RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 KRT24Q2M2I5 525 aa23.06■■□□□ 1.28
COL6A1-204ENST00000486023 CLEC4GQ6UXB4 293 aa23.06■■□□□ 1.28
COL6A1-204ENST00000486023 ZNF219Q9P2Y4 722 aaPredicted RBP23.06■■□□□ 1.28
COL6A1-204ENST00000486023 PDE6BP35913 854 aa23.05■■□□□ 1.28
COL6A1-204ENST00000486023 BRIP1Q9BX63 1249 aa23.05■■□□□ 1.28
COL6A1-204ENST00000486023 ZBTB3Q9H5J0 574 aa23.05■■□□□ 1.28
COL6A1-204ENST00000486023 BABAM1Q9NWV8 329 aa23.05■■□□□ 1.28
COL6A1-204ENST00000486023 KIAA1551Q9HCM1 1747 aa23.05■■□□□ 1.28
COL6A1-204ENST00000486023 CHL1O00533 1208 aa23.04■■□□□ 1.28
COL6A1-204ENST00000486023 GTF2E1P29083 439 aaPredicted RBP23.04■■□□□ 1.28
COL6A1-204ENST00000486023 TTLL6Q8N841 843 aa23.04■■□□□ 1.28
COL6A1-204ENST00000486023 MRS2Q9HD23 443 aa23.04■■□□□ 1.28
COL6A1-204ENST00000486023 ATP10DQ9P241 1426 aa23.04■■□□□ 1.28
COL6A1-204ENST00000486023 KDM3BQ7LBC6 1761 aa23.03■■□□□ 1.28
COL6A1-204ENST00000486023 TPTE2Q6XPS3 522 aa23.02■■□□□ 1.28
COL6A1-204ENST00000486023 GPBP1L1Q9HC44 474 aaPredicted RBP23.02■■□□□ 1.28
COL6A1-204ENST00000486023 AFDNP55196 1824 aaKnown RBP23.01■■□□□ 1.27
COL6A1-204ENST00000486023 GPTP24298 496 aa23.01■■□□□ 1.27
COL6A1-204ENST00000486023 AIMP1Q12904 312 aaKnown RBP23.01■■□□□ 1.27
COL6A1-204ENST00000486023 PROSER3Q2NL68 480 aa23.01■■□□□ 1.27
COL6A1-204ENST00000486023 MAP3K15Q6ZN16 1313 aa23.01■■□□□ 1.27
COL6A1-204ENST00000486023 SCN7AQ01118 1682 aa23■■□□□ 1.27
COL6A1-204ENST00000486023 C9orf131Q5VYM1 1079 aa23■■□□□ 1.27
COL6A1-204ENST00000486023 CFAP44Q96MT7 982 aa22.99■■□□□ 1.27
COL6A1-204ENST00000486023 ERVV-1B6SEH8 477 aa22.98■■□□□ 1.27
COL6A1-204ENST00000486023 MBIPQ9NS73 344 aa22.98■■□□□ 1.27
COL6A1-204ENST00000486023 ELL2O00472 640 aaPredicted RBP22.97■■□□□ 1.27
COL6A1-204ENST00000486023 RASSF7Q02833 373 aa22.97■■□□□ 1.27
COL6A1-204ENST00000486023 PDIA6Q15084 440 aa22.97■■□□□ 1.27
COL6A1-204ENST00000486023 RNF181Q9P0P0 153 aa22.97■■□□□ 1.27
COL6A1-204ENST00000486023 PDZRN3Q9UPQ7 1066 aa22.97■■□□□ 1.27
COL6A1-204ENST00000486023 ERBB4Q15303 1308 aa22.97■■□□□ 1.27
COL6A1-204ENST00000486023 C21orf2O43822 256 aa22.96■■□□□ 1.27
COL6A1-204ENST00000486023 HDGFL1Q5TGJ6 251 aa22.96■■□□□ 1.27
COL6A1-204ENST00000486023 COPS6Q7L5N1 327 aa22.96■■□□□ 1.27
COL6A1-204ENST00000486023 NUTM1Q86Y26 1132 aa22.96■■□□□ 1.27
COL6A1-204ENST00000486023 SALL2Q9Y467 1007 aaPredicted RBP22.96■■□□□ 1.27
COL6A1-204ENST00000486023 NRXN2Q9P2S2 1712 aa22.96■■□□□ 1.27
COL6A1-204ENST00000486023 LAMB4A4D0S4 1761 aa22.95■■□□□ 1.26
COL6A1-204ENST00000486023 CALD1Q05682 793 aaKnown RBP22.95■■□□□ 1.26
COL6A1-204ENST00000486023 XAGE3Q8WTP9 111 aa22.95■■□□□ 1.26
COL6A1-204ENST00000486023 CHPF2Q9P2E5 772 aa22.95■■□□□ 1.26
COL6A1-204ENST00000486023 RGL2O15211 777 aa22.94■■□□□ 1.26
COL6A1-204ENST00000486023 GNAI1P63096 354 aa22.94■■□□□ 1.26
COL6A1-204ENST00000486023 DUSP27Q5VZP5 1158 aa22.94■■□□□ 1.26
COL6A1-204ENST00000486023 MASTLQ96GX5 879 aa22.94■■□□□ 1.26
COL6A1-204ENST00000486023 ADCY9O60503 1353 aa22.93■■□□□ 1.26
COL6A1-204ENST00000486023 SRGNP10124 158 aa22.93■■□□□ 1.26
COL6A1-204ENST00000486023 C1QTNF8P60827 252 aa22.93■■□□□ 1.26
COL6A1-204ENST00000486023 ERFEQ4G0M1 354 aa22.93■■□□□ 1.26
COL6A1-204ENST00000486023 CNKSR1Q969H4 720 aa22.93■■□□□ 1.26
COL6A1-204ENST00000486023 ZNF428Q96B54 188 aa22.93■■□□□ 1.26
COL6A1-204ENST00000486023 NYXQ9GZU5 481 aa22.93■■□□□ 1.26
COL6A1-204ENST00000486023 BCORQ6W2J9 1755 aa22.93■■□□□ 1.26
COL6A1-204ENST00000486023 SUSD4Q5VX71 490 aa22.92■■□□□ 1.26
COL6A1-204ENST00000486023 GIGYF2Q6Y7W6 1299 aaKnown RBP22.92■■□□□ 1.26
COL6A1-204ENST00000486023 LRP10Q7Z4F1 713 aa22.92■■□□□ 1.26
COL6A1-204ENST00000486023 DDX21Q9NR30 783 aaKnown RBP eCLIP22.92■■□□□ 1.26
COL6A1-204ENST00000486023 IFT57Q9NWB7 429 aa22.92■■□□□ 1.26
COL6A1-204ENST00000486023 STYK1Q6J9G0 422 aa22.91■■□□□ 1.26
COL6A1-204ENST00000486023 PRPF40BQ6NWY9 871 aaKnown RBP22.91■■□□□ 1.26
COL6A1-204ENST00000486023 FAM9BQ8IZU0 186 aa22.91■■□□□ 1.26
COL6A1-204ENST00000486023 BRCA1P38398 1863 aaKnown RBP22.9■■□□□ 1.26
COL6A1-204ENST00000486023 UBN2Q6ZU65 1347 aa22.9■■□□□ 1.26
COL6A1-204ENST00000486023 ZNF853P0CG23 659 aa22.9■■□□□ 1.26
COL6A1-204ENST00000486023 NPR1P16066 1061 aa22.9■■□□□ 1.26
COL6A1-204ENST00000486023 ZNF34Q8IZ26 560 aa22.9■■□□□ 1.26
COL6A1-204ENST00000486023 PPP1R42Q7Z4L9 355 aa22.88■■□□□ 1.25
COL6A1-204ENST00000486023 DBF4Q9UBU7 674 aaPredicted RBP22.88■■□□□ 1.25
COL6A1-204ENST00000486023 NFKBIEO00221 500 aa22.87■■□□□ 1.25
COL6A1-204ENST00000486023 LMNB1P20700 586 aa22.87■■□□□ 1.25
COL6A1-204ENST00000486023 C8orf58Q8NAV2 365 aa22.87■■□□□ 1.25
COL6A1-204ENST00000486023 TSR2Q969E8 191 aaKnown RBP22.87■■□□□ 1.25
COL6A1-204ENST00000486023 ANKRD31Q8N7Z5 1873 aa22.87■■□□□ 1.25
COL6A1-204ENST00000486023 HOXB7P09629 217 aa22.86■■□□□ 1.25
COL6A1-204ENST00000486023 PRELPP51888 382 aa22.86■■□□□ 1.25
COL6A1-204ENST00000486023 UTP14AQ9BVJ6 771 aaKnown RBP22.86■■□□□ 1.25
COL6A1-204ENST00000486023 ABCC12Q96J65 1359 aa22.86■■□□□ 1.25
COL6A1-204ENST00000486023 ARFGEF1Q9Y6D6 1849 aa22.85■■□□□ 1.25
COL6A1-204ENST00000486023 PARP10Q53GL7 1025 aa22.85■■□□□ 1.25
COL6A1-204ENST00000486023 HSP90AB3PQ58FF7 597 aa22.85■■□□□ 1.25
COL6A1-204ENST00000486023 OLFM4Q6UX06 510 aa22.85■■□□□ 1.25
COL6A1-204ENST00000486023 ANKRD13DQ6ZTN6 518 aa22.85■■□□□ 1.25
COL6A1-204ENST00000486023 WWC1Q8IX03 1113 aa22.85■■□□□ 1.25
COL6A1-204ENST00000486023 RPGRQ92834 1020 aaKnown RBP22.85■■□□□ 1.25
COL6A1-204ENST00000486023 NMRK2Q9NPI5 230 aa22.85■■□□□ 1.25
COL6A1-204ENST00000486023 KLRG2A4D1S0 409 aaPredicted RBP22.84■■□□□ 1.25
COL6A1-204ENST00000486023 TCERG1O14776 1098 aaKnown RBP22.84■■□□□ 1.25
COL6A1-204ENST00000486023 NTSR2O95665 410 aa22.84■■□□□ 1.25
COL6A1-204ENST00000486023 HYPKQ9NX55 129 aa22.84■■□□□ 1.25
COL6A1-204ENST00000486023 ALDH1B1P30837 517 aa22.83■■□□□ 1.25
COL6A1-204ENST00000486023 TCIRG1Q13488 830 aa22.83■■□□□ 1.25
COL6A1-204ENST00000486023 TAOK3Q9H2K8 898 aa22.83■■□□□ 1.25
COL6A1-204ENST00000486023 TRMT112Q9UI30 125 aaKnown RBP22.83■■□□□ 1.25
COL6A1-204ENST00000486023 ATP5J2-PTCD1G3V325 749 aa22.82■■□□□ 1.24
COL6A1-204ENST00000486023 TSPYL6Q8N831 410 aa22.82■■□□□ 1.24
COL6A1-204ENST00000486023 COL11A2P13942 1736 aaPredicted RBP22.82■■□□□ 1.24
COL6A1-204ENST00000486023 KIF3CO14782 793 aa22.81■■□□□ 1.24
COL6A1-204ENST00000486023 CCDC27Q2M243 656 aa22.81■■□□□ 1.24
COL6A1-204ENST00000486023 CCDC93Q567U6 631 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms