RNA–Protein interactions for RNA: ENST00000477819.1

PTPRN-214, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 4

Gene PTPRN, Length 579 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-214ENST00000477819 TERF2IPQ9NYB0 399 aa10.69□□□□□ -0.7
PTPRN-214ENST00000477819 CCDC88AQ3V6T2 1871 aa10.68□□□□□ -0.7
PTPRN-214ENST00000477819 ROCK2O75116 1388 aaKnown RBP10.68□□□□□ -0.7
PTPRN-214ENST00000477819 DDR1Q08345 913 aa10.68□□□□□ -0.7
PTPRN-214ENST00000477819 ATG3Q9NT62 314 aa10.68□□□□□ -0.7
PTPRN-214ENST00000477819 TMOD3Q9NYL9 352 aa10.68□□□□□ -0.7
PTPRN-214ENST00000477819 TNRC18O15417 2968 aaPredicted RBP10.67□□□□□ -0.7
PTPRN-214ENST00000477819 LMNB1P20700 586 aa10.67□□□□□ -0.7
PTPRN-214ENST00000477819 RFC4P35249 363 aa10.67□□□□□ -0.7
PTPRN-214ENST00000477819 MLLT1Q03111 559 aaPredicted RBP10.67□□□□□ -0.7
PTPRN-214ENST00000477819 NKX1-1Q15270 411 aaPredicted RBP10.67□□□□□ -0.7
PTPRN-214ENST00000477819 VARS2Q5ST30 1063 aaKnown RBP10.67□□□□□ -0.7
PTPRN-214ENST00000477819 GPR153Q6NV75 609 aa10.67□□□□□ -0.7
PTPRN-214ENST00000477819 AIDAQ96BJ3 306 aa10.67□□□□□ -0.7
PTPRN-214ENST00000477819 ZSWIM6Q9HCJ5 1215 aa10.67□□□□□ -0.7
PTPRN-214ENST00000477819 SRP68Q9UHB9 627 aaKnown RBP10.67□□□□□ -0.7
PTPRN-214ENST00000477819 KDM6AO15550 1401 aaPredicted RBP10.67□□□□□ -0.7
PTPRN-214ENST00000477819 CNTNAP1P78357 1384 aa10.66□□□□□ -0.7
PTPRN-214ENST00000477819 CCDC85CA6NKD9 419 aa10.66□□□□□ -0.7
PTPRN-214ENST00000477819 VEGFBP49765 207 aa10.66□□□□□ -0.7
PTPRN-214ENST00000477819 ARSIQ5FYB1 569 aa10.66□□□□□ -0.7
PTPRN-214ENST00000477819 KHSRPQ92945 711 aaKnown RBP eCLIP10.66□□□□□ -0.7
PTPRN-214ENST00000477819 MYH14Q7Z406 1995 aaKnown RBP10.66□□□□□ -0.7
PTPRN-214ENST00000477819 RTL1A6NKG5 1358 aa10.65□□□□□ -0.7
PTPRN-214ENST00000477819 ZC3H4Q9UPT8 1303 aaKnown RBP10.65□□□□□ -0.7
PTPRN-214ENST00000477819 MMRN1Q13201 1228 aa10.65□□□□□ -0.7
PTPRN-214ENST00000477819 WBP1LQ9NX94 342 aa10.65□□□□□ -0.7
PTPRN-214ENST00000477819 SMG6Q86US8 1419 aaKnown RBP10.65□□□□□ -0.7
PTPRN-214ENST00000477819 TIAM2Q8IVF5 1701 aa10.64□□□□□ -0.71
PTPRN-214ENST00000477819 RPS6KA4O75676 772 aa10.64□□□□□ -0.71
PTPRN-214ENST00000477819 HSPA8P11142 646 aaKnown RBP10.64□□□□□ -0.71
PTPRN-214ENST00000477819 KDRP35968 1356 aa10.64□□□□□ -0.71
PTPRN-214ENST00000477819 RC3H1Q5TC82 1133 aaKnown RBP10.63□□□□□ -0.71
PTPRN-214ENST00000477819 TMC2Q8TDI7 906 aa10.63□□□□□ -0.71
PTPRN-214ENST00000477819 GGNBP2Q9H3C7 697 aa10.63□□□□□ -0.71
PTPRN-214ENST00000477819 INSRP06213 1382 aa10.63□□□□□ -0.71
PTPRN-214ENST00000477819 NFKBIEO00221 500 aa10.62□□□□□ -0.71
PTPRN-214ENST00000477819 POLRMTO00411 1230 aaKnown RBP10.62□□□□□ -0.71
PTPRN-214ENST00000477819 RGS19P49795 217 aa10.62□□□□□ -0.71
PTPRN-214ENST00000477819 SPG7Q9UQ90 795 aa10.62□□□□□ -0.71
PTPRN-214ENST00000477819 VIRMAQ69YN4 1812 aaKnown RBP10.62□□□□□ -0.71
PTPRN-214ENST00000477819 COL5A3P25940 1745 aaPredicted RBP10.61□□□□□ -0.71
PTPRN-214ENST00000477819 CNTNAP4Q9C0A0 1308 aa10.61□□□□□ -0.71
PTPRN-214ENST00000477819 PASKQ96RG2 1323 aa10.6□□□□□ -0.71
PTPRN-214ENST00000477819 USP42Q9H9J4 1324 aaKnown RBP10.6□□□□□ -0.71
PTPRN-214ENST00000477819 FYB1O15117 783 aa10.6□□□□□ -0.71
PTPRN-214ENST00000477819 PHKG2P15735 406 aa10.6□□□□□ -0.71
PTPRN-214ENST00000477819 TM4SF1P30408 202 aa10.6□□□□□ -0.71
PTPRN-214ENST00000477819 SIN3AQ96ST3 1273 aa10.6□□□□□ -0.71
PTPRN-214ENST00000477819 DDNO94850 711 aaPredicted RBP10.59□□□□□ -0.71
PTPRN-214ENST00000477819 IFNL2Q8IZJ0 200 aa10.59□□□□□ -0.71
PTPRN-214ENST00000477819 TTLL6Q8N841 843 aa10.59□□□□□ -0.71
PTPRN-214ENST00000477819 CFAP44Q96MT7 982 aa10.59□□□□□ -0.71
PTPRN-214ENST00000477819 FLT4P35916 1363 aa10.58□□□□□ -0.72
PTPRN-214ENST00000477819 TMEM88BA6NKF7 163 aa10.58□□□□□ -0.72
PTPRN-214ENST00000477819 CRKLP46109 303 aaKnown RBP10.58□□□□□ -0.72
PTPRN-214ENST00000477819 ERFEQ4G0M1 354 aa10.58□□□□□ -0.72
PTPRN-214ENST00000477819 CARD11Q9BXL7 1154 aa10.58□□□□□ -0.72
PTPRN-214ENST00000477819 EMILIN1Q9Y6C2 1016 aa10.58□□□□□ -0.72
PTPRN-214ENST00000477819 AFDNP55196 1824 aaKnown RBP10.58□□□□□ -0.72
PTPRN-214ENST00000477819 PPM1GO15355 546 aaPredicted RBP10.57□□□□□ -0.72
PTPRN-214ENST00000477819 PTCD1O75127 700 aaKnown RBP10.57□□□□□ -0.72
PTPRN-214ENST00000477819 ITGBL1O95965 494 aaPredicted RBP10.57□□□□□ -0.72
PTPRN-214ENST00000477819 NEUROD1Q13562 356 aa10.57□□□□□ -0.72
PTPRN-214ENST00000477819 USPL1Q5W0Q7 1092 aa10.57□□□□□ -0.72
PTPRN-214ENST00000477819 C2CD5Q86YS7 1000 aa10.57□□□□□ -0.72
PTPRN-214ENST00000477819 EYA1Q99502 592 aa10.57□□□□□ -0.72
PTPRN-214ENST00000477819 ZNF831Q5JPB2 1677 aa10.57□□□□□ -0.72
PTPRN-214ENST00000477819 DICER1Q9UPY3 1922 aaKnown RBP10.56□□□□□ -0.72
PTPRN-214ENST00000477819 NUDT7P0C024 238 aa10.56□□□□□ -0.72
PTPRN-214ENST00000477819 NCAPD2Q15021 1401 aa10.56□□□□□ -0.72
PTPRN-214ENST00000477819 DLEC1Q9Y238 1755 aa10.55□□□□□ -0.72
PTPRN-214ENST00000477819 C21orf2O43822 256 aa10.55□□□□□ -0.72
PTPRN-214ENST00000477819 NFIXQ14938 502 aa10.55□□□□□ -0.72
PTPRN-214ENST00000477819 DEFB115Q30KQ5 88 aa10.55□□□□□ -0.72
PTPRN-214ENST00000477819 INTS5Q6P9B9 1019 aaKnown RBP10.55□□□□□ -0.72
PTPRN-214ENST00000477819 LDHDQ86WU2 507 aa10.55□□□□□ -0.72
PTPRN-214ENST00000477819 PUS7Q96PZ0 661 aaKnown RBP10.55□□□□□ -0.72
PTPRN-214ENST00000477819 TSKSQ9UJT2 592 aa10.55□□□□□ -0.72
PTPRN-214ENST00000477819 WDR33Q9C0J8 1336 aaKnown RBP10.55□□□□□ -0.72
PTPRN-214ENST00000477819 CARMIL3Q8ND23 1372 aa10.54□□□□□ -0.72
PTPRN-214ENST00000477819 TONSLQ96HA7 1378 aa10.54□□□□□ -0.72
PTPRN-214ENST00000477819 ADAMTS7Q9UKP4 1686 aa10.54□□□□□ -0.72
PTPRN-214ENST00000477819 ZNF316A6NFI3 1004 aaPredicted RBP10.54□□□□□ -0.72
PTPRN-214ENST00000477819 RASSF10A6NK89 507 aa10.54□□□□□ -0.72
PTPRN-214ENST00000477819 ERVV-2B6SEH9 535 aa10.54□□□□□ -0.72
PTPRN-214ENST00000477819 ZPR1O75312 459 aa10.54□□□□□ -0.72
PTPRN-214ENST00000477819 MAP2K1Q02750 393 aaPredicted RBP10.54□□□□□ -0.72
PTPRN-214ENST00000477819 EAPPQ56P03 285 aaPredicted RBP10.54□□□□□ -0.72
PTPRN-214ENST00000477819 ZNF687Q8N1G0 1237 aa10.54□□□□□ -0.72
PTPRN-214ENST00000477819 TAF1DQ9H5J8 278 aaPredicted RBP10.54□□□□□ -0.72
PTPRN-214ENST00000477819 PCDHGA4Q9Y5G9 962 aa10.54□□□□□ -0.72
PTPRN-214ENST00000477819 H0YIN7 160 aa10.53□□□□□ -0.72
PTPRN-214ENST00000477819 SERPINB2P05120 415 aa10.53□□□□□ -0.72
PTPRN-214ENST00000477819 CABP4P57796 275 aa10.53□□□□□ -0.72
PTPRN-214ENST00000477819 ZNF622Q969S3 477 aaKnown RBP eCLIP10.53□□□□□ -0.72
PTPRN-214ENST00000477819 CASP8AP2Q9UKL3 1982 aa10.53□□□□□ -0.72
PTPRN-214ENST00000477819 FER1L6Q2WGJ9 1857 aa10.53□□□□□ -0.72
PTPRN-214ENST00000477819 KIF24Q5T7B8 1368 aa10.52□□□□□ -0.72
PTPRN-214ENST00000477819 GRM1Q13255 1194 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms