RNA–Protein interactions for RNA: ENST00000478169.5

CCM2-210, Transcript of CCM2 scaffold protein, humanhuman

TSL 4

Gene CCM2, Length 542 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-210ENST00000478169 SRGNP10124 158 aa12.96□□□□□ -0.33
CCM2-210ENST00000478169 CLEC4GQ6UXB4 293 aa12.96□□□□□ -0.33
CCM2-210ENST00000478169 TNS4Q8IZW8 715 aa12.96□□□□□ -0.33
CCM2-210ENST00000478169 CCDC24Q8N4L8 307 aa12.96□□□□□ -0.33
CCM2-210ENST00000478169 MASTLQ96GX5 879 aa12.96□□□□□ -0.33
CCM2-210ENST00000478169 ZNF219Q9P2Y4 722 aaPredicted RBP12.96□□□□□ -0.33
CCM2-210ENST00000478169 SCN4AP35499 1836 aa12.96□□□□□ -0.33
CCM2-210ENST00000478169 HSPA1AP0DMV8 641 aaKnown RBP12.95□□□□□ -0.34
CCM2-210ENST00000478169 HSPA1BP0DMV9 641 aaKnown RBP12.95□□□□□ -0.34
CCM2-210ENST00000478169 CHADLQ6NUI6 762 aa12.95□□□□□ -0.34
CCM2-210ENST00000478169 PRPF40BQ6NWY9 871 aaKnown RBP12.95□□□□□ -0.34
CCM2-210ENST00000478169 DZIP3Q86Y13 1208 aaKnown RBP12.95□□□□□ -0.34
CCM2-210ENST00000478169 RGL2O15211 777 aa12.94□□□□□ -0.34
CCM2-210ENST00000478169 PHACTR3Q96KR7 559 aa12.94□□□□□ -0.34
CCM2-210ENST00000478169 CFAP53Q96M91 514 aa12.94□□□□□ -0.34
CCM2-210ENST00000478169 CREBZFQ9NS37 354 aa12.94□□□□□ -0.34
CCM2-210ENST00000478169 USP16Q9Y5T5 823 aa12.94□□□□□ -0.34
CCM2-210ENST00000478169 IQCA1LA6NCM1 817 aa12.93□□□□□ -0.34
CCM2-210ENST00000478169 KCNQ3O43525 872 aa12.93□□□□□ -0.34
CCM2-210ENST00000478169 DDNO94850 711 aaPredicted RBP12.93□□□□□ -0.34
CCM2-210ENST00000478169 PRKAR2BP31323 418 aa12.93□□□□□ -0.34
CCM2-210ENST00000478169 NBPF5PQ86XG9 351 aaPredicted RBP12.93□□□□□ -0.34
CCM2-210ENST00000478169 RSPH6AQ9H0K4 717 aa12.93□□□□□ -0.34
CCM2-210ENST00000478169 ZNF652Q9Y2D9 606 aa12.93□□□□□ -0.34
CCM2-210ENST00000478169 KLRG2A4D1S0 409 aaPredicted RBP12.92□□□□□ -0.34
CCM2-210ENST00000478169 SNRPA1P09661 255 aaKnown RBP12.92□□□□□ -0.34
CCM2-210ENST00000478169 NPR1P16066 1061 aa12.92□□□□□ -0.34
CCM2-210ENST00000478169 C7orf43Q8WVR3 580 aa12.92□□□□□ -0.34
CCM2-210ENST00000478169 NUDCQ9Y266 331 aa12.92□□□□□ -0.34
CCM2-210ENST00000478169 CNGB1Q14028 1251 aaPredicted RBP12.91□□□□□ -0.34
CCM2-210ENST00000478169 CCDC93Q567U6 631 aa12.91□□□□□ -0.34
CCM2-210ENST00000478169 TPTE2Q6XPS3 522 aa12.91□□□□□ -0.34
CCM2-210ENST00000478169 RTF1Q92541 710 aaKnown RBP12.91□□□□□ -0.34
CCM2-210ENST00000478169 L3MBTL3Q96JM7 780 aaPredicted RBP12.91□□□□□ -0.34
CCM2-210ENST00000478169 CAPN15O75808 1086 aa12.9□□□□□ -0.34
CCM2-210ENST00000478169 PRAMEF22A3QJZ6 481 aa12.89□□□□□ -0.35
CCM2-210ENST00000478169 HTATSF1O43719 755 aaKnown RBP12.89□□□□□ -0.35
CCM2-210ENST00000478169 POTEIP0CG38 1075 aa12.89□□□□□ -0.35
CCM2-210ENST00000478169 POTEJP0CG39 1038 aa12.89□□□□□ -0.35
CCM2-210ENST00000478169 PIP4K2AP48426 406 aaPredicted RBP12.89□□□□□ -0.35
CCM2-210ENST00000478169 FKBP4Q02790 459 aaKnown RBP eCLIP12.89□□□□□ -0.35
CCM2-210ENST00000478169 LDHDQ86WU2 507 aa12.89□□□□□ -0.35
CCM2-210ENST00000478169 RTKN2Q8IZC4 609 aa12.89□□□□□ -0.35
CCM2-210ENST00000478169 TAF1DQ9H5J8 278 aaPredicted RBP12.89□□□□□ -0.35
CCM2-210ENST00000478169 PASKQ96RG2 1323 aa12.88□□□□□ -0.35
CCM2-210ENST00000478169 NUP98P52948 1817 aa12.88□□□□□ -0.35
CCM2-210ENST00000478169 NBPF26B4DH59 902 aa12.88□□□□□ -0.35
CCM2-210ENST00000478169 U2AF1L5P0DN76 240 aaPredicted RBP12.88□□□□□ -0.35
CCM2-210ENST00000478169 ALDH1B1P30837 517 aa12.88□□□□□ -0.35
CCM2-210ENST00000478169 U2AF1Q01081 240 aaKnown RBP eCLIP12.88□□□□□ -0.35
CCM2-210ENST00000478169 NBPF10Q6P3W6 841 aaKnown RBP12.88□□□□□ -0.35
CCM2-210ENST00000478169 MCM10Q7L590 875 aa12.88□□□□□ -0.35
CCM2-210ENST00000478169 NBPF15Q8N660 670 aa12.88□□□□□ -0.35
CCM2-210ENST00000478169 MKRN1Q9UHC7 482 aaKnown RBP12.88□□□□□ -0.35
CCM2-210ENST00000478169 NIP7Q9Y221 180 aaKnown RBP eCLIP12.88□□□□□ -0.35
CCM2-210ENST00000478169 LAMB4A4D0S4 1761 aa12.87□□□□□ -0.35
CCM2-210ENST00000478169 CNTNAP1P78357 1384 aa12.87□□□□□ -0.35
CCM2-210ENST00000478169 DLG5Q8TDM6 1919 aa12.86□□□□□ -0.35
CCM2-210ENST00000478169 ITGBL1O95965 494 aaPredicted RBP12.86□□□□□ -0.35
CCM2-210ENST00000478169 TAF7Q15545 349 aaPredicted RBP12.86□□□□□ -0.35
CCM2-210ENST00000478169 ZNF277Q9NRM2 450 aaPredicted RBP12.86□□□□□ -0.35
CCM2-210ENST00000478169 HACL1Q9UJ83 578 aa12.86□□□□□ -0.35
CCM2-210ENST00000478169 ADAMTSL1Q8N6G6 1762 aa12.86□□□□□ -0.35
CCM2-210ENST00000478169 TMEM88BA6NKF7 163 aa12.85□□□□□ -0.35
CCM2-210ENST00000478169 FZD9O00144 591 aa12.85□□□□□ -0.35
CCM2-210ENST00000478169 GTF2E1P29083 439 aaPredicted RBP12.85□□□□□ -0.35
CCM2-210ENST00000478169 PPP2R1AP30153 589 aa12.85□□□□□ -0.35
CCM2-210ENST00000478169 PNMA8AQ86V59 439 aaPredicted RBP12.85□□□□□ -0.35
CCM2-210ENST00000478169 ZNF541Q9H0D2 1346 aa12.85□□□□□ -0.35
CCM2-210ENST00000478169 ERVV-1B6SEH8 477 aa12.84□□□□□ -0.35
CCM2-210ENST00000478169 EPHX2P34913 555 aa12.84□□□□□ -0.35
CCM2-210ENST00000478169 IARSP41252 1262 aaKnown RBP12.84□□□□□ -0.35
CCM2-210ENST00000478169 DCTN1Q14203 1278 aa12.84□□□□□ -0.35
CCM2-210ENST00000478169 HLFQ16534 295 aa12.84□□□□□ -0.35
CCM2-210ENST00000478169 CRY2Q49AN0 593 aa12.84□□□□□ -0.35
CCM2-210ENST00000478169 EAPPQ56P03 285 aaPredicted RBP12.84□□□□□ -0.35
CCM2-210ENST00000478169 CC2D2BQ6DHV5 1058 aa12.84□□□□□ -0.35
CCM2-210ENST00000478169 SYNE4Q8N205 404 aa12.84□□□□□ -0.35
CCM2-210ENST00000478169 PSMD1Q99460 953 aa12.84□□□□□ -0.35
CCM2-210ENST00000478169 NYXQ9GZU5 481 aa12.84□□□□□ -0.35
CCM2-210ENST00000478169 PRDM10Q9NQV6 1147 aa12.84□□□□□ -0.35
CCM2-210ENST00000478169 FAM177BA6PVY3 158 aa12.83□□□□□ -0.36
CCM2-210ENST00000478169 GRIPAP1Q4V328 841 aa12.83□□□□□ -0.36
CCM2-210ENST00000478169 OLFM4Q6UX06 510 aa12.83□□□□□ -0.36
CCM2-210ENST00000478169 GPC2Q8N158 579 aa12.83□□□□□ -0.36
CCM2-210ENST00000478169 PNISRQ8TF01 805 aaKnown RBP12.83□□□□□ -0.36
CCM2-210ENST00000478169 CLEC11AQ9Y240 323 aa12.83□□□□□ -0.36
CCM2-210ENST00000478169 KDM3BQ7LBC6 1761 aa12.83□□□□□ -0.36
CCM2-210ENST00000478169 FOXN1O15353 648 aa12.82□□□□□ -0.36
CCM2-210ENST00000478169 NEFMP07197 916 aa12.82□□□□□ -0.36
CCM2-210ENST00000478169 VEGFBP49765 207 aa12.82□□□□□ -0.36
CCM2-210ENST00000478169 JDP2Q8WYK2 163 aa12.82□□□□□ -0.36
CCM2-210ENST00000478169 AIDAQ96BJ3 306 aa12.82□□□□□ -0.36
CCM2-210ENST00000478169 RIC1Q4ADV7 1423 aa12.81□□□□□ -0.36
CCM2-210ENST00000478169 SNED1Q8TER0 1413 aa12.81□□□□□ -0.36
CCM2-210ENST00000478169 HOXA10P31260 410 aaPredicted RBP12.81□□□□□ -0.36
CCM2-210ENST00000478169 CTCFP49711 727 aaPredicted RBP12.81□□□□□ -0.36
CCM2-210ENST00000478169 CNTROBQ8N137 903 aa12.81□□□□□ -0.36
CCM2-210ENST00000478169 MIS18AQ9NYP9 233 aa12.81□□□□□ -0.36
CCM2-210ENST00000478169 RNF123Q5XPI4 1314 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms