RNA–Protein interactions for RNA: ENST00000484729.2

HLA-DQB1-208, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

Gene HLA-DQB1, Length 783 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-208ENST00000484729 PRDM10Q9NQV6 1147 aa20.64■□□□□ 0.89
HLA-DQB1-208ENST00000484729 IQCA1LA6NCM1 817 aa20.63■□□□□ 0.89
HLA-DQB1-208ENST00000484729 CAMTA2O94983 1202 aa20.63■□□□□ 0.89
HLA-DQB1-208ENST00000484729 IL17REQ8NFR9 667 aa20.63■□□□□ 0.89
HLA-DQB1-208ENST00000484729 AIDAQ96BJ3 306 aa20.63■□□□□ 0.89
HLA-DQB1-208ENST00000484729 IL6STP40189 918 aaPredicted RBP20.62■□□□□ 0.89
HLA-DQB1-208ENST00000484729 CTCFP49711 727 aaPredicted RBP20.62■□□□□ 0.89
HLA-DQB1-208ENST00000484729 ST5P78524 1137 aa20.62■□□□□ 0.89
HLA-DQB1-208ENST00000484729 TEFQ10587 303 aa20.62■□□□□ 0.89
HLA-DQB1-208ENST00000484729 EAPPQ56P03 285 aaPredicted RBP20.62■□□□□ 0.89
HLA-DQB1-208ENST00000484729 MASTLQ96GX5 879 aa20.62■□□□□ 0.89
HLA-DQB1-208ENST00000484729 TEX13AQ9BXU3 409 aaPredicted RBP20.62■□□□□ 0.89
HLA-DQB1-208ENST00000484729 NPC1L1Q9UHC9 1359 aa20.61■□□□□ 0.89
HLA-DQB1-208ENST00000484729 TMEM88BA6NKF7 163 aa20.61■□□□□ 0.89
HLA-DQB1-208ENST00000484729 ITGBL1O95965 494 aaPredicted RBP20.61■□□□□ 0.89
HLA-DQB1-208ENST00000484729 L3MBTL3Q96JM7 780 aaPredicted RBP20.61■□□□□ 0.89
HLA-DQB1-208ENST00000484729 U2SURPO15042 1029 aaKnown RBP20.6■□□□□ 0.89
HLA-DQB1-208ENST00000484729 PIP4K2AP48426 406 aaPredicted RBP20.6■□□□□ 0.89
HLA-DQB1-208ENST00000484729 LBX1P52954 281 aa20.6■□□□□ 0.89
HLA-DQB1-208ENST00000484729 SOGA3Q5TF21 947 aa20.6■□□□□ 0.89
HLA-DQB1-208ENST00000484729 C7orf43Q8WVR3 580 aa20.6■□□□□ 0.89
HLA-DQB1-208ENST00000484729 CLEC11AQ9Y240 323 aa20.6■□□□□ 0.89
HLA-DQB1-208ENST00000484729 COL3A1P02461 1466 aaPredicted RBP20.6■□□□□ 0.89
HLA-DQB1-208ENST00000484729 ZNF541Q9H0D2 1346 aa20.59■□□□□ 0.89
HLA-DQB1-208ENST00000484729 KCNQ3O43525 872 aa20.59■□□□□ 0.89
HLA-DQB1-208ENST00000484729 OLFM4Q6UX06 510 aa20.59■□□□□ 0.89
HLA-DQB1-208ENST00000484729 NPM2Q86SE8 214 aaKnown RBP20.59■□□□□ 0.89
HLA-DQB1-208ENST00000484729 DZIP3Q86Y13 1208 aaKnown RBP20.59■□□□□ 0.89
HLA-DQB1-208ENST00000484729 ZNF277Q9NRM2 450 aaPredicted RBP20.59■□□□□ 0.89
HLA-DQB1-208ENST00000484729 WBP1LQ9NX94 342 aa20.59■□□□□ 0.89
HLA-DQB1-208ENST00000484729 CCDC93Q567U6 631 aa20.58■□□□□ 0.89
HLA-DQB1-208ENST00000484729 FMNL2Q96PY5 1086 aa20.58■□□□□ 0.89
HLA-DQB1-208ENST00000484729 SCN4AP35499 1836 aa20.57■□□□□ 0.88
HLA-DQB1-208ENST00000484729 ARFGEF2Q9Y6D5 1785 aa20.57■□□□□ 0.88
HLA-DQB1-208ENST00000484729 GNAT3A8MTJ3 354 aa20.57■□□□□ 0.88
HLA-DQB1-208ENST00000484729 NBPF5PQ86XG9 351 aaPredicted RBP20.57■□□□□ 0.88
HLA-DQB1-208ENST00000484729 FKBP4Q02790 459 aaKnown RBP eCLIP20.56■□□□□ 0.88
HLA-DQB1-208ENST00000484729 HACL1Q9UJ83 578 aa20.56■□□□□ 0.88
HLA-DQB1-208ENST00000484729 SIPA1L3O60292 1781 aaPredicted RBP20.55■□□□□ 0.88
HLA-DQB1-208ENST00000484729 NPR1P16066 1061 aa20.55■□□□□ 0.88
HLA-DQB1-208ENST00000484729 EPHX2P34913 555 aa20.55■□□□□ 0.88
HLA-DQB1-208ENST00000484729 MAP1SQ66K74 1059 aaPredicted RBP20.55■□□□□ 0.88
HLA-DQB1-208ENST00000484729 USP16Q9Y5T5 823 aa20.55■□□□□ 0.88
HLA-DQB1-208ENST00000484729 RNF123Q5XPI4 1314 aa20.54■□□□□ 0.88
HLA-DQB1-208ENST00000484729 BCORQ6W2J9 1755 aa20.54■□□□□ 0.88
HLA-DQB1-208ENST00000484729 PRAMEF22A3QJZ6 481 aa20.54■□□□□ 0.88
HLA-DQB1-208ENST00000484729 HSPA8P11142 646 aaKnown RBP20.53■□□□□ 0.88
HLA-DQB1-208ENST00000484729 DEFB115Q30KQ5 88 aa20.53■□□□□ 0.88
HLA-DQB1-208ENST00000484729 CNTROBQ8N137 903 aa20.53■□□□□ 0.88
HLA-DQB1-208ENST00000484729 GAS2L2Q8NHY3 880 aa20.53■□□□□ 0.88
HLA-DQB1-208ENST00000484729 ADAMTSL1Q8N6G6 1762 aa20.52■□□□□ 0.88
HLA-DQB1-208ENST00000484729 RASSF10A6NK89 507 aa20.52■□□□□ 0.88
HLA-DQB1-208ENST00000484729 FAM177BA6PVY3 158 aa20.52■□□□□ 0.88
HLA-DQB1-208ENST00000484729 BTBD11A6QL63 1104 aa20.52■□□□□ 0.88
HLA-DQB1-208ENST00000484729 ABHD8Q96I13 439 aa20.52■□□□□ 0.88
HLA-DQB1-208ENST00000484729 CFAP53Q96M91 514 aa20.52■□□□□ 0.88
HLA-DQB1-208ENST00000484729 KLRG2A4D1S0 409 aaPredicted RBP20.5■□□□□ 0.87
HLA-DQB1-208ENST00000484729 FAM161AQ3B820 660 aa20.5■□□□□ 0.87
HLA-DQB1-208ENST00000484729 CLEC4GQ6UXB4 293 aa20.5■□□□□ 0.87
HLA-DQB1-208ENST00000484729 PNMA8AQ86V59 439 aaPredicted RBP20.5■□□□□ 0.87
HLA-DQB1-208ENST00000484729 SYNE4Q8N205 404 aa20.5■□□□□ 0.87
HLA-DQB1-208ENST00000484729 ABT1Q9ULW3 272 aaKnown RBP20.5■□□□□ 0.87
HLA-DQB1-208ENST00000484729 WDR33Q9C0J8 1336 aaKnown RBP20.5■□□□□ 0.87
HLA-DQB1-208ENST00000484729 CEMIPQ8WUJ3 1361 aa20.49■□□□□ 0.87
HLA-DQB1-208ENST00000484729 FZD9O00144 591 aa20.49■□□□□ 0.87
HLA-DQB1-208ENST00000484729 IARSP41252 1262 aaKnown RBP20.49■□□□□ 0.87
HLA-DQB1-208ENST00000484729 RTKN2Q8IZC4 609 aa20.49■□□□□ 0.87
HLA-DQB1-208ENST00000484729 PHACTR3Q96KR7 559 aa20.49■□□□□ 0.87
HLA-DQB1-208ENST00000484729 NIP7Q9Y221 180 aaKnown RBP eCLIP20.49■□□□□ 0.87
HLA-DQB1-208ENST00000484729 SLC34A2O95436 690 aa20.48■□□□□ 0.87
HLA-DQB1-208ENST00000484729 PRKAR2BP31323 418 aa20.48■□□□□ 0.87
HLA-DQB1-208ENST00000484729 FMR1Q06787 632 aaKnown RBP eCLIP20.48■□□□□ 0.87
HLA-DQB1-208ENST00000484729 TPTE2Q6XPS3 522 aa20.48■□□□□ 0.87
HLA-DQB1-208ENST00000484729 ZNF652Q9Y2D9 606 aa20.48■□□□□ 0.87
HLA-DQB1-208ENST00000484729 MAP2K1Q02750 393 aaPredicted RBP20.47■□□□□ 0.87
HLA-DQB1-208ENST00000484729 NBPF26B4DH59 902 aa20.46■□□□□ 0.87
HLA-DQB1-208ENST00000484729 NBPF10Q6P3W6 841 aaKnown RBP20.46■□□□□ 0.87
HLA-DQB1-208ENST00000484729 GPC2Q8N158 579 aa20.46■□□□□ 0.87
HLA-DQB1-208ENST00000484729 NBPF15Q8N660 670 aa20.46■□□□□ 0.87
HLA-DQB1-208ENST00000484729 NUDCQ9Y266 331 aa20.46■□□□□ 0.87
HLA-DQB1-208ENST00000484729 GJA3Q9Y6H8 435 aa20.46■□□□□ 0.87
HLA-DQB1-208ENST00000484729 HLFQ16534 295 aa20.45■□□□□ 0.86
HLA-DQB1-208ENST00000484729 RSPH6AQ9H0K4 717 aa20.45■□□□□ 0.86
HLA-DQB1-208ENST00000484729 DDX21Q9NR30 783 aaKnown RBP eCLIP20.45■□□□□ 0.86
HLA-DQB1-208ENST00000484729 SNRPA1P09661 255 aaKnown RBP20.44■□□□□ 0.86
HLA-DQB1-208ENST00000484729 ALDH1B1P30837 517 aa20.44■□□□□ 0.86
HLA-DQB1-208ENST00000484729 GRM1Q13255 1194 aa20.44■□□□□ 0.86
HLA-DQB1-208ENST00000484729 PAXIP1Q6ZW49 1069 aaPredicted RBP20.44■□□□□ 0.86
HLA-DQB1-208ENST00000484729 COL4A5P29400 1685 aa20.43■□□□□ 0.86
HLA-DQB1-208ENST00000484729 U2AF1L5P0DN76 240 aaPredicted RBP20.43■□□□□ 0.86
HLA-DQB1-208ENST00000484729 GTF2E1P29083 439 aaPredicted RBP20.43■□□□□ 0.86
HLA-DQB1-208ENST00000484729 PPP2R1AP30153 589 aa20.43■□□□□ 0.86
HLA-DQB1-208ENST00000484729 U2AF1Q01081 240 aaKnown RBP eCLIP20.43■□□□□ 0.86
HLA-DQB1-208ENST00000484729 MCM10Q7L590 875 aa20.43■□□□□ 0.86
HLA-DQB1-208ENST00000484729 JDP2Q8WYK2 163 aa20.43■□□□□ 0.86
HLA-DQB1-208ENST00000484729 CCDC85CA6NKD9 419 aa20.42■□□□□ 0.86
HLA-DQB1-208ENST00000484729 CYP4F22Q6NT55 531 aa20.42■□□□□ 0.86
HLA-DQB1-208ENST00000484729 SLC51AQ86UW1 340 aa20.42■□□□□ 0.86
HLA-DQB1-208ENST00000484729 CAPNS2Q96L46 248 aa20.42■□□□□ 0.86
HLA-DQB1-208ENST00000484729 SNED1Q8TER0 1413 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms