RNA–Protein interactions for RNA: ENST00000483407.1

CSDE1-207, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 741 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-207ENST00000483407 POLD1P28340 1107 aa8.22□□□□□ -1.09
CSDE1-207ENST00000483407 DIXDC1Q155Q3 683 aa8.22□□□□□ -1.09
CSDE1-207ENST00000483407 ZNF827Q17R98 1081 aa8.22□□□□□ -1.09
CSDE1-207ENST00000483407 PROCA1Q8NCQ7 364 aaPredicted RBP8.22□□□□□ -1.09
CSDE1-207ENST00000483407 SYTL4Q96C24 671 aaPredicted RBP8.22□□□□□ -1.09
CSDE1-207ENST00000483407 LRRC4BQ9NT99 713 aa8.22□□□□□ -1.09
CSDE1-207ENST00000483407 MON2Q7Z3U7 1717 aa8.22□□□□□ -1.09
CSDE1-207ENST00000483407 NHSQ6T4R5 1651 aa8.21□□□□□ -1.09
CSDE1-207ENST00000483407 HOXC9P31274 260 aa8.21□□□□□ -1.1
CSDE1-207ENST00000483407 ZNF784Q8NCA9 323 aaPredicted RBP8.21□□□□□ -1.1
CSDE1-207ENST00000483407 TFCP2L1Q9NZI6 479 aa8.21□□□□□ -1.1
CSDE1-207ENST00000483407 MAP3K19Q56UN5 1328 aa8.21□□□□□ -1.1
CSDE1-207ENST00000483407 MAP3K5Q99683 1374 aa8.21□□□□□ -1.1
CSDE1-207ENST00000483407 RGPD5Q99666 1765 aa8.2□□□□□ -1.1
CSDE1-207ENST00000483407 SENP3-EIF4A1A0A087X0R7 540 aa8.2□□□□□ -1.1
CSDE1-207ENST00000483407 ST20-MTHFSA0A0A6YYL1 179 aa8.2□□□□□ -1.1
CSDE1-207ENST00000483407 TRIM6-TRIM34B2RNG4 842 aa8.2□□□□□ -1.1
CSDE1-207ENST00000483407 HMGB2P26583 209 aaKnown RBP8.2□□□□□ -1.1
CSDE1-207ENST00000483407 GPR162Q16538 588 aa8.2□□□□□ -1.1
CSDE1-207ENST00000483407 NUDT18Q6ZVK8 323 aa8.2□□□□□ -1.1
CSDE1-207ENST00000483407 ZCRB1Q8TBF4 217 aaKnown RBP8.2□□□□□ -1.1
CSDE1-207ENST00000483407 TESK2Q96S53 571 aa8.2□□□□□ -1.1
CSDE1-207ENST00000483407 TBC1D2Q9BYX2 928 aa8.2□□□□□ -1.1
CSDE1-207ENST00000483407 POLR3EQ9NVU0 708 aa8.2□□□□□ -1.1
CSDE1-207ENST00000483407 MYOM1P52179 1685 aa8.2□□□□□ -1.1
CSDE1-207ENST00000483407 USP54Q70EL1 1684 aa8.2□□□□□ -1.1
CSDE1-207ENST00000483407 ANKRD36BQ8N2N9 1353 aa8.2□□□□□ -1.1
CSDE1-207ENST00000483407 C3orf80F5H4A9 247 aa8.19□□□□□ -1.1
CSDE1-207ENST00000483407 CLK2P49760 499 aaKnown RBP8.19□□□□□ -1.1
CSDE1-207ENST00000483407 ANKRD13DQ6ZTN6 518 aa8.19□□□□□ -1.1
CSDE1-207ENST00000483407 RAPGEF4Q8WZA2 1011 aa8.19□□□□□ -1.1
CSDE1-207ENST00000483407 CGNL1Q0VF96 1302 aa8.19□□□□□ -1.1
CSDE1-207ENST00000483407 RTL1A6NKG5 1358 aa8.19□□□□□ -1.1
CSDE1-207ENST00000483407 A6NJR5 290 aa8.18□□□□□ -1.1
CSDE1-207ENST00000483407 NBPF26B4DH59 902 aa8.18□□□□□ -1.1
CSDE1-207ENST00000483407 CD46P15529 392 aa8.18□□□□□ -1.1
CSDE1-207ENST00000483407 DNAJB2P25686 324 aa8.18□□□□□ -1.1
CSDE1-207ENST00000483407 TMF1P82094 1093 aa8.18□□□□□ -1.1
CSDE1-207ENST00000483407 MCM6Q14566 821 aa8.18□□□□□ -1.1
CSDE1-207ENST00000483407 PACS2Q86VP3 889 aa8.18□□□□□ -1.1
CSDE1-207ENST00000483407 SULF1Q8IWU6 871 aa8.18□□□□□ -1.1
CSDE1-207ENST00000483407 TATDN2Q93075 761 aa8.18□□□□□ -1.1
CSDE1-207ENST00000483407 HCSTQ9UBK5 93 aa8.18□□□□□ -1.1
CSDE1-207ENST00000483407 CCNL1Q9UK58 526 aaPredicted RBP8.18□□□□□ -1.1
CSDE1-207ENST00000483407 PNPLA7Q6ZV29 1317 aa8.18□□□□□ -1.1
CSDE1-207ENST00000483407 UTRNP46939 3433 aa8.18□□□□□ -1.1
CSDE1-207ENST00000483407 USP47Q96K76 1375 aa8.18□□□□□ -1.1
CSDE1-207ENST00000483407 SMG6Q86US8 1419 aaKnown RBP8.18□□□□□ -1.1
CSDE1-207ENST00000483407 PAPPAQ13219 1627 aa8.18□□□□□ -1.1
CSDE1-207ENST00000483407 TATP17735 454 aaPredicted RBP8.17□□□□□ -1.1
CSDE1-207ENST00000483407 FBLN1P23142 703 aa8.17□□□□□ -1.1
CSDE1-207ENST00000483407 KCNQ4P56696 695 aa8.17□□□□□ -1.1
CSDE1-207ENST00000483407 RRS1Q15050 365 aaKnown RBP8.17□□□□□ -1.1
CSDE1-207ENST00000483407 CDCA8Q53HL2 280 aa8.17□□□□□ -1.1
CSDE1-207ENST00000483407 SPIRE2Q8WWL2 714 aa8.17□□□□□ -1.1
CSDE1-207ENST00000483407 TMEM134Q9H6X4 195 aa8.17□□□□□ -1.1
CSDE1-207ENST00000483407 LTN1O94822 1766 aa8.17□□□□□ -1.1
CSDE1-207ENST00000483407 BTAF1O14981 1849 aa8.16□□□□□ -1.1
CSDE1-207ENST00000483407 FYB1O15117 783 aa8.16□□□□□ -1.1
CSDE1-207ENST00000483407 TUSC1Q2TAM9 212 aa8.16□□□□□ -1.1
CSDE1-207ENST00000483407 NBPF6Q5VWK0 638 aa8.16□□□□□ -1.1
CSDE1-207ENST00000483407 NBPF4Q96M43 638 aa8.16□□□□□ -1.1
CSDE1-207ENST00000483407 GGNBP2Q9H3C7 697 aa8.16□□□□□ -1.1
CSDE1-207ENST00000483407 PNMA3Q9UL41 463 aa8.16□□□□□ -1.1
CSDE1-207ENST00000483407 FAM208AQ9UK61 1670 aaKnown RBP8.15□□□□□ -1.1
CSDE1-207ENST00000483407 MEGF6O75095 1541 aa8.15□□□□□ -1.1
CSDE1-207ENST00000483407 NSD2O96028 1365 aa8.15□□□□□ -1.1
CSDE1-207ENST00000483407 PCDH11XQ9BZA7 1347 aa8.15□□□□□ -1.1
CSDE1-207ENST00000483407 PCDH11YQ9BZA8 1340 aa8.15□□□□□ -1.1
CSDE1-207ENST00000483407 GRIN3BO60391 1043 aa8.15□□□□□ -1.1
CSDE1-207ENST00000483407 C1QTNF8P60827 252 aa8.15□□□□□ -1.1
CSDE1-207ENST00000483407 USHBP1Q8N6Y0 703 aa8.15□□□□□ -1.1
CSDE1-207ENST00000483407 FLAD1Q8NFF5 587 aa8.15□□□□□ -1.1
CSDE1-207ENST00000483407 FLT4P35916 1363 aa8.14□□□□□ -1.11
CSDE1-207ENST00000483407 KIF24Q5T7B8 1368 aa8.14□□□□□ -1.11
CSDE1-207ENST00000483407 PROX2Q3B8N5 592 aa8.14□□□□□ -1.11
CSDE1-207ENST00000483407 HSP90AB2PQ58FF8 381 aa8.14□□□□□ -1.11
CSDE1-207ENST00000483407 PPP2R2DQ66LE6 453 aa8.14□□□□□ -1.11
CSDE1-207ENST00000483407 RIC3Q7Z5B4 369 aa8.14□□□□□ -1.11
CSDE1-207ENST00000483407 COL23A1Q86Y22 540 aaPredicted RBP8.14□□□□□ -1.11
CSDE1-207ENST00000483407 NLGN2Q8NFZ4 835 aa8.14□□□□□ -1.11
CSDE1-207ENST00000483407 CLUAP1Q96AJ1 413 aa8.14□□□□□ -1.11
CSDE1-207ENST00000483407 C1orf115Q9H7X2 142 aa8.14□□□□□ -1.11
CSDE1-207ENST00000483407 LIMD1Q9UGP4 676 aa8.14□□□□□ -1.11
CSDE1-207ENST00000483407 INSRP06213 1382 aa8.13□□□□□ -1.11
CSDE1-207ENST00000483407 SPTLC1O15269 473 aa8.13□□□□□ -1.11
CSDE1-207ENST00000483407 GIGYF1O75420 1035 aaPredicted RBP8.13□□□□□ -1.11
CSDE1-207ENST00000483407 GJA5P36382 358 aa8.13□□□□□ -1.11
CSDE1-207ENST00000483407 RFC5P40937 340 aa8.13□□□□□ -1.11
CSDE1-207ENST00000483407 LSM11P83369 360 aaKnown RBP eCLIP8.13□□□□□ -1.11
CSDE1-207ENST00000483407 BANK1Q8NDB2 785 aa8.13□□□□□ -1.11
CSDE1-207ENST00000483407 SMARCC1Q92922 1105 aaPredicted RBP8.13□□□□□ -1.11
CSDE1-207ENST00000483407 KCNK17Q96T54 332 aa8.13□□□□□ -1.11
CSDE1-207ENST00000483407 PALLDQ8WX93 1383 aa8.12□□□□□ -1.11
CSDE1-207ENST00000483407 SPDYE5A6NIY4 337 aa8.12□□□□□ -1.11
CSDE1-207ENST00000483407 DDX11L8A8MPP1 907 aa8.12□□□□□ -1.11
CSDE1-207ENST00000483407 TRAK2O60296 914 aa8.12□□□□□ -1.11
CSDE1-207ENST00000483407 MSL1Q68DK7 614 aa8.12□□□□□ -1.11
CSDE1-207ENST00000483407 MPRIPQ6WCQ1 1025 aa8.12□□□□□ -1.11
CSDE1-207ENST00000483407 ZBED2Q9BTP6 218 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms