RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 SNRPBP14678 240 aaKnown RBP9.01□□□□□ -0.97
USP48-208ENST00000479177 SMCPP49901 116 aaPredicted RBP9.01□□□□□ -0.97
USP48-208ENST00000479177 CNGB1Q14028 1251 aaPredicted RBP9.01□□□□□ -0.97
USP48-208ENST00000479177 CTC1Q2NKJ3 1217 aa9.01□□□□□ -0.97
USP48-208ENST00000479177 MYSM1Q5VVJ2 828 aa9.01□□□□□ -0.97
USP48-208ENST00000479177 OVOS2Q6IE36 1432 aa9.01□□□□□ -0.97
USP48-208ENST00000479177 PMFBP1Q8TBY8 1022 aa9.01□□□□□ -0.97
USP48-208ENST00000479177 MARF1Q9Y4F3 1742 aaKnown RBP9.01□□□□□ -0.97
USP48-208ENST00000479177 PCDHB15Q9Y5E8 787 aa9.01□□□□□ -0.97
USP48-208ENST00000479177 BRD4O60885 1362 aaPredicted RBP9□□□□□ -0.97
USP48-208ENST00000479177 FMNL1O95466 1100 aaPredicted RBP9□□□□□ -0.97
USP48-208ENST00000479177 NGDNQ8NEJ9 315 aaKnown RBP9□□□□□ -0.97
USP48-208ENST00000479177 ORAI2Q96SN7 254 aa9□□□□□ -0.97
USP48-208ENST00000479177 LIMD1Q9UGP4 676 aa9□□□□□ -0.97
USP48-208ENST00000479177 TTC21BQ7Z4L5 1316 aa9□□□□□ -0.97
USP48-208ENST00000479177 NHSL1Q5SYE7 1610 aa8.99□□□□□ -0.97
USP48-208ENST00000479177 FYB1O15117 783 aa8.99□□□□□ -0.97
USP48-208ENST00000479177 CSPP1Q1MSJ5 1256 aa8.99□□□□□ -0.97
USP48-208ENST00000479177 ESCO1Q5FWF5 840 aa8.99□□□□□ -0.97
USP48-208ENST00000479177 RSBN1LQ6PCB5 846 aaPredicted RBP8.99□□□□□ -0.97
USP48-208ENST00000479177 NLRP13Q86W25 1043 aa8.99□□□□□ -0.97
USP48-208ENST00000479177 NME9Q86XW9 330 aa8.99□□□□□ -0.97
USP48-208ENST00000479177 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.99□□□□□ -0.97
USP48-208ENST00000479177 PXDNQ92626 1479 aa8.99□□□□□ -0.97
USP48-208ENST00000479177 ALS2Q96Q42 1657 aa8.99□□□□□ -0.97
USP48-208ENST00000479177 TTC21AQ8NDW8 1320 aa8.99□□□□□ -0.97
USP48-208ENST00000479177 SMPD1P17405 629 aa8.98□□□□□ -0.97
USP48-208ENST00000479177 PPP2R1AP30153 589 aa8.98□□□□□ -0.97
USP48-208ENST00000479177 CCDC184Q52MB2 194 aa8.98□□□□□ -0.97
USP48-208ENST00000479177 MORC1Q86VD1 984 aa8.98□□□□□ -0.97
USP48-208ENST00000479177 GGNBP2Q9H3C7 697 aa8.98□□□□□ -0.97
USP48-208ENST00000479177 POLR3EQ9NVU0 708 aa8.98□□□□□ -0.97
USP48-208ENST00000479177 SALL2Q9Y467 1007 aaPredicted RBP8.98□□□□□ -0.97
USP48-208ENST00000479177 USP31Q70CQ4 1352 aa8.98□□□□□ -0.97
USP48-208ENST00000479177 SMG6Q86US8 1419 aaKnown RBP8.97□□□□□ -0.97
USP48-208ENST00000479177 IQSEC2Q5JU85 1478 aa8.97□□□□□ -0.97
USP48-208ENST00000479177 TTC24A2A3L6 582 aaPredicted RBP8.97□□□□□ -0.97
USP48-208ENST00000479177 Q3C1V9 767 aa8.97□□□□□ -0.97
USP48-208ENST00000479177 RIC3Q7Z5B4 369 aa8.97□□□□□ -0.97
USP48-208ENST00000479177 IL27Q8NEV9 243 aa8.97□□□□□ -0.97
USP48-208ENST00000479177 ATP13A2Q9NQ11 1180 aa8.97□□□□□ -0.97
USP48-208ENST00000479177 C6orf229H3BNL8 230 aa8.96□□□□□ -0.98
USP48-208ENST00000479177 SPTLC1O15269 473 aa8.96□□□□□ -0.98
USP48-208ENST00000479177 INSM1Q01101 510 aaPredicted RBP8.96□□□□□ -0.98
USP48-208ENST00000479177 BRINP3Q76B58 766 aa8.96□□□□□ -0.98
USP48-208ENST00000479177 CABLES1Q8TDN4 633 aa8.96□□□□□ -0.98
USP48-208ENST00000479177 USB1Q9BQ65 265 aaKnown RBP8.96□□□□□ -0.98
USP48-208ENST00000479177 MRS2Q9HD23 443 aa8.96□□□□□ -0.98
USP48-208ENST00000479177 ROBO1Q9Y6N7 1651 aa8.96□□□□□ -0.98
USP48-208ENST00000479177 NPHP3Q7Z494 1330 aa8.96□□□□□ -0.98
USP48-208ENST00000479177 COL3A1P02461 1466 aaPredicted RBP8.96□□□□□ -0.98
USP48-208ENST00000479177 SLIT3O75094 1523 aa8.95□□□□□ -0.98
USP48-208ENST00000479177 MED1Q15648 1581 aaPredicted RBP8.95□□□□□ -0.98
USP48-208ENST00000479177 AHDC1Q5TGY3 1603 aaPredicted RBP8.95□□□□□ -0.98
USP48-208ENST00000479177 SHPRHQ149N8 1683 aa8.95□□□□□ -0.98
USP48-208ENST00000479177 CRYBG1Q9Y4K1 1723 aa8.95□□□□□ -0.98
USP48-208ENST00000479177 TERTO14746 1132 aaKnown RBP8.95□□□□□ -0.98
USP48-208ENST00000479177 FOXO3O43524 673 aa8.95□□□□□ -0.98
USP48-208ENST00000479177 QPCTQ16769 361 aa8.95□□□□□ -0.98
USP48-208ENST00000479177 COG3Q96JB2 828 aa8.95□□□□□ -0.98
USP48-208ENST00000479177 SLAIN2Q9P270 581 aa8.95□□□□□ -0.98
USP48-208ENST00000479177 SBNO1A3KN83 1393 aa8.95□□□□□ -0.98
USP48-208ENST00000479177 AATKQ6ZMQ8 1374 aa8.95□□□□□ -0.98
USP48-208ENST00000479177 TNS3Q68CZ2 1445 aa8.95□□□□□ -0.98
USP48-208ENST00000479177 CDK12Q9NYV4 1490 aaPredicted RBP8.95□□□□□ -0.98
USP48-208ENST00000479177 NFAT5O94916 1531 aa8.95□□□□□ -0.98
USP48-208ENST00000479177 MAP2P11137 1827 aaKnown RBP8.94□□□□□ -0.98
USP48-208ENST00000479177 J3QL48 77 aa8.94□□□□□ -0.98
USP48-208ENST00000479177 TNNT2P45379 298 aaPredicted RBP8.94□□□□□ -0.98
USP48-208ENST00000479177 XPCQ01831 940 aaPredicted RBP8.94□□□□□ -0.98
USP48-208ENST00000479177 PSME1Q06323 249 aa8.94□□□□□ -0.98
USP48-208ENST00000479177 DDRGK1Q96HY6 314 aa8.94□□□□□ -0.98
USP48-208ENST00000479177 PHRF1Q9P1Y6 1649 aaKnown RBP8.94□□□□□ -0.98
USP48-208ENST00000479177 PEAK1Q9H792 1746 aa8.94□□□□□ -0.98
USP48-208ENST00000479177 DIXDC1Q155Q3 683 aa8.93□□□□□ -0.98
USP48-208ENST00000479177 MSS51Q4VC12 460 aa8.93□□□□□ -0.98
USP48-208ENST00000479177 KRT28Q7Z3Y7 464 aa8.93□□□□□ -0.98
USP48-208ENST00000479177 PROCA1Q8NCQ7 364 aaPredicted RBP8.93□□□□□ -0.98
USP48-208ENST00000479177 USP19O94966 1318 aa8.93□□□□□ -0.98
USP48-208ENST00000479177 ABCA3Q99758 1704 aa8.92□□□□□ -0.98
USP48-208ENST00000479177 INSRP06213 1382 aa8.92□□□□□ -0.98
USP48-208ENST00000479177 SOS2Q07890 1332 aaPredicted RBP8.92□□□□□ -0.98
USP48-208ENST00000479177 CLK2P49760 499 aaKnown RBP8.92□□□□□ -0.98
USP48-208ENST00000479177 RETREG3Q86VR2 466 aa8.92□□□□□ -0.98
USP48-208ENST00000479177 DDX17Q92841 729 aaKnown RBP8.92□□□□□ -0.98
USP48-208ENST00000479177 LTN1O94822 1766 aa8.91□□□□□ -0.98
USP48-208ENST00000479177 ARHGEF10O15013 1369 aa8.91□□□□□ -0.98
USP48-208ENST00000479177 PNPLA6Q8IY17 1366 aa8.91□□□□□ -0.98
USP48-208ENST00000479177 WNT7AO00755 349 aa8.91□□□□□ -0.98
USP48-208ENST00000479177 MTHFSP49914 203 aa8.91□□□□□ -0.98
USP48-208ENST00000479177 MTMR2Q13614 643 aa8.91□□□□□ -0.98
USP48-208ENST00000479177 ABTB2Q8N961 1025 aa8.91□□□□□ -0.98
USP48-208ENST00000479177 SNIP1Q8TAD8 396 aaKnown RBP8.91□□□□□ -0.98
USP48-208ENST00000479177 PNISRQ8TF01 805 aaKnown RBP8.91□□□□□ -0.98
USP48-208ENST00000479177 TRIM47Q96LD4 638 aa8.91□□□□□ -0.98
USP48-208ENST00000479177 COL16A1Q07092 1604 aaPredicted RBP8.91□□□□□ -0.98
USP48-208ENST00000479177 BLMP54132 1417 aaPredicted RBP8.9□□□□□ -0.98
USP48-208ENST00000479177 SPATA31A3Q5VYP0 1347 aa8.9□□□□□ -0.98
USP48-208ENST00000479177 CFAP99D6REC4 459 aa8.9□□□□□ -0.98
USP48-208ENST00000479177 DXOO77932 396 aaKnown RBP8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms