RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 HDAC5Q9UQL6 1122 aa15.91■□□□□ 0.14
SEC13-216ENST00000479868 PCDH11XQ9BZA7 1347 aa15.91■□□□□ 0.14
SEC13-216ENST00000479868 PCDH11YQ9BZA8 1340 aa15.91■□□□□ 0.14
SEC13-216ENST00000479868 NEXNQ0ZGT2 675 aa15.9■□□□□ 0.14
SEC13-216ENST00000479868 ANKRD13DQ6ZTN6 518 aa15.9■□□□□ 0.14
SEC13-216ENST00000479868 MYD88Q99836 296 aa15.9■□□□□ 0.14
SEC13-216ENST00000479868 METTL22Q9BUU2 404 aaPredicted RBP15.9■□□□□ 0.14
SEC13-216ENST00000479868 GCKRQ14397 625 aa15.89■□□□□ 0.13
SEC13-216ENST00000479868 TNPO1Q92973 898 aaKnown RBP15.89■□□□□ 0.13
SEC13-216ENST00000479868 ANO2Q9NQ90 1003 aa15.89■□□□□ 0.13
SEC13-216ENST00000479868 LAMB4A4D0S4 1761 aa15.89■□□□□ 0.13
SEC13-216ENST00000479868 RAB3GAP1Q15042 981 aa15.89■□□□□ 0.13
SEC13-216ENST00000479868 ARXQ96QS3 562 aa15.89■□□□□ 0.13
SEC13-216ENST00000479868 USP42Q9H9J4 1324 aaKnown RBP15.89■□□□□ 0.13
SEC13-216ENST00000479868 CLASRPQ8N2M8 674 aaKnown RBP15.88■□□□□ 0.13
SEC13-216ENST00000479868 SHANK3Q9BYB0 1731 aa15.88■□□□□ 0.13
SEC13-216ENST00000479868 STRN4Q9NRL3 753 aa15.88■□□□□ 0.13
SEC13-216ENST00000479868 ARFGEF2Q9Y6D5 1785 aa15.88■□□□□ 0.13
SEC13-216ENST00000479868 ST18O60284 1047 aa15.87■□□□□ 0.13
SEC13-216ENST00000479868 PALD1Q9ULE6 856 aa15.87■□□□□ 0.13
SEC13-216ENST00000479868 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.87■□□□□ 0.13
SEC13-216ENST00000479868 NHSL1Q5SYE7 1610 aa15.87■□□□□ 0.13
SEC13-216ENST00000479868 IL2RBP14784 551 aa15.87■□□□□ 0.13
SEC13-216ENST00000479868 CARD10Q9BWT7 1032 aa15.87■□□□□ 0.13
SEC13-216ENST00000479868 AFDNP55196 1824 aaKnown RBP15.87■□□□□ 0.13
SEC13-216ENST00000479868 TTC41PQ6P2S7 1318 aa15.86■□□□□ 0.13
SEC13-216ENST00000479868 EPHA10Q5JZY3 1008 aa15.86■□□□□ 0.13
SEC13-216ENST00000479868 ERC1Q8IUD2 1116 aa15.86■□□□□ 0.13
SEC13-216ENST00000479868 UBR2Q8IWV8 1755 aa15.86■□□□□ 0.13
SEC13-216ENST00000479868 SASH1O94885 1247 aa15.86■□□□□ 0.13
SEC13-216ENST00000479868 CNTROBQ8N137 903 aa15.85■□□□□ 0.13
SEC13-216ENST00000479868 DDX54Q8TDD1 881 aaKnown RBP15.85■□□□□ 0.13
SEC13-216ENST00000479868 JARID2Q92833 1246 aaPredicted RBP15.85■□□□□ 0.13
SEC13-216ENST00000479868 ERVV-2B6SEH9 535 aa15.85■□□□□ 0.13
SEC13-216ENST00000479868 GLRX3O76003 335 aaKnown RBP15.85■□□□□ 0.13
SEC13-216ENST00000479868 NKX1-1Q15270 411 aaPredicted RBP15.85■□□□□ 0.13
SEC13-216ENST00000479868 KLHDC4Q8TBB5 520 aa15.85■□□□□ 0.13
SEC13-216ENST00000479868 NBPF26B4DH59 902 aa15.84■□□□□ 0.13
SEC13-216ENST00000479868 MCCP23508 829 aa15.84■□□□□ 0.13
SEC13-216ENST00000479868 NEK4P51957 841 aa15.84■□□□□ 0.13
SEC13-216ENST00000479868 NBPF14Q5TI25 921 aa15.84■□□□□ 0.13
SEC13-216ENST00000479868 NBPF10Q6P3W6 841 aaKnown RBP15.84■□□□□ 0.13
SEC13-216ENST00000479868 AACSQ86V21 672 aa15.84■□□□□ 0.13
SEC13-216ENST00000479868 NBPF15Q8N660 670 aa15.84■□□□□ 0.13
SEC13-216ENST00000479868 SIL1Q9H173 461 aa15.84■□□□□ 0.13
SEC13-216ENST00000479868 ECHDC1Q9NTX5 307 aa15.84■□□□□ 0.13
SEC13-216ENST00000479868 KCPQ6ZWJ8 1503 aa15.84■□□□□ 0.13
SEC13-216ENST00000479868 ATP5J2-PTCD1G3V325 749 aa15.84■□□□□ 0.13
SEC13-216ENST00000479868 PTCD1O75127 700 aaKnown RBP15.84■□□□□ 0.13
SEC13-216ENST00000479868 IFIT2P09913 472 aaKnown RBP15.84■□□□□ 0.13
SEC13-216ENST00000479868 EVA1CP58658 441 aa15.84■□□□□ 0.13
SEC13-216ENST00000479868 G3BP1Q13283 466 aaKnown RBP eCLIP15.84■□□□□ 0.132e-9■■■□□ 17.5
SEC13-216ENST00000479868 PAPPAQ13219 1627 aa15.83■□□□□ 0.13
SEC13-216ENST00000479868 DDX11L8A8MPP1 907 aa15.83■□□□□ 0.12
SEC13-216ENST00000479868 SGSM2O43147 1006 aa15.83■□□□□ 0.12
SEC13-216ENST00000479868 SSFA2P28290 1259 aa15.83■□□□□ 0.12
SEC13-216ENST00000479868 EAF2Q96CJ1 260 aaPredicted RBP15.83■□□□□ 0.12
SEC13-216ENST00000479868 ANAPC15P60006 121 aa15.83■□□□□ 0.12
SEC13-216ENST00000479868 UBE3BQ7Z3V4 1068 aa15.83■□□□□ 0.12
SEC13-216ENST00000479868 PLBD2Q8NHP8 589 aa15.83■□□□□ 0.12
SEC13-216ENST00000479868 TRAK2O60296 914 aa15.82■□□□□ 0.12
SEC13-216ENST00000479868 CWC27Q6UX04 472 aaKnown RBP15.82■□□□□ 0.12
SEC13-216ENST00000479868 ZGPATQ8N5A5 531 aaKnown RBP15.82■□□□□ 0.12
SEC13-216ENST00000479868 TOGARAM1Q9Y4F4 1720 aa15.81■□□□□ 0.12
SEC13-216ENST00000479868 HSPA4P34932 840 aa15.81■□□□□ 0.12
SEC13-216ENST00000479868 IL17RAQ96F46 866 aa15.81■□□□□ 0.12
SEC13-216ENST00000479868 GPATCH3Q96I76 525 aa15.81■□□□□ 0.12
SEC13-216ENST00000479868 GBP4Q96PP9 640 aa15.81■□□□□ 0.12
SEC13-216ENST00000479868 CCDC8Q9H0W5 538 aaPredicted RBP15.81■□□□□ 0.12
SEC13-216ENST00000479868 TLR7Q9NYK1 1049 aaKnown RBP15.81■□□□□ 0.12
SEC13-216ENST00000479868 ERBB4Q15303 1308 aa15.81■□□□□ 0.12
SEC13-216ENST00000479868 A0A087WZG4 1122 aa15.8■□□□□ 0.12
SEC13-216ENST00000479868 EPB41L2O43491 1005 aaKnown RBP15.8■□□□□ 0.12
SEC13-216ENST00000479868 A1BGP04217 495 aa15.8■□□□□ 0.12
SEC13-216ENST00000479868 RAD50Q92878 1312 aa15.8■□□□□ 0.12
SEC13-216ENST00000479868 TTLL7Q6ZT98 887 aa15.8■□□□□ 0.12
SEC13-216ENST00000479868 LSG1Q9H089 658 aaKnown RBP15.8■□□□□ 0.12
SEC13-216ENST00000479868 GZF1Q9H116 711 aaPredicted RBP15.8■□□□□ 0.12
SEC13-216ENST00000479868 NUP188Q5SRE5 1749 aa15.8■□□□□ 0.12
SEC13-216ENST00000479868 RFX5P48382 616 aaPredicted RBP15.79■□□□□ 0.12
SEC13-216ENST00000479868 PKP1Q13835 747 aa15.79■□□□□ 0.12
SEC13-216ENST00000479868 TNS2Q63HR2 1409 aa15.79■□□□□ 0.12
SEC13-216ENST00000479868 CASP7P55210 303 aa15.79■□□□□ 0.12
SEC13-216ENST00000479868 RABL6Q3YEC7 729 aaPredicted RBP15.79■□□□□ 0.12
SEC13-216ENST00000479868 TMX3Q96JJ7 454 aa15.79■□□□□ 0.12
SEC13-216ENST00000479868 UPF3BQ9BZI7 483 aaKnown RBP15.79■□□□□ 0.12
SEC13-216ENST00000479868 COL15A1P39059 1388 aa15.79■□□□□ 0.12
SEC13-216ENST00000479868 PTPN12Q05209 780 aaKnown RBP15.78■□□□□ 0.12
SEC13-216ENST00000479868 COPRSQ9NQ92 184 aa15.78■□□□□ 0.12
SEC13-216ENST00000479868 DIAPH3Q9NSV4 1193 aa15.78■□□□□ 0.12
SEC13-216ENST00000479868 BTG4Q9NY30 223 aa15.78■□□□□ 0.12
SEC13-216ENST00000479868 CYP2E1P05181 493 aaPredicted RBP15.78■□□□□ 0.12
SEC13-216ENST00000479868 CWC22Q9HCG8 908 aaKnown RBP15.78■□□□□ 0.12
SEC13-216ENST00000479868 CLEC17AQ6ZS10 378 aa15.77■□□□□ 0.12
SEC13-216ENST00000479868 EVI5LQ96CN4 794 aa15.77■□□□□ 0.12
SEC13-216ENST00000479868 MCM2P49736 904 aa15.77■□□□□ 0.11
SEC13-216ENST00000479868 NUCB2P80303 420 aa15.77■□□□□ 0.11
SEC13-216ENST00000479868 NOL8Q76FK4 1167 aaKnown RBP15.77■□□□□ 0.11
SEC13-216ENST00000479868 TJP1Q07157 1748 aa15.76■□□□□ 0.11
SEC13-216ENST00000479868 KIAA1211Q6ZU35 1233 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms