RNA–Protein interactions for RNA: ENST00000477421.2

COL27A1-204, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 2

Gene COL27A1, Length 3,991 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-204ENST00000477421 CCDC39Q9UFE4 941 aa13.09□□□□□ -0.31
COL27A1-204ENST00000477421 USP25Q9UHP3 1055 aa13.09□□□□□ -0.31
COL27A1-204ENST00000477421 MADDQ8WXG6 1647 aa13.09□□□□□ -0.31
COL27A1-204ENST00000477421 PES1O00541 588 aaKnown RBP13.09□□□□□ -0.31
COL27A1-204ENST00000477421 STX6O43752 255 aa13.09□□□□□ -0.31
COL27A1-204ENST00000477421 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.09□□□□□ -0.31
COL27A1-204ENST00000477421 RTL1A6NKG5 1358 aa13.08□□□□□ -0.31
COL27A1-204ENST00000477421 SNRPA1P09661 255 aaKnown RBP13.08□□□□□ -0.31
COL27A1-204ENST00000477421 ANKRD1Q15327 319 aa13.08□□□□□ -0.32
COL27A1-204ENST00000477421 LINS1Q8NG48 757 aa13.08□□□□□ -0.32
COL27A1-204ENST00000477421 RNF17Q9BXT8 1623 aaKnown RBP13.08□□□□□ -0.32
COL27A1-204ENST00000477421 RNMTO43148 476 aaKnown RBP13.08□□□□□ -0.32
COL27A1-204ENST00000477421 KINO60870 393 aaKnown RBP13.08□□□□□ -0.32
COL27A1-204ENST00000477421 PRIM1P49642 420 aaKnown RBP13.08□□□□□ -0.32
COL27A1-204ENST00000477421 SAMD1Q6SPF0 538 aaPredicted RBP13.08□□□□□ -0.32
COL27A1-204ENST00000477421 ZSCAN31Q96LW9 406 aaPredicted RBP13.08□□□□□ -0.32
COL27A1-204ENST00000477421 TBC1D2BQ9UPU7 963 aa13.08□□□□□ -0.32
COL27A1-204ENST00000477421 RBM8AQ9Y5S9 174 aaKnown RBP13.08□□□□□ -0.32
COL27A1-204ENST00000477421 METTL24Q5JXM2 366 aa13.07□□□□□ -0.32
COL27A1-204ENST00000477421 BICDL1Q6ZP65 573 aa13.07□□□□□ -0.32
COL27A1-204ENST00000477421 CCDC82Q8N4S0 544 aa13.07□□□□□ -0.32
COL27A1-204ENST00000477421 BICC1Q9H694 974 aaKnown RBP13.07□□□□□ -0.32
COL27A1-204ENST00000477421 TMOD3Q9NYL9 352 aa13.07□□□□□ -0.32
COL27A1-204ENST00000477421 CNPY2Q9Y2B0 182 aa13.07□□□□□ -0.32
COL27A1-204ENST00000477421 ADAMTS2O95450 1211 aa13.07□□□□□ -0.32
COL27A1-204ENST00000477421 ZNF853P0CG23 659 aa13.07□□□□□ -0.32
COL27A1-204ENST00000477421 STK38Q15208 465 aa13.07□□□□□ -0.32
COL27A1-204ENST00000477421 MPHOSPH8Q99549 860 aa13.07□□□□□ -0.32
COL27A1-204ENST00000477421 CCDC192P0DO97 292 aa13.06□□□□□ -0.32
COL27A1-204ENST00000477421 AK2P54819 239 aa13.06□□□□□ -0.32
COL27A1-204ENST00000477421 PALD1Q9ULE6 856 aa13.06□□□□□ -0.32
COL27A1-204ENST00000477421 HCLS1P14317 486 aaPredicted RBP13.06□□□□□ -0.32
COL27A1-204ENST00000477421 ZSCAN30Q86W11 494 aa13.06□□□□□ -0.32
COL27A1-204ENST00000477421 TSPOAP1O95153 1857 aa13.06□□□□□ -0.32
COL27A1-204ENST00000477421 RAD21O60216 631 aa13.05□□□□□ -0.32
COL27A1-204ENST00000477421 GIMAP6Q6P9H5 292 aa13.05□□□□□ -0.32
COL27A1-204ENST00000477421 EDC3Q96F86 508 aaKnown RBP13.05□□□□□ -0.32
COL27A1-204ENST00000477421 ERICH2A1L162 156 aa13.05□□□□□ -0.32
COL27A1-204ENST00000477421 NMIQ13287 307 aaPredicted RBP13.05□□□□□ -0.32
COL27A1-204ENST00000477421 UNC5CLQ8IV45 518 aa13.05□□□□□ -0.32
COL27A1-204ENST00000477421 NUP62CLQ9H1M0 184 aa13.05□□□□□ -0.32
COL27A1-204ENST00000477421 SPHKAPQ2M3C7 1700 aa13.05□□□□□ -0.32
COL27A1-204ENST00000477421 PRAMEF22A3QJZ6 481 aa13.05□□□□□ -0.32
COL27A1-204ENST00000477421 EIF4A1P60842 406 aaKnown RBP13.05□□□□□ -0.32
COL27A1-204ENST00000477421 BRF1Q92994 677 aa13.05□□□□□ -0.32
COL27A1-204ENST00000477421 ABCF2Q9UG63 623 aa13.05□□□□□ -0.32
COL27A1-204ENST00000477421 CHST3Q7LGC8 479 aa13.05□□□□□ -0.32
COL27A1-204ENST00000477421 USP48Q86UV5 1035 aa13.05□□□□□ -0.32
COL27A1-204ENST00000477421 HECW2Q9P2P5 1572 aa13.04□□□□□ -0.32
COL27A1-204ENST00000477421 FAM173BQ6P4H8 233 aa13.04□□□□□ -0.32
COL27A1-204ENST00000477421 ABCA6Q8N139 1617 aa13.04□□□□□ -0.32
COL27A1-204ENST00000477421 DNM1Q05193 864 aaKnown RBP13.04□□□□□ -0.32
COL27A1-204ENST00000477421 HSP90AB3PQ58FF7 597 aa13.04□□□□□ -0.32
COL27A1-204ENST00000477421 C19orf44Q9H6X5 657 aa13.04□□□□□ -0.32
COL27A1-204ENST00000477421 ALDH1L1O75891 902 aa13.04□□□□□ -0.32
COL27A1-204ENST00000477421 TIMM10P62072 90 aa13.04□□□□□ -0.32
COL27A1-204ENST00000477421 IFIT5Q13325 482 aaKnown RBP13.04□□□□□ -0.32
COL27A1-204ENST00000477421 KRT32Q14532 448 aa13.04□□□□□ -0.32
COL27A1-204ENST00000477421 PROSER3Q2NL68 480 aa13.04□□□□□ -0.32
COL27A1-204ENST00000477421 ZNF790Q6PG37 636 aa13.04□□□□□ -0.32
COL27A1-204ENST00000477421 CADPS2Q86UW7 1296 aa13.04□□□□□ -0.32
COL27A1-204ENST00000477421 FAM227BQ96M60 508 aa13.04□□□□□ -0.32
COL27A1-204ENST00000477421 TRMT112Q9UI30 125 aaKnown RBP13.04□□□□□ -0.32
COL27A1-204ENST00000477421 STARD3NLO95772 234 aa13.03□□□□□ -0.32
COL27A1-204ENST00000477421 FILIP1Q7Z7B0 1213 aa13.03□□□□□ -0.32
COL27A1-204ENST00000477421 NUP133Q8WUM0 1156 aa13.03□□□□□ -0.32
COL27A1-204ENST00000477421 ZNF496Q96IT1 587 aaPredicted RBP13.03□□□□□ -0.32
COL27A1-204ENST00000477421 ZNF830Q96NB3 372 aaPredicted RBP13.03□□□□□ -0.32
COL27A1-204ENST00000477421 LDHAL6AQ6ZMR3 332 aa13.03□□□□□ -0.32
COL27A1-204ENST00000477421 CCAR2Q8N163 923 aaKnown RBP13.03□□□□□ -0.32
COL27A1-204ENST00000477421 PIBF1Q8WXW3 757 aa13.03□□□□□ -0.32
COL27A1-204ENST00000477421 ANTXR1Q9H6X2 564 aa13.03□□□□□ -0.32
COL27A1-204ENST00000477421 SHROOM2Q13796 1616 aa13.03□□□□□ -0.32
COL27A1-204ENST00000477421 DDX21Q9NR30 783 aaKnown RBP eCLIP13.03□□□□□ -0.32
COL27A1-204ENST00000477421 SH2B1Q9NRF2 756 aaPredicted RBP13.03□□□□□ -0.32
COL27A1-204ENST00000477421 CWC25Q9NXE8 425 aaPredicted RBP13.03□□□□□ -0.32
COL27A1-204ENST00000477421 PIP4K2BP78356 416 aa13.02□□□□□ -0.32
COL27A1-204ENST00000477421 SAFBQ15424 915 aaKnown RBP eCLIP13.02□□□□□ -0.32
COL27A1-204ENST00000477421 CCDC34Q96HJ3 373 aa13.02□□□□□ -0.32
COL27A1-204ENST00000477421 G3V3G9 751 aa13.02□□□□□ -0.33
COL27A1-204ENST00000477421 LETM1O95202 739 aaPredicted RBP13.02□□□□□ -0.33
COL27A1-204ENST00000477421 TFCP2Q12800 502 aa13.02□□□□□ -0.33
COL27A1-204ENST00000477421 DCAF8Q5TAQ9 597 aa13.02□□□□□ -0.33
COL27A1-204ENST00000477421 ZSCAN22P10073 491 aaPredicted RBP13.02□□□□□ -0.33
COL27A1-204ENST00000477421 TPD52L1Q16890 204 aaPredicted RBP13.02□□□□□ -0.33
COL27A1-204ENST00000477421 HOMER1Q86YM7 354 aa13.02□□□□□ -0.33
COL27A1-204ENST00000477421 ZCRB1Q8TBF4 217 aaKnown RBP13.02□□□□□ -0.33
COL27A1-204ENST00000477421 SUCLG2Q96I99 432 aa13.02□□□□□ -0.33
COL27A1-204ENST00000477421 NEK1Q96PY6 1258 aa13.02□□□□□ -0.33
COL27A1-204ENST00000477421 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.02□□□□□ -0.33
COL27A1-204ENST00000477421 ANAPC15P60006 121 aa13.01□□□□□ -0.33
COL27A1-204ENST00000477421 CCDC129Q6ZRS4 1044 aa13.01□□□□□ -0.33
COL27A1-204ENST00000477421 CCDC144CPQ8IYA2 1237 aa13.01□□□□□ -0.33
COL27A1-204ENST00000477421 U3KPZ7 1027 aaPredicted RBP13.01□□□□□ -0.33
COL27A1-204ENST00000477421 DHX16O60231 1041 aaKnown RBP13.01□□□□□ -0.33
COL27A1-204ENST00000477421 MAP3K11Q16584 847 aa13.01□□□□□ -0.33
COL27A1-204ENST00000477421 RRAGDQ9NQL2 400 aaPredicted RBP13.01□□□□□ -0.33
COL27A1-204ENST00000477421 USP16Q9Y5T5 823 aa13.01□□□□□ -0.33
COL27A1-204ENST00000477421 KIAA0232Q92628 1395 aa13.01□□□□□ -0.33
COL27A1-204ENST00000477421 FAM135BQ49AJ0 1406 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms