RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 METTL22Q9BUU2 404 aaPredicted RBP22.2■■□□□ 1.14
UPF3A-206ENST00000480362 LRRC4BQ9NT99 713 aa22.2■■□□□ 1.14
UPF3A-206ENST00000480362 MYH14Q7Z406 1995 aaKnown RBP22.19■■□□□ 1.14
UPF3A-206ENST00000480362 KIF6Q6ZMV9 814 aa22.19■■□□□ 1.14
UPF3A-206ENST00000480362 ZBTB3Q9H5J0 574 aa22.19■■□□□ 1.14
UPF3A-206ENST00000480362 ZBTB40Q9NUA8 1239 aa22.19■■□□□ 1.14
UPF3A-206ENST00000480362 ATP10DQ9P241 1426 aa22.18■■□□□ 1.14
UPF3A-206ENST00000480362 TXNRD1Q16881 649 aa22.18■■□□□ 1.14
UPF3A-206ENST00000480362 MYD88Q99836 296 aa22.18■■□□□ 1.14
UPF3A-206ENST00000480362 TAF1LQ8IZX4 1826 aa22.17■■□□□ 1.14
UPF3A-206ENST00000480362 NEXNQ0ZGT2 675 aa22.17■■□□□ 1.14
UPF3A-206ENST00000480362 B4GALNT3Q6L9W6 998 aa22.17■■□□□ 1.14
UPF3A-206ENST00000480362 PROM2Q8N271 834 aa22.17■■□□□ 1.14
UPF3A-206ENST00000480362 LINS1Q8NG48 757 aa22.17■■□□□ 1.14
UPF3A-206ENST00000480362 CCDC136Q96JN2 1154 aa22.17■■□□□ 1.14
UPF3A-206ENST00000480362 MAP3K15Q6ZN16 1313 aa22.16■■□□□ 1.14
UPF3A-206ENST00000480362 RPS6KA4O75676 772 aa22.16■■□□□ 1.14
UPF3A-206ENST00000480362 ALDH1L1O75891 902 aa22.16■■□□□ 1.14
UPF3A-206ENST00000480362 DZIP3Q86Y13 1208 aaKnown RBP22.16■■□□□ 1.14
UPF3A-206ENST00000480362 TBC1D2BQ9UPU7 963 aa22.16■■□□□ 1.14
UPF3A-206ENST00000480362 N4BP2Q86UW6 1770 aaPredicted RBP22.16■■□□□ 1.14
UPF3A-206ENST00000480362 TNS1Q9HBL0 1735 aaKnown RBP22.16■■□□□ 1.14
UPF3A-206ENST00000480362 ARFGEF2Q9Y6D5 1785 aa22.15■■□□□ 1.14
UPF3A-206ENST00000480362 IGKV5-2P06315 115 aa22.15■■□□□ 1.14
UPF3A-206ENST00000480362 CWF19L2Q2TBE0 894 aaKnown RBP22.15■■□□□ 1.14
UPF3A-206ENST00000480362 ILDR2Q71H61 639 aa22.15■■□□□ 1.14
UPF3A-206ENST00000480362 MEIS3Q99687 375 aa22.15■■□□□ 1.14
UPF3A-206ENST00000480362 PCDHB15Q9Y5E8 787 aa22.14■■□□□ 1.13
UPF3A-206ENST00000480362 NUP188Q5SRE5 1749 aa22.14■■□□□ 1.13
UPF3A-206ENST00000480362 A0A087WZG4 1122 aa22.13■■□□□ 1.13
UPF3A-206ENST00000480362 ERVV-1B6SEH8 477 aa22.13■■□□□ 1.13
UPF3A-206ENST00000480362 GNPATO15228 680 aa22.13■■□□□ 1.13
UPF3A-206ENST00000480362 HMGB2P26583 209 aaKnown RBP22.13■■□□□ 1.13
UPF3A-206ENST00000480362 USP44Q9H0E7 712 aa22.13■■□□□ 1.13
UPF3A-206ENST00000480362 C4BP0C0L5 1744 aa22.13■■□□□ 1.13
UPF3A-206ENST00000480362 COL15A1P39059 1388 aa22.12■■□□□ 1.13
UPF3A-206ENST00000480362 NEURL1BA8MQ27 555 aa22.12■■□□□ 1.13
UPF3A-206ENST00000480362 ATP5J2-PTCD1G3V325 749 aa22.12■■□□□ 1.13
UPF3A-206ENST00000480362 HLFQ16534 295 aa22.12■■□□□ 1.13
UPF3A-206ENST00000480362 GIGYF2Q6Y7W6 1299 aaKnown RBP22.12■■□□□ 1.13
UPF3A-206ENST00000480362 AK7Q96M32 723 aa22.12■■□□□ 1.13
UPF3A-206ENST00000480362 RTCBQ9Y3I0 505 aaKnown RBP22.12■■□□□ 1.13
UPF3A-206ENST00000480362 GNAI3P08754 354 aa22.11■■□□□ 1.13
UPF3A-206ENST00000480362 TCIRG1Q13488 830 aa22.11■■□□□ 1.13
UPF3A-206ENST00000480362 SMIM5Q71RC9 77 aa22.11■■□□□ 1.13
UPF3A-206ENST00000480362 C1orf115Q9H7X2 142 aa22.11■■□□□ 1.13
UPF3A-206ENST00000480362 SF3B2Q13435 895 aaKnown RBP22.1■■□□□ 1.13
UPF3A-206ENST00000480362 CAMTA2O94983 1202 aa22.09■■□□□ 1.13
UPF3A-206ENST00000480362 GCKRQ14397 625 aa22.09■■□□□ 1.13
UPF3A-206ENST00000480362 C9orf78Q9NZ63 289 aaPredicted RBP22.09■■□□□ 1.13
UPF3A-206ENST00000480362 NBPF7P0C2Y1 421 aaPredicted RBP22.08■■□□□ 1.13
UPF3A-206ENST00000480362 UBTFL1P0CB47 393 aaPredicted RBP22.08■■□□□ 1.13
UPF3A-206ENST00000480362 EN1Q05925 392 aaPredicted RBP22.08■■□□□ 1.13
UPF3A-206ENST00000480362 HSP90AB3PQ58FF7 597 aa22.08■■□□□ 1.13
UPF3A-206ENST00000480362 CAMKK2Q96RR4 588 aa22.08■■□□□ 1.13
UPF3A-206ENST00000480362 ISCA1Q9BUE6 129 aa22.08■■□□□ 1.13
UPF3A-206ENST00000480362 GRM8O00222 908 aa22.07■■□□□ 1.12
UPF3A-206ENST00000480362 GNAI2P04899 355 aa22.07■■□□□ 1.12
UPF3A-206ENST00000480362 AMIGO3Q86WK7 504 aa22.07■■□□□ 1.12
UPF3A-206ENST00000480362 IBTKQ9P2D0 1353 aaPredicted RBP22.07■■□□□ 1.12
UPF3A-206ENST00000480362 RGPD3A6NKT7 1758 aaPredicted RBP22.07■■□□□ 1.12
UPF3A-206ENST00000480362 RGPD4Q7Z3J3 1758 aa22.07■■□□□ 1.12
UPF3A-206ENST00000480362 TRIM28Q13263 835 aaKnown RBP22.06■■□□□ 1.12
UPF3A-206ENST00000480362 EZH2Q15910 746 aaKnown RBP22.06■■□□□ 1.12
UPF3A-206ENST00000480362 TRAPPC3LQ5T215 181 aa22.06■■□□□ 1.12
UPF3A-206ENST00000480362 CCDC191Q8NCU4 936 aa22.06■■□□□ 1.12
UPF3A-206ENST00000480362 ARHGEF1Q92888 912 aaKnown RBP22.06■■□□□ 1.12
UPF3A-206ENST00000480362 CWC25Q9NXE8 425 aaPredicted RBP22.06■■□□□ 1.12
UPF3A-206ENST00000480362 AFDNP55196 1824 aaKnown RBP22.06■■□□□ 1.12
UPF3A-206ENST00000480362 UTYO14607 1347 aa22.06■■□□□ 1.12
UPF3A-206ENST00000480362 PHF14O94880 888 aa22.05■■□□□ 1.12
UPF3A-206ENST00000480362 IGHDP01880 384 aa22.05■■□□□ 1.12
UPF3A-206ENST00000480362 BAG6P46379 1132 aa22.05■■□□□ 1.12
UPF3A-206ENST00000480362 NARFQ9UHQ1 456 aa22.05■■□□□ 1.12
UPF3A-206ENST00000480362 LRRFIP2Q9Y608 721 aaKnown RBP22.05■■□□□ 1.12
UPF3A-206ENST00000480362 NUP98P52948 1817 aa22.05■■□□□ 1.12
UPF3A-206ENST00000480362 GPTP24298 496 aa22.04■■□□□ 1.12
UPF3A-206ENST00000480362 RWDD1Q9H446 243 aaPredicted RBP22.04■■□□□ 1.12
UPF3A-206ENST00000480362 ZPR1O75312 459 aa22.03■■□□□ 1.12
UPF3A-206ENST00000480362 ADRA2BP18089 450 aa22.03■■□□□ 1.12
UPF3A-206ENST00000480362 CLEC4GQ6UXB4 293 aa22.03■■□□□ 1.12
UPF3A-206ENST00000480362 CCDC125Q86Z20 511 aa22.03■■□□□ 1.12
UPF3A-206ENST00000480362 RPAP2Q8IXW5 612 aaPredicted RBP22.03■■□□□ 1.12
UPF3A-206ENST00000480362 ZNF34Q8IZ26 560 aa22.03■■□□□ 1.12
UPF3A-206ENST00000480362 AKT1S1Q96B36 256 aa22.03■■□□□ 1.12
UPF3A-206ENST00000480362 SRP68Q9UHB9 627 aaKnown RBP22.03■■□□□ 1.12
UPF3A-206ENST00000480362 HDAC5Q9UQL6 1122 aa22.03■■□□□ 1.12
UPF3A-206ENST00000480362 ZNF652Q9Y2D9 606 aa22.03■■□□□ 1.12
UPF3A-206ENST00000480362 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.02■■□□□ 1.12
UPF3A-206ENST00000480362 RFC4P35249 363 aa22.02■■□□□ 1.12
UPF3A-206ENST00000480362 USPL1Q5W0Q7 1092 aa22.02■■□□□ 1.12
UPF3A-206ENST00000480362 DEFB132Q7Z7B7 95 aa22.02■■□□□ 1.12
UPF3A-206ENST00000480362 NLRP10Q86W26 655 aa22.02■■□□□ 1.12
UPF3A-206ENST00000480362 ANKRD44Q8N8A2 993 aa22.02■■□□□ 1.12
UPF3A-206ENST00000480362 JARID2Q92833 1246 aaPredicted RBP22.02■■□□□ 1.12
UPF3A-206ENST00000480362 UBR3Q6ZT12 1888 aa22.02■■□□□ 1.12
UPF3A-206ENST00000480362 EP400Q96L91 3159 aa22.01■■□□□ 1.11
UPF3A-206ENST00000480362 H7C1W4 665 aa22.01■■□□□ 1.11
UPF3A-206ENST00000480362 RGL2O15211 777 aa22.01■■□□□ 1.11
UPF3A-206ENST00000480362 SSFA2P28290 1259 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms