RNA–Protein interactions for RNA: ENST00000480563.1

TTC28-206, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 407 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-206ENST00000480563 GNAT3A8MTJ3 354 aa15.27■□□□□ 0.04
TTC28-206ENST00000480563 ITGBL1O95965 494 aaPredicted RBP15.27■□□□□ 0.04
TTC28-206ENST00000480563 CTCFP49711 727 aaPredicted RBP15.27■□□□□ 0.04
TTC28-206ENST00000480563 DZIP3Q86Y13 1208 aaKnown RBP15.27■□□□□ 0.04
TTC28-206ENST00000480563 C7orf43Q8WVR3 580 aa15.27■□□□□ 0.04
TTC28-206ENST00000480563 L3MBTL3Q96JM7 780 aaPredicted RBP15.27■□□□□ 0.04
TTC28-206ENST00000480563 FMNL2Q96PY5 1086 aa15.27■□□□□ 0.04
TTC28-206ENST00000480563 UBR2Q8IWV8 1755 aa15.26■□□□□ 0.03
TTC28-206ENST00000480563 DICER1Q9UPY3 1922 aaKnown RBP15.26■□□□□ 0.03
TTC28-206ENST00000480563 CCDC93Q567U6 631 aa15.26■□□□□ 0.03
TTC28-206ENST00000480563 EAPPQ56P03 285 aaPredicted RBP15.26■□□□□ 0.03
TTC28-206ENST00000480563 GAS2L2Q8NHY3 880 aa15.26■□□□□ 0.03
TTC28-206ENST00000480563 PCGF6Q9BYE7 350 aa15.26■□□□□ 0.03
TTC28-206ENST00000480563 CLEC11AQ9Y240 323 aa15.26■□□□□ 0.03
TTC28-206ENST00000480563 COL11A2P13942 1736 aaPredicted RBP15.26■□□□□ 0.03
TTC28-206ENST00000480563 NBPF5PQ86XG9 351 aaPredicted RBP15.25■□□□□ 0.03
TTC28-206ENST00000480563 SLX4Q8IY92 1834 aa15.24■□□□□ 0.03
TTC28-206ENST00000480563 U2SURPO15042 1029 aaKnown RBP15.24■□□□□ 0.03
TTC28-206ENST00000480563 NPR1P16066 1061 aa15.24■□□□□ 0.03
TTC28-206ENST00000480563 FKBP4Q02790 459 aaKnown RBP eCLIP15.24■□□□□ 0.03
TTC28-206ENST00000480563 WBP1LQ9NX94 342 aa15.24■□□□□ 0.03
TTC28-206ENST00000480563 HACL1Q9UJ83 578 aa15.24■□□□□ 0.03
TTC28-206ENST00000480563 SCN7AQ01118 1682 aa15.23■□□□□ 0.03
TTC28-206ENST00000480563 BTBD11A6QL63 1104 aa15.23■□□□□ 0.03
TTC28-206ENST00000480563 KCNQ3O43525 872 aa15.23■□□□□ 0.03
TTC28-206ENST00000480563 EPHX2P34913 555 aa15.23■□□□□ 0.03
TTC28-206ENST00000480563 PIP4K2AP48426 406 aaPredicted RBP15.23■□□□□ 0.03
TTC28-206ENST00000480563 LBX1P52954 281 aa15.23■□□□□ 0.03
TTC28-206ENST00000480563 CC2D1BQ5T0F9 858 aaKnown RBP15.23■□□□□ 0.03
TTC28-206ENST00000480563 CLEC4GQ6UXB4 293 aa15.23■□□□□ 0.03
TTC28-206ENST00000480563 ZNF277Q9NRM2 450 aaPredicted RBP15.23■□□□□ 0.03
TTC28-206ENST00000480563 USP16Q9Y5T5 823 aa15.23■□□□□ 0.03
TTC28-206ENST00000480563 VIRMAQ69YN4 1812 aaKnown RBP15.22■□□□□ 0.03
TTC28-206ENST00000480563 ZNF541Q9H0D2 1346 aa15.22■□□□□ 0.03
TTC28-206ENST00000480563 PER1O15534 1290 aaPredicted RBP15.22■□□□□ 0.03
TTC28-206ENST00000480563 DEFB115Q30KQ5 88 aa15.22■□□□□ 0.03
TTC28-206ENST00000480563 KLRG2A4D1S0 409 aaPredicted RBP15.21■□□□□ 0.03
TTC28-206ENST00000480563 OLFM4Q6UX06 510 aa15.21■□□□□ 0.03
TTC28-206ENST00000480563 TPTE2Q6XPS3 522 aa15.21■□□□□ 0.03
TTC28-206ENST00000480563 PNMA8AQ86V59 439 aaPredicted RBP15.21■□□□□ 0.03
TTC28-206ENST00000480563 RTKN2Q8IZC4 609 aa15.21■□□□□ 0.03
TTC28-206ENST00000480563 CNTROBQ8N137 903 aa15.21■□□□□ 0.03
TTC28-206ENST00000480563 ZNF652Q9Y2D9 606 aa15.21■□□□□ 0.03
TTC28-206ENST00000480563 RASSF10A6NK89 507 aa15.2■□□□□ 0.02
TTC28-206ENST00000480563 MAP1SQ66K74 1059 aaPredicted RBP15.2■□□□□ 0.02
TTC28-206ENST00000480563 SCN4AP35499 1836 aa15.2■□□□□ 0.02
TTC28-206ENST00000480563 KIF7Q2M1P5 1343 aa15.19■□□□□ 0.02
TTC28-206ENST00000480563 RNF123Q5XPI4 1314 aa15.19■□□□□ 0.02
TTC28-206ENST00000480563 PRAMEF22A3QJZ6 481 aa15.19■□□□□ 0.02
TTC28-206ENST00000480563 FZD9O00144 591 aa15.19■□□□□ 0.02
TTC28-206ENST00000480563 IARSP41252 1262 aaKnown RBP15.19■□□□□ 0.02
TTC28-206ENST00000480563 SYNE4Q8N205 404 aa15.19■□□□□ 0.02
TTC28-206ENST00000480563 PHACTR3Q96KR7 559 aa15.19■□□□□ 0.02
TTC28-206ENST00000480563 NIP7Q9Y221 180 aaKnown RBP eCLIP15.19■□□□□ 0.02
TTC28-206ENST00000480563 CEMIPQ8WUJ3 1361 aa15.19■□□□□ 0.02
TTC28-206ENST00000480563 FAM177BA6PVY3 158 aa15.18■□□□□ 0.02
TTC28-206ENST00000480563 HSPA8P11142 646 aaKnown RBP15.18■□□□□ 0.02
TTC28-206ENST00000480563 ALDH1B1P30837 517 aa15.18■□□□□ 0.02
TTC28-206ENST00000480563 MAP2K1Q02750 393 aaPredicted RBP15.18■□□□□ 0.02
TTC28-206ENST00000480563 CNGB1Q14028 1251 aaPredicted RBP15.18■□□□□ 0.02
TTC28-206ENST00000480563 GPC2Q8N158 579 aa15.18■□□□□ 0.02
TTC28-206ENST00000480563 ABHD8Q96I13 439 aa15.18■□□□□ 0.02
TTC28-206ENST00000480563 ABT1Q9ULW3 272 aaKnown RBP15.18■□□□□ 0.02
TTC28-206ENST00000480563 WDR33Q9C0J8 1336 aaKnown RBP15.17■□□□□ 0.02
TTC28-206ENST00000480563 SNRPA1P09661 255 aaKnown RBP15.17■□□□□ 0.02
TTC28-206ENST00000480563 CACNA1SQ13698 1873 aa15.16■□□□□ 0.02
TTC28-206ENST00000480563 COL3A1P02461 1466 aaPredicted RBP15.16■□□□□ 0.02
TTC28-206ENST00000480563 NBPF26B4DH59 902 aa15.16■□□□□ 0.02
TTC28-206ENST00000480563 RGL2O15211 777 aa15.16■□□□□ 0.02
TTC28-206ENST00000480563 GTF2E1P29083 439 aaPredicted RBP15.16■□□□□ 0.02
TTC28-206ENST00000480563 PRKAR2BP31323 418 aa15.16■□□□□ 0.02
TTC28-206ENST00000480563 NBPF10Q6P3W6 841 aaKnown RBP15.16■□□□□ 0.02
TTC28-206ENST00000480563 NBPF15Q8N660 670 aa15.16■□□□□ 0.02
TTC28-206ENST00000480563 JDP2Q8WYK2 163 aa15.16■□□□□ 0.02
TTC28-206ENST00000480563 ARFGEF2Q9Y6D5 1785 aa15.16■□□□□ 0.02
TTC28-206ENST00000480563 DDX21Q9NR30 783 aaKnown RBP eCLIP15.15■□□□□ 0.02
TTC28-206ENST00000480563 GJA3Q9Y6H8 435 aa15.15■□□□□ 0.02
TTC28-206ENST00000480563 SIPA1L3O60292 1781 aaPredicted RBP15.15■□□□□ 0.02
TTC28-206ENST00000480563 EIF6P56537 245 aaKnown RBP15.14■□□□□ 0.01
TTC28-206ENST00000480563 HLFQ16534 295 aa15.14■□□□□ 0.01
TTC28-206ENST00000480563 RTF1Q92541 710 aaKnown RBP15.14■□□□□ 0.01
TTC28-206ENST00000480563 PSMD1Q99460 953 aa15.14■□□□□ 0.01
TTC28-206ENST00000480563 BCORQ6W2J9 1755 aa15.13■□□□□ 0.01
TTC28-206ENST00000480563 ADAMTSL1Q8N6G6 1762 aa15.13■□□□□ 0.01
TTC28-206ENST00000480563 SLC34A2O95436 690 aa15.13■□□□□ 0.01
TTC28-206ENST00000480563 LMOD1P29536 600 aaPredicted RBP15.13■□□□□ 0.01
TTC28-206ENST00000480563 FAM161AQ3B820 660 aa15.13■□□□□ 0.01
TTC28-206ENST00000480563 MCM10Q7L590 875 aa15.13■□□□□ 0.01
TTC28-206ENST00000480563 RSPH6AQ9H0K4 717 aa15.13■□□□□ 0.01
TTC28-206ENST00000480563 FMR1Q06787 632 aaKnown RBP eCLIP15.12■□□□□ 0.01
TTC28-206ENST00000480563 CC2D2BQ6DHV5 1058 aa15.12■□□□□ 0.01
TTC28-206ENST00000480563 PAXIP1Q6ZW49 1069 aaPredicted RBP15.12■□□□□ 0.01
TTC28-206ENST00000480563 CAPNS2Q96L46 248 aa15.12■□□□□ 0.01
TTC28-206ENST00000480563 EPS15P42566 896 aa15.11■□□□□ 0.01
TTC28-206ENST00000480563 ECE1P42892 770 aa15.11■□□□□ 0.01
TTC28-206ENST00000480563 GRM1Q13255 1194 aa15.11■□□□□ 0.01
TTC28-206ENST00000480563 CRY2Q49AN0 593 aa15.11■□□□□ 0.01
TTC28-206ENST00000480563 GPR101Q96P66 508 aaPredicted RBP15.11■□□□□ 0.01
TTC28-206ENST00000480563 BEGAINQ9BUH8 593 aa15.11■□□□□ 0.01
TTC28-206ENST00000480563 NPC1L1Q9UHC9 1359 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms