RNA–Protein interactions for RNA: ENST00000477552.1

PTPRD-209, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 4

Gene PTPRD, Length 551 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-209ENST00000477552 HMG20BQ9P0W2 317 aa10.09□□□□□ -0.79
PTPRD-209ENST00000477552 LIMCH1Q9UPQ0 1083 aa10.09□□□□□ -0.79
PTPRD-209ENST00000477552 ADCY9O60503 1353 aa10.09□□□□□ -0.79
PTPRD-209ENST00000477552 MRC1P22897 1456 aa10.09□□□□□ -0.79
PTPRD-209ENST00000477552 C1orf167Q5SNV9 1468 aa10.09□□□□□ -0.79
PTPRD-209ENST00000477552 ESPNB1AK53 854 aa10.08□□□□□ -0.8
PTPRD-209ENST00000477552 GRM8O00222 908 aa10.08□□□□□ -0.8
PTPRD-209ENST00000477552 KRT32Q14532 448 aa10.08□□□□□ -0.8
PTPRD-209ENST00000477552 VPS53Q5VIR6 699 aa10.08□□□□□ -0.8
PTPRD-209ENST00000477552 NUTM2GQ5VZR2 741 aa10.08□□□□□ -0.8
PTPRD-209ENST00000477552 TMEM87AQ8NBN3 555 aa10.08□□□□□ -0.8
PTPRD-209ENST00000477552 PI4K2BQ8TCG2 481 aa10.08□□□□□ -0.8
PTPRD-209ENST00000477552 PHAXQ9H814 394 aaKnown RBP10.08□□□□□ -0.8
PTPRD-209ENST00000477552 SNRKQ9NRH2 765 aa10.08□□□□□ -0.8
PTPRD-209ENST00000477552 ERBB3P21860 1342 aa10.07□□□□□ -0.8
PTPRD-209ENST00000477552 NPHP3Q7Z494 1330 aa10.07□□□□□ -0.8
PTPRD-209ENST00000477552 PKD1L3Q7Z443 1732 aa10.07□□□□□ -0.8
PTPRD-209ENST00000477552 LAMB4A4D0S4 1761 aa10.07□□□□□ -0.8
PTPRD-209ENST00000477552 ATF3P18847 181 aa10.07□□□□□ -0.8
PTPRD-209ENST00000477552 TERF1P54274 439 aa10.07□□□□□ -0.8
PTPRD-209ENST00000477552 UVSSAQ2YD98 709 aa10.07□□□□□ -0.8
PTPRD-209ENST00000477552 LRSAM1Q6UWE0 723 aa10.07□□□□□ -0.8
PTPRD-209ENST00000477552 CADPS2Q86UW7 1296 aa10.07□□□□□ -0.8
PTPRD-209ENST00000477552 PROSER2Q86WR7 435 aaPredicted RBP10.07□□□□□ -0.8
PTPRD-209ENST00000477552 IFNL2Q8IZJ0 200 aa10.07□□□□□ -0.8
PTPRD-209ENST00000477552 DCAF5Q96JK2 942 aa10.07□□□□□ -0.8
PTPRD-209ENST00000477552 LGR6Q9HBX8 967 aa10.07□□□□□ -0.8
PTPRD-209ENST00000477552 MAP3K2Q9Y2U5 619 aa10.07□□□□□ -0.8
PTPRD-209ENST00000477552 CPDO75976 1380 aa10.06□□□□□ -0.8
PTPRD-209ENST00000477552 LRRFIP1Q32MZ4 808 aaKnown RBP10.06□□□□□ -0.8
PTPRD-209ENST00000477552 ZSCAN23Q3MJ62 389 aa10.06□□□□□ -0.8
PTPRD-209ENST00000477552 SLC52A2Q9HAB3 445 aa10.06□□□□□ -0.8
PTPRD-209ENST00000477552 CYP46A1Q9Y6A2 500 aa10.06□□□□□ -0.8
PTPRD-209ENST00000477552 PRPF40AO75400 957 aaKnown RBP10.05□□□□□ -0.8
PTPRD-209ENST00000477552 SNRPA1P09661 255 aaKnown RBP10.05□□□□□ -0.8
PTPRD-209ENST00000477552 NBPF7P0C2Y1 421 aaPredicted RBP10.05□□□□□ -0.8
PTPRD-209ENST00000477552 TRHP20396 242 aaPredicted RBP10.05□□□□□ -0.8
PTPRD-209ENST00000477552 MSNP26038 577 aaKnown RBP10.05□□□□□ -0.8
PTPRD-209ENST00000477552 TSGA10IPQ3SY00 556 aa10.05□□□□□ -0.8
PTPRD-209ENST00000477552 ZNF790Q6PG37 636 aa10.05□□□□□ -0.8
PTPRD-209ENST00000477552 ZSCAN30Q86W11 494 aa10.05□□□□□ -0.8
PTPRD-209ENST00000477552 TTC5Q8N0Z6 440 aa10.05□□□□□ -0.8
PTPRD-209ENST00000477552 NECTIN2Q92692 538 aa10.05□□□□□ -0.8
PTPRD-209ENST00000477552 LSG1Q9H089 658 aaKnown RBP10.05□□□□□ -0.8
PTPRD-209ENST00000477552 FOXD4L1Q9NU39 408 aa10.05□□□□□ -0.8
PTPRD-209ENST00000477552 SPEF2Q9C093 1822 aa10.05□□□□□ -0.8
PTPRD-209ENST00000477552 CAVIN1Q6NZI2 390 aaKnown RBP10.04□□□□□ -0.8
PTPRD-209ENST00000477552 MPRIPQ6WCQ1 1025 aa10.04□□□□□ -0.8
PTPRD-209ENST00000477552 RIC3Q7Z5B4 369 aa10.04□□□□□ -0.8
PTPRD-209ENST00000477552 USHBP1Q8N6Y0 703 aa10.04□□□□□ -0.8
PTPRD-209ENST00000477552 TTC14Q96N46 770 aa10.04□□□□□ -0.8
PTPRD-209ENST00000477552 FMNL2Q96PY5 1086 aa10.04□□□□□ -0.8
PTPRD-209ENST00000477552 METTL22Q9BUU2 404 aaPredicted RBP10.04□□□□□ -0.8
PTPRD-209ENST00000477552 IL1RAPL2Q9NP60 686 aa10.04□□□□□ -0.8
PTPRD-209ENST00000477552 COPRSQ9NQ92 184 aa10.04□□□□□ -0.8
PTPRD-209ENST00000477552 SMC3Q9UQE7 1217 aa10.04□□□□□ -0.8
PTPRD-209ENST00000477552 KIF3AQ9Y496 699 aa10.04□□□□□ -0.8
PTPRD-209ENST00000477552 SNX14Q9Y5W7 946 aa10.04□□□□□ -0.8
PTPRD-209ENST00000477552 CCDC171Q6TFL3 1326 aa10.04□□□□□ -0.8
PTPRD-209ENST00000477552 COL18A1P39060 1754 aa10.03□□□□□ -0.8
PTPRD-209ENST00000477552 RGPD5Q99666 1765 aa10.03□□□□□ -0.8
PTPRD-209ENST00000477552 HMGB1P09429 215 aaKnown RBP10.03□□□□□ -0.8
PTPRD-209ENST00000477552 UBE2HP62256 183 aa10.03□□□□□ -0.8
PTPRD-209ENST00000477552 TNS3Q68CZ2 1445 aa10.03□□□□□ -0.8
PTPRD-209ENST00000477552 NUTM1Q86Y26 1132 aa10.03□□□□□ -0.8
PTPRD-209ENST00000477552 ZGPATQ8N5A5 531 aaKnown RBP10.03□□□□□ -0.8
PTPRD-209ENST00000477552 PDLIM2Q96JY6 352 aa10.03□□□□□ -0.8
PTPRD-209ENST00000477552 ZSWIM6Q9HCJ5 1215 aa10.03□□□□□ -0.8
PTPRD-209ENST00000477552 GPR108Q9NPR9 543 aa10.03□□□□□ -0.8
PTPRD-209ENST00000477552 CCDC39Q9UFE4 941 aa10.03□□□□□ -0.8
PTPRD-209ENST00000477552 FBXO3Q9UK99 471 aa10.03□□□□□ -0.8
PTPRD-209ENST00000477552 AFDNP55196 1824 aaKnown RBP10.03□□□□□ -0.8
PTPRD-209ENST00000477552 STX6O43752 255 aa10.02□□□□□ -0.81
PTPRD-209ENST00000477552 TPM3P06753 285 aa10.02□□□□□ -0.81
PTPRD-209ENST00000477552 ZSCAN22P10073 491 aaPredicted RBP10.02□□□□□ -0.81
PTPRD-209ENST00000477552 PHKG2P15735 406 aa10.02□□□□□ -0.81
PTPRD-209ENST00000477552 KCNJ4P48050 445 aa10.02□□□□□ -0.81
PTPRD-209ENST00000477552 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.02□□□□□ -0.81
PTPRD-209ENST00000477552 ANKRD13DQ6ZTN6 518 aa10.02□□□□□ -0.81
PTPRD-209ENST00000477552 RUFY3Q7L099 469 aa10.02□□□□□ -0.81
PTPRD-209ENST00000477552 AACSQ86V21 672 aa10.02□□□□□ -0.81
PTPRD-209ENST00000477552 MAP4K1Q92918 833 aa10.02□□□□□ -0.81
PTPRD-209ENST00000477552 TSPY26PQ9H489 355 aa10.02□□□□□ -0.81
PTPRD-209ENST00000477552 ATG3Q9NT62 314 aa10.02□□□□□ -0.81
PTPRD-209ENST00000477552 ZDHHC9Q9Y397 364 aa10.02□□□□□ -0.81
PTPRD-209ENST00000477552 TMEM94Q12767 1356 aa10.01□□□□□ -0.81
PTPRD-209ENST00000477552 CAVIN2O95810 425 aa10.01□□□□□ -0.81
PTPRD-209ENST00000477552 TPM2P07951 284 aa10.01□□□□□ -0.81
PTPRD-209ENST00000477552 ATP5JP18859 108 aa10.01□□□□□ -0.81
PTPRD-209ENST00000477552 GCKRQ14397 625 aa10.01□□□□□ -0.81
PTPRD-209ENST00000477552 RABL6Q3YEC7 729 aaPredicted RBP10.01□□□□□ -0.81
PTPRD-209ENST00000477552 CCDC183Q5T5S1 534 aa10.01□□□□□ -0.81
PTPRD-209ENST00000477552 CWC27Q6UX04 472 aaKnown RBP10.01□□□□□ -0.81
PTPRD-209ENST00000477552 GAS2L3Q86XJ1 694 aa10.01□□□□□ -0.81
PTPRD-209ENST00000477552 RGS22Q8NE09 1264 aa10.01□□□□□ -0.81
PTPRD-209ENST00000477552 PANK2Q9BZ23 570 aa10.01□□□□□ -0.81
PTPRD-209ENST00000477552 RTN4Q9NQC3 1192 aaKnown RBP10.01□□□□□ -0.81
PTPRD-209ENST00000477552 PDRG1Q9NUG6 133 aa10.01□□□□□ -0.81
PTPRD-209ENST00000477552 PXDNQ92626 1479 aa10.01□□□□□ -0.81
PTPRD-209ENST00000477552 JCADQ9P266 1359 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms