RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 COG6Q9Y2V7 657 aa12.84□□□□□ -0.35
USP39-215ENST00000481409 TAF1LQ8IZX4 1826 aa12.83□□□□□ -0.35
USP39-215ENST00000481409 CRKLP46109 303 aaKnown RBP12.83□□□□□ -0.36
USP39-215ENST00000481409 HSP90AB3PQ58FF7 597 aa12.83□□□□□ -0.36
USP39-215ENST00000481409 KIF6Q6ZMV9 814 aa12.83□□□□□ -0.36
USP39-215ENST00000481409 RIC3Q7Z5B4 369 aa12.83□□□□□ -0.36
USP39-215ENST00000481409 LINS1Q8NG48 757 aa12.83□□□□□ -0.36
USP39-215ENST00000481409 EXOC6Q8TAG9 804 aa12.83□□□□□ -0.36
USP39-215ENST00000481409 SRCIN1Q9C0H9 1055 aa12.83□□□□□ -0.36
USP39-215ENST00000481409 ADCY9O60503 1353 aa12.82□□□□□ -0.36
USP39-215ENST00000481409 TNS1Q9HBL0 1735 aaKnown RBP12.82□□□□□ -0.36
USP39-215ENST00000481409 ZBTB7BO15156 539 aaPredicted RBP12.82□□□□□ -0.36
USP39-215ENST00000481409 GNAI3P08754 354 aa12.82□□□□□ -0.36
USP39-215ENST00000481409 EIF5P55010 431 aaKnown RBP12.82□□□□□ -0.36
USP39-215ENST00000481409 IRX6P78412 446 aaPredicted RBP12.82□□□□□ -0.36
USP39-215ENST00000481409 ITPK1Q13572 414 aa12.82□□□□□ -0.36
USP39-215ENST00000481409 INTS5Q6P9B9 1019 aaKnown RBP12.82□□□□□ -0.36
USP39-215ENST00000481409 METTL22Q9BUU2 404 aaPredicted RBP12.82□□□□□ -0.36
USP39-215ENST00000481409 MAP3K2Q9Y2U5 619 aa12.82□□□□□ -0.36
USP39-215ENST00000481409 RPS6KA4O75676 772 aa12.81□□□□□ -0.36
USP39-215ENST00000481409 ANXA1P04083 346 aa12.81□□□□□ -0.36
USP39-215ENST00000481409 BEND3Q5T5X7 828 aa12.81□□□□□ -0.36
USP39-215ENST00000481409 SLC4A10Q6U841 1118 aa12.81□□□□□ -0.36
USP39-215ENST00000481409 PTF1AQ7RTS3 328 aa12.81□□□□□ -0.36
USP39-215ENST00000481409 ZBTB40Q9NUA8 1239 aa12.81□□□□□ -0.36
USP39-215ENST00000481409 ZBTB1Q9Y2K1 713 aa12.81□□□□□ -0.36
USP39-215ENST00000481409 MAP3K15Q6ZN16 1313 aa12.81□□□□□ -0.36
USP39-215ENST00000481409 ARFGEF2Q9Y6D5 1785 aa12.81□□□□□ -0.36
USP39-215ENST00000481409 NUP188Q5SRE5 1749 aa12.8□□□□□ -0.36
USP39-215ENST00000481409 APBA3O96018 575 aa12.8□□□□□ -0.36
USP39-215ENST00000481409 AIMP1Q12904 312 aaKnown RBP12.8□□□□□ -0.36
USP39-215ENST00000481409 TRIM28Q13263 835 aaKnown RBP12.8□□□□□ -0.36
USP39-215ENST00000481409 SF3B2Q13435 895 aaKnown RBP12.8□□□□□ -0.36
USP39-215ENST00000481409 CLEC4GQ6UXB4 293 aa12.8□□□□□ -0.36
USP39-215ENST00000481409 LINC00116Q8NCU8 138 aa12.8□□□□□ -0.36
USP39-215ENST00000481409 C4BP0C0L5 1744 aa12.79□□□□□ -0.36
USP39-215ENST00000481409 F6X3S4 739 aa12.79□□□□□ -0.36
USP39-215ENST00000481409 TXNRD1Q16881 649 aa12.79□□□□□ -0.36
USP39-215ENST00000481409 GIGYF2Q6Y7W6 1299 aaKnown RBP12.79□□□□□ -0.36
USP39-215ENST00000481409 TNNQ9UQP3 1299 aa12.79□□□□□ -0.36
USP39-215ENST00000481409 ZNF652Q9Y2D9 606 aa12.79□□□□□ -0.36
USP39-215ENST00000481409 RTCBQ9Y3I0 505 aaKnown RBP12.79□□□□□ -0.36
USP39-215ENST00000481409 MYH14Q7Z406 1995 aaKnown RBP12.79□□□□□ -0.36
USP39-215ENST00000481409 COL15A1P39059 1388 aa12.79□□□□□ -0.36
USP39-215ENST00000481409 TCIRG1Q13488 830 aa12.78□□□□□ -0.36
USP39-215ENST00000481409 DZIP3Q86Y13 1208 aaKnown RBP12.78□□□□□ -0.36
USP39-215ENST00000481409 CCDC191Q8NCU4 936 aa12.78□□□□□ -0.36
USP39-215ENST00000481409 AK7Q96M32 723 aa12.78□□□□□ -0.36
USP39-215ENST00000481409 UTYO14607 1347 aa12.78□□□□□ -0.36
USP39-215ENST00000481409 SSFA2P28290 1259 aa12.77□□□□□ -0.37
USP39-215ENST00000481409 BAG6P46379 1132 aa12.77□□□□□ -0.37
USP39-215ENST00000481409 RPAP2Q8IXW5 612 aaPredicted RBP12.77□□□□□ -0.37
USP39-215ENST00000481409 FLAD1Q8NFF5 587 aa12.77□□□□□ -0.37
USP39-215ENST00000481409 CCDC136Q96JN2 1154 aa12.77□□□□□ -0.37
USP39-215ENST00000481409 NEURL1BA8MQ27 555 aa12.76□□□□□ -0.37
USP39-215ENST00000481409 GNAI2P04899 355 aa12.76□□□□□ -0.37
USP39-215ENST00000481409 TTLL7Q6ZT98 887 aa12.76□□□□□ -0.37
USP39-215ENST00000481409 USP44Q9H0E7 712 aa12.76□□□□□ -0.37
USP39-215ENST00000481409 RWDD1Q9H446 243 aaPredicted RBP12.76□□□□□ -0.37
USP39-215ENST00000481409 ANKRD36CQ5JPF3 1778 aa12.76□□□□□ -0.37
USP39-215ENST00000481409 BCORQ6W2J9 1755 aa12.76□□□□□ -0.37
USP39-215ENST00000481409 GNPATO15228 680 aa12.75□□□□□ -0.37
USP39-215ENST00000481409 UBTFL1P0CB47 393 aaPredicted RBP12.75□□□□□ -0.37
USP39-215ENST00000481409 HSP90B1P14625 803 aaKnown RBP12.75□□□□□ -0.37
USP39-215ENST00000481409 PIP4K2AP48426 406 aaPredicted RBP12.75□□□□□ -0.37
USP39-215ENST00000481409 HDAC1Q13547 482 aaPredicted RBP12.75□□□□□ -0.37
USP39-215ENST00000481409 GCKRQ14397 625 aa12.75□□□□□ -0.37
USP39-215ENST00000481409 PARP10Q53GL7 1025 aa12.75□□□□□ -0.37
USP39-215ENST00000481409 MYD88Q99836 296 aa12.75□□□□□ -0.37
USP39-215ENST00000481409 ISCA1Q9BUE6 129 aa12.75□□□□□ -0.37
USP39-215ENST00000481409 LRRC4BQ9NT99 713 aa12.75□□□□□ -0.37
USP39-215ENST00000481409 CWC25Q9NXE8 425 aaPredicted RBP12.75□□□□□ -0.37
USP39-215ENST00000481409 C9orf78Q9NZ63 289 aaPredicted RBP12.75□□□□□ -0.37
USP39-215ENST00000481409 NARFQ9UHQ1 456 aa12.75□□□□□ -0.37
USP39-215ENST00000481409 NUP98P52948 1817 aa12.74□□□□□ -0.37
USP39-215ENST00000481409 GRM8O00222 908 aa12.74□□□□□ -0.37
USP39-215ENST00000481409 CAMTA2O94983 1202 aa12.74□□□□□ -0.37
USP39-215ENST00000481409 IGKV5-2P06315 115 aa12.74□□□□□ -0.37
USP39-215ENST00000481409 TRAPPC3LQ5T215 181 aa12.74□□□□□ -0.37
USP39-215ENST00000481409 PROM2Q8N271 834 aa12.74□□□□□ -0.37
USP39-215ENST00000481409 ZBTB3Q9H5J0 574 aa12.74□□□□□ -0.37
USP39-215ENST00000481409 ZNF330Q9Y3S2 320 aaPredicted RBP12.74□□□□□ -0.37
USP39-215ENST00000481409 UBR3Q6ZT12 1888 aa12.74□□□□□ -0.37
USP39-215ENST00000481409 AFDNP55196 1824 aaKnown RBP12.74□□□□□ -0.37
USP39-215ENST00000481409 SCN7AQ01118 1682 aa12.73□□□□□ -0.37
USP39-215ENST00000481409 ZPR1O75312 459 aa12.73□□□□□ -0.37
USP39-215ENST00000481409 HMMRO75330 724 aa12.73□□□□□ -0.37
USP39-215ENST00000481409 CENPQQ7L2Z9 268 aaPredicted RBP12.73□□□□□ -0.37
USP39-215ENST00000481409 CAMKK2Q96RR4 588 aa12.73□□□□□ -0.37
USP39-215ENST00000481409 MEIS3Q99687 375 aa12.73□□□□□ -0.37
USP39-215ENST00000481409 QSER1Q2KHR3 1735 aa12.72□□□□□ -0.37
USP39-215ENST00000481409 H7C1W4 665 aa12.72□□□□□ -0.37
USP39-215ENST00000481409 RFC4P35249 363 aa12.72□□□□□ -0.37
USP39-215ENST00000481409 CWF19L2Q2TBE0 894 aaKnown RBP12.72□□□□□ -0.37
USP39-215ENST00000481409 ZNF34Q8IZ26 560 aa12.72□□□□□ -0.37
USP39-215ENST00000481409 TBC1D2BQ9UPU7 963 aa12.72□□□□□ -0.37
USP39-215ENST00000481409 CDHR2Q9BYE9 1310 aa12.71□□□□□ -0.37
USP39-215ENST00000481409 USP42Q9H9J4 1324 aaKnown RBP12.71□□□□□ -0.37
USP39-215ENST00000481409 PCCAP05165 728 aaPredicted RBP12.71□□□□□ -0.37
USP39-215ENST00000481409 MTX1Q13505 466 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms