RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 KIF6Q6ZMV9 814 aa25.4■■□□□ 1.66
LIME1-205ENST00000480139 NUP98P52948 1817 aa25.4■■□□□ 1.66
LIME1-205ENST00000480139 MAP3K15Q6ZN16 1313 aa25.39■■□□□ 1.66
LIME1-205ENST00000480139 ARXQ96QS3 562 aa25.39■■□□□ 1.66
LIME1-205ENST00000480139 STK31Q9BXU1 1019 aa25.39■■□□□ 1.66
LIME1-205ENST00000480139 ZNF652Q9Y2D9 606 aa25.39■■□□□ 1.66
LIME1-205ENST00000480139 CT47B1P0C2W7 299 aaPredicted RBP25.38■■□□□ 1.65
LIME1-205ENST00000480139 TTLL7Q6ZT98 887 aa25.38■■□□□ 1.65
LIME1-205ENST00000480139 ZNF428Q96B54 188 aa25.38■■□□□ 1.65
LIME1-205ENST00000480139 TM4SF1P30408 202 aa25.37■■□□□ 1.65
LIME1-205ENST00000480139 COPS6Q7L5N1 327 aa25.37■■□□□ 1.65
LIME1-205ENST00000480139 XAGE3Q8WTP9 111 aa25.37■■□□□ 1.65
LIME1-205ENST00000480139 MMP10P09238 476 aa25.36■■□□□ 1.65
LIME1-205ENST00000480139 ANKRD36CQ5JPF3 1778 aa25.36■■□□□ 1.65
LIME1-205ENST00000480139 NRXN2Q9P2S2 1712 aa25.35■■□□□ 1.65
LIME1-205ENST00000480139 ATP10DQ9P241 1426 aa25.35■■□□□ 1.65
LIME1-205ENST00000480139 ARFGEF2Q9Y6D5 1785 aa25.34■■□□□ 1.65
LIME1-205ENST00000480139 NFIXQ14938 502 aa25.34■■□□□ 1.65
LIME1-205ENST00000480139 AIMP1Q12904 312 aaKnown RBP25.33■■□□□ 1.65
LIME1-205ENST00000480139 ZBTB3Q9H5J0 574 aa25.33■■□□□ 1.65
LIME1-205ENST00000480139 AFDNP55196 1824 aaKnown RBP25.33■■□□□ 1.64
LIME1-205ENST00000480139 CARMIL3Q8ND23 1372 aa25.32■■□□□ 1.64
LIME1-205ENST00000480139 POLRMTO00411 1230 aaKnown RBP25.32■■□□□ 1.64
LIME1-205ENST00000480139 SLC4A2P04920 1241 aa25.32■■□□□ 1.64
LIME1-205ENST00000480139 DDR1Q08345 913 aa25.32■■□□□ 1.64
LIME1-205ENST00000480139 HLFQ16534 295 aa25.32■■□□□ 1.64
LIME1-205ENST00000480139 TBC1D9BQ66K14 1250 aa25.32■■□□□ 1.64
LIME1-205ENST00000480139 GIGYF2Q6Y7W6 1299 aaKnown RBP25.32■■□□□ 1.64
LIME1-205ENST00000480139 PLBD2Q8NHP8 589 aa25.32■■□□□ 1.64
LIME1-205ENST00000480139 PHAXQ9H814 394 aaKnown RBP25.32■■□□□ 1.64
LIME1-205ENST00000480139 PARP3Q9Y6F1 533 aa25.32■■□□□ 1.64
LIME1-205ENST00000480139 KIF13BQ9NQT8 1826 aa25.32■■□□□ 1.64
LIME1-205ENST00000480139 ANKRD13DQ6ZTN6 518 aa25.31■■□□□ 1.64
LIME1-205ENST00000480139 PPP1R1BQ9UD71 204 aaPredicted RBP25.31■■□□□ 1.64
LIME1-205ENST00000480139 TCERG1O14776 1098 aaKnown RBP25.3■■□□□ 1.64
LIME1-205ENST00000480139 DDX58O95786 925 aaKnown RBP25.29■■□□□ 1.64
LIME1-205ENST00000480139 ALDH1L2Q3SY69 923 aa25.29■■□□□ 1.64
LIME1-205ENST00000480139 HSP90AB3PQ58FF7 597 aa25.29■■□□□ 1.64
LIME1-205ENST00000480139 SETDB2Q96T68 719 aa25.29■■□□□ 1.64
LIME1-205ENST00000480139 SRCAPQ6ZRS2 3230 aa25.28■■□□□ 1.64
LIME1-205ENST00000480139 C10orf71Q711Q0 1435 aa25.28■■□□□ 1.64
LIME1-205ENST00000480139 FLIIQ13045 1269 aa25.27■■□□□ 1.64
LIME1-205ENST00000480139 BICDL1Q6ZP65 573 aa25.27■■□□□ 1.64
LIME1-205ENST00000480139 ZNF34Q8IZ26 560 aa25.27■■□□□ 1.64
LIME1-205ENST00000480139 NIP7Q9Y221 180 aaKnown RBP eCLIP25.27■■□□□ 1.64
LIME1-205ENST00000480139 G2E3Q7L622 706 aa25.26■■□□□ 1.63
LIME1-205ENST00000480139 SERPINB2P05120 415 aa25.25■■□□□ 1.63
LIME1-205ENST00000480139 CD2APQ9Y5K6 639 aa25.25■■□□□ 1.63
LIME1-205ENST00000480139 IBTKQ9P2D0 1353 aaPredicted RBP25.25■■□□□ 1.63
LIME1-205ENST00000480139 TCIRG1Q13488 830 aa25.24■■□□□ 1.63
LIME1-205ENST00000480139 KSR2Q6VAB6 950 aa25.24■■□□□ 1.63
LIME1-205ENST00000480139 RIC3Q7Z5B4 369 aa25.24■■□□□ 1.63
LIME1-205ENST00000480139 SSH1Q8WYL5 1049 aa25.24■■□□□ 1.63
LIME1-205ENST00000480139 ADCY9O60503 1353 aa25.23■■□□□ 1.63
LIME1-205ENST00000480139 PARP10Q53GL7 1025 aa25.23■■□□□ 1.63
LIME1-205ENST00000480139 MRPL50Q8N5N7 158 aaKnown RBP25.23■■□□□ 1.63
LIME1-205ENST00000480139 FHDC1Q9C0D6 1143 aaPredicted RBP25.23■■□□□ 1.63
LIME1-205ENST00000480139 UBN2Q6ZU65 1347 aa25.22■■□□□ 1.63
LIME1-205ENST00000480139 BRPF1P55201 1214 aaPredicted RBP25.22■■□□□ 1.63
LIME1-205ENST00000480139 KIAA1551Q9HCM1 1747 aa25.21■■□□□ 1.63
LIME1-205ENST00000480139 PI4KAP2A4QPH2 592 aa25.21■■□□□ 1.63
LIME1-205ENST00000480139 FKBP5Q13451 457 aaPredicted RBP25.21■■□□□ 1.63
LIME1-205ENST00000480139 PI4KAP1Q8N8J0 262 aa25.21■■□□□ 1.63
LIME1-205ENST00000480139 GPTP24298 496 aa25.2■■□□□ 1.62
LIME1-205ENST00000480139 RARSP54136 660 aaKnown RBP25.2■■□□□ 1.62
LIME1-205ENST00000480139 TRIM28Q13263 835 aaKnown RBP25.2■■□□□ 1.62
LIME1-205ENST00000480139 PRR5LQ6MZQ0 368 aa25.2■■□□□ 1.62
LIME1-205ENST00000480139 NBPF5PQ86XG9 351 aaPredicted RBP25.2■■□□□ 1.62
LIME1-205ENST00000480139 CNBD1Q8NA66 436 aa25.2■■□□□ 1.62
LIME1-205ENST00000480139 ISCA1Q9BUE6 129 aa25.2■■□□□ 1.62
LIME1-205ENST00000480139 METTL22Q9BUU2 404 aaPredicted RBP25.2■■□□□ 1.62
LIME1-205ENST00000480139 NYXQ9GZU5 481 aa25.2■■□□□ 1.62
LIME1-205ENST00000480139 SMC4Q9NTJ3 1288 aa25.2■■□□□ 1.62
LIME1-205ENST00000480139 MAP3K2Q9Y2U5 619 aa25.2■■□□□ 1.62
LIME1-205ENST00000480139 RNF123Q5XPI4 1314 aa25.19■■□□□ 1.62
LIME1-205ENST00000480139 TPTE2Q6XPS3 522 aa25.19■■□□□ 1.62
LIME1-205ENST00000480139 SYT17Q9BSW7 474 aa25.19■■□□□ 1.62
LIME1-205ENST00000480139 ANKRD31Q8N7Z5 1873 aa25.19■■□□□ 1.62
LIME1-205ENST00000480139 PTPRCP08575 1304 aa25.18■■□□□ 1.62
LIME1-205ENST00000480139 PPP1R42Q7Z4L9 355 aa25.18■■□□□ 1.62
LIME1-205ENST00000480139 NLRP10Q86W26 655 aa25.18■■□□□ 1.62
LIME1-205ENST00000480139 YTHDC1Q96MU7 727 aaKnown RBP25.17■■□□□ 1.62
LIME1-205ENST00000480139 RIC1Q4ADV7 1423 aa25.17■■□□□ 1.62
LIME1-205ENST00000480139 NTSR2O95665 410 aa25.16■■□□□ 1.62
LIME1-205ENST00000480139 TGFB2P61812 414 aa25.16■■□□□ 1.62
LIME1-205ENST00000480139 ST5P78524 1137 aa25.16■■□□□ 1.62
LIME1-205ENST00000480139 SUSD4Q5VX71 490 aa25.16■■□□□ 1.62
LIME1-205ENST00000480139 DNAAF4Q8WXU2 420 aa25.16■■□□□ 1.62
LIME1-205ENST00000480139 BCL2L13Q9BXK5 485 aa25.16■■□□□ 1.62
LIME1-205ENST00000480139 NEXNQ0ZGT2 675 aa25.15■■□□□ 1.62
LIME1-205ENST00000480139 KLHL34Q8N239 644 aa25.15■■□□□ 1.62
LIME1-205ENST00000480139 MYD88Q99836 296 aa25.15■■□□□ 1.62
LIME1-205ENST00000480139 BRIP1Q9BX63 1249 aa25.15■■□□□ 1.62
LIME1-205ENST00000480139 DLEC1Q9Y238 1755 aa25.15■■□□□ 1.62
LIME1-205ENST00000480139 PXDNLA1KZ92 1463 aa25.15■■□□□ 1.62
LIME1-205ENST00000480139 NPHP1O15259 732 aa25.14■■□□□ 1.62
LIME1-205ENST00000480139 CCDC191Q8NCU4 936 aa25.14■■□□□ 1.62
LIME1-205ENST00000480139 UTP14AQ9BVJ6 771 aaKnown RBP25.14■■□□□ 1.62
LIME1-205ENST00000480139 KIF16BQ96L93 1317 aa25.13■■□□□ 1.61
LIME1-205ENST00000480139 N4BP2Q86UW6 1770 aaPredicted RBP25.13■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms