RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 DDX19BQ9UMR2 479 aa10.47□□□□□ -0.73
USP4-210ENST00000483212 CNTNAP4Q9C0A0 1308 aa10.47□□□□□ -0.73
USP4-210ENST00000483212 IBTKQ9P2D0 1353 aaPredicted RBP10.47□□□□□ -0.73
USP4-210ENST00000483212 RGPD3A6NKT7 1758 aaPredicted RBP10.47□□□□□ -0.73
USP4-210ENST00000483212 RGPD4Q7Z3J3 1758 aa10.47□□□□□ -0.73
USP4-210ENST00000483212 ARFGEF2Q9Y6D5 1785 aa10.47□□□□□ -0.73
USP4-210ENST00000483212 TAF1LQ8IZX4 1826 aa10.47□□□□□ -0.73
USP4-210ENST00000483212 MYH14Q7Z406 1995 aaKnown RBP10.46□□□□□ -0.73
USP4-210ENST00000483212 IL6STP40189 918 aaPredicted RBP10.46□□□□□ -0.73
USP4-210ENST00000483212 EIF5P55010 431 aaKnown RBP10.46□□□□□ -0.73
USP4-210ENST00000483212 KCNQ4P56696 695 aa10.46□□□□□ -0.73
USP4-210ENST00000483212 BEND3Q5T5X7 828 aa10.46□□□□□ -0.73
USP4-210ENST00000483212 TTLL7Q6ZT98 887 aa10.46□□□□□ -0.73
USP4-210ENST00000483212 ITPRIPQ8IWB1 547 aa10.46□□□□□ -0.73
USP4-210ENST00000483212 DNAAF4Q8WXU2 420 aa10.46□□□□□ -0.73
USP4-210ENST00000483212 LRRC4BQ9NT99 713 aa10.46□□□□□ -0.73
USP4-210ENST00000483212 CCDC87Q9NVE4 849 aa10.46□□□□□ -0.73
USP4-210ENST00000483212 PPP4R2Q9NY27 417 aa10.46□□□□□ -0.73
USP4-210ENST00000483212 C4BP0C0L5 1744 aa10.45□□□□□ -0.74
USP4-210ENST00000483212 CCT4P50991 539 aaKnown RBP10.45□□□□□ -0.74
USP4-210ENST00000483212 AIMP1Q12904 312 aaKnown RBP10.45□□□□□ -0.74
USP4-210ENST00000483212 PROM2Q8N271 834 aa10.45□□□□□ -0.74
USP4-210ENST00000483212 PLBD2Q8NHP8 589 aa10.45□□□□□ -0.74
USP4-210ENST00000483212 ZBTB40Q9NUA8 1239 aa10.45□□□□□ -0.74
USP4-210ENST00000483212 CCNL1Q9UK58 526 aaPredicted RBP10.45□□□□□ -0.74
USP4-210ENST00000483212 MAP3K2Q9Y2U5 619 aa10.45□□□□□ -0.74
USP4-210ENST00000483212 PLSCR1O15162 318 aa10.44□□□□□ -0.74
USP4-210ENST00000483212 DDX58O95786 925 aaKnown RBP10.44□□□□□ -0.74
USP4-210ENST00000483212 IGKV5-2P06315 115 aa10.44□□□□□ -0.74
USP4-210ENST00000483212 AAMPQ13685 434 aa10.44□□□□□ -0.74
USP4-210ENST00000483212 SLC27A3Q5K4L6 730 aa10.44□□□□□ -0.74
USP4-210ENST00000483212 RC3H1Q5TC82 1133 aaKnown RBP10.44□□□□□ -0.74
USP4-210ENST00000483212 SLC4A10Q6U841 1118 aa10.44□□□□□ -0.74
USP4-210ENST00000483212 ANKRD13DQ6ZTN6 518 aa10.44□□□□□ -0.74
USP4-210ENST00000483212 PIP4P2Q8N4L2 257 aa10.44□□□□□ -0.74
USP4-210ENST00000483212 METTL22Q9BUU2 404 aaPredicted RBP10.44□□□□□ -0.74
USP4-210ENST00000483212 AMIGO3Q86WK7 504 aa10.43□□□□□ -0.74
USP4-210ENST00000483212 MEIS3Q99687 375 aa10.43□□□□□ -0.74
USP4-210ENST00000483212 PCDHB15Q9Y5E8 787 aa10.43□□□□□ -0.74
USP4-210ENST00000483212 BCORQ6W2J9 1755 aa10.42□□□□□ -0.74
USP4-210ENST00000483212 COL15A1P39059 1388 aa10.42□□□□□ -0.74
USP4-210ENST00000483212 MAP3K15Q6ZN16 1313 aa10.42□□□□□ -0.74
USP4-210ENST00000483212 SCN7AQ01118 1682 aa10.42□□□□□ -0.74
USP4-210ENST00000483212 ALDH1L1O75891 902 aa10.42□□□□□ -0.74
USP4-210ENST00000483212 TXNRD1Q16881 649 aa10.42□□□□□ -0.74
USP4-210ENST00000483212 RIC3Q7Z5B4 369 aa10.42□□□□□ -0.74
USP4-210ENST00000483212 LINS1Q8NG48 757 aa10.42□□□□□ -0.74
USP4-210ENST00000483212 SRCIN1Q9C0H9 1055 aa10.42□□□□□ -0.74
USP4-210ENST00000483212 USP44Q9H0E7 712 aa10.42□□□□□ -0.74
USP4-210ENST00000483212 UTYO14607 1347 aa10.41□□□□□ -0.74
USP4-210ENST00000483212 NEURL1BA8MQ27 555 aa10.41□□□□□ -0.74
USP4-210ENST00000483212 RPS6KA4O75676 772 aa10.41□□□□□ -0.74
USP4-210ENST00000483212 APBA3O96018 575 aa10.41□□□□□ -0.74
USP4-210ENST00000483212 CWF19L2Q2TBE0 894 aaKnown RBP10.41□□□□□ -0.74
USP4-210ENST00000483212 B4GALNT3Q6L9W6 998 aa10.41□□□□□ -0.74
USP4-210ENST00000483212 MYD88Q99836 296 aa10.41□□□□□ -0.74
USP4-210ENST00000483212 ISCA1Q9BUE6 129 aa10.41□□□□□ -0.74
USP4-210ENST00000483212 ZBTB3Q9H5J0 574 aa10.41□□□□□ -0.74
USP4-210ENST00000483212 KDM2BQ8NHM5 1336 aa10.4□□□□□ -0.74
USP4-210ENST00000483212 ANKRD36CQ5JPF3 1778 aa10.4□□□□□ -0.74
USP4-210ENST00000483212 ERVV-1B6SEH8 477 aa10.4□□□□□ -0.74
USP4-210ENST00000483212 CAMTA2O94983 1202 aa10.4□□□□□ -0.74
USP4-210ENST00000483212 HLFQ16534 295 aa10.4□□□□□ -0.74
USP4-210ENST00000483212 GIGYF2Q6Y7W6 1299 aaKnown RBP10.4□□□□□ -0.74
USP4-210ENST00000483212 KIF6Q6ZMV9 814 aa10.4□□□□□ -0.74
USP4-210ENST00000483212 DZIP3Q86Y13 1208 aaKnown RBP10.4□□□□□ -0.74
USP4-210ENST00000483212 CHMP4BQ9H444 224 aaKnown RBP10.4□□□□□ -0.74
USP4-210ENST00000483212 TBC1D2BQ9UPU7 963 aa10.4□□□□□ -0.74
USP4-210ENST00000483212 C4AP0C0L4 1744 aa10.4□□□□□ -0.74
USP4-210ENST00000483212 UBR3Q6ZT12 1888 aa10.4□□□□□ -0.75
USP4-210ENST00000483212 RGL2O15211 777 aa10.39□□□□□ -0.75
USP4-210ENST00000483212 NBPF7P0C2Y1 421 aaPredicted RBP10.39□□□□□ -0.75
USP4-210ENST00000483212 CASP7P55210 303 aa10.39□□□□□ -0.75
USP4-210ENST00000483212 TRIM28Q13263 835 aaKnown RBP10.39□□□□□ -0.75
USP4-210ENST00000483212 TCIRG1Q13488 830 aa10.39□□□□□ -0.75
USP4-210ENST00000483212 GCKRQ14397 625 aa10.39□□□□□ -0.75
USP4-210ENST00000483212 SMIM5Q71RC9 77 aa10.39□□□□□ -0.75
USP4-210ENST00000483212 SIRT2Q8IXJ6 389 aa10.39□□□□□ -0.75
USP4-210ENST00000483212 CAMKK2Q96RR4 588 aa10.39□□□□□ -0.75
USP4-210ENST00000483212 C1orf115Q9H7X2 142 aa10.39□□□□□ -0.75
USP4-210ENST00000483212 ZNF330Q9Y3S2 320 aaPredicted RBP10.39□□□□□ -0.75
USP4-210ENST00000483212 A0A087WZG4 1122 aa10.38□□□□□ -0.75
USP4-210ENST00000483212 ATP5J2-PTCD1G3V325 749 aa10.38□□□□□ -0.75
USP4-210ENST00000483212 GNPATO15228 680 aa10.38□□□□□ -0.75
USP4-210ENST00000483212 IGHDP01880 384 aa10.38□□□□□ -0.75
USP4-210ENST00000483212 GNAI3P08754 354 aa10.38□□□□□ -0.75
USP4-210ENST00000483212 NEXNQ0ZGT2 675 aa10.38□□□□□ -0.75
USP4-210ENST00000483212 HDAC1Q13547 482 aaPredicted RBP10.38□□□□□ -0.75
USP4-210ENST00000483212 AKT1S1Q96B36 256 aa10.38□□□□□ -0.75
USP4-210ENST00000483212 KAZALD1Q96I82 304 aa10.38□□□□□ -0.75
USP4-210ENST00000483212 CCDC136Q96JN2 1154 aa10.38□□□□□ -0.75
USP4-210ENST00000483212 BCL2L12Q9HB09 334 aa10.38□□□□□ -0.75
USP4-210ENST00000483212 NUP98P52948 1817 aa10.37□□□□□ -0.75
USP4-210ENST00000483212 AFDNP55196 1824 aaKnown RBP10.37□□□□□ -0.75
USP4-210ENST00000483212 H7C1W4 665 aa10.37□□□□□ -0.75
USP4-210ENST00000483212 GRM8O00222 908 aa10.37□□□□□ -0.75
USP4-210ENST00000483212 ZNF827Q17R98 1081 aa10.37□□□□□ -0.75
USP4-210ENST00000483212 CEP85Q6P2H3 762 aa10.37□□□□□ -0.75
USP4-210ENST00000483212 ZNF34Q8IZ26 560 aa10.37□□□□□ -0.75
USP4-210ENST00000483212 ANKRD44Q8N8A2 993 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms