N137 903 aa20.57■□□□□ 0.88
MCF2L-228ENST00000487354 GPC2Q8N158 579 aa20.57■□□□□ 0.88
MCF2L-228ENST00000487354 PSMD1Q99460 953 aa20.57■□□□□ 0.88
MCF2L-228ENST00000487354 AIDAQ96BJ3 306 aa20.56■□□□□ 0.88
MCF2L-228ENST00000487354 LAMB2P55268 1798 aa20.56■□□□□ 0.88
MCF2L-228ENST00000487354 ALDH1B1P30837 517 aa20.55■□□□□ 0.88
MCF2L-228ENST00000487354 FMR1Q06787 632 aaKnown RBP eCLIP20.55■□□□□ 0.88
MCF2L-228ENST00000487354 PNMA8AQ86V59 439 aaPredicted RBP20.55■□□□□ 0.88
MCF2L-228ENST00000487354 NUTM1Q86Y26 1132 aa20.55■□□□□ 0.88
MCF2L-228ENST00000487354 CLEC11AQ9Y240 323 aa20.55■□□□□ 0.88
MCF2L-228ENST00000487354 WDR33Q9C0J8 1336 aaKnown RBP20.54■□□□□ 0.88
MCF2L-228ENST00000487354 DEFB115Q30KQ5 88 aa20.54■□□□□ 0.88
MCF2L-228ENST00000487354 IBTKQ9P2D0 1353 aaPredicted RBP20.54■□□□□ 0.88
MCF2L-228ENST00000487354 UBN2Q6ZU65 1347 aa20.53■□□□□ 0.88
MCF2L-228ENST00000487354 SCNN1DP51172 638 aa20.53■□□□□ 0.88
MCF2L-228ENST00000487354 MIS18AQ9NYP9 233 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms